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Target CDS Information

Gene Symbol (Gene ID) Slc34a1 (ENSMUSG00000021490)
Cross Reference
CCDS CCDS49271.1
EMBL AB163921, AB163922, AK018740, ...show all
Fantom 0610011J16
GO GO:0001503, GO:0001822, GO:0005515, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name Slc34a1-201
protein_id AAH20529.1, BAB31381.1, BAE48723.1, ...show all
Reactome R-MMU-382551, R-MMU-425393, R-MMU-425407, ...show all
RefSeq_mRNA NM_011392.2
RefSeq_peptide NP_035522
UCSC uc007qqs.1
UniParc UPI0000021C14
Uniprot/SPTREMBL Q9D2V6
Definition protein_id:ENSMUSP00000059138
translation:
MMSYSERLGGPAVSPLPVRGRHMVHGATFAYVPSPQVLHRIPGTSTYAISSLSPVTLTEH
SCPCGEVLECHDPLPTKLAQEEEQKPEPRLSQKLAQVGTKLLKVPLMLAFLYLFVCSLDV
LSSAFQLAGGKVAGDIFKDNAILSNPVAGLVVGILVTVLVQSSSTSTSIIVSMVSSGLLE
VSSAIPIIMGSNIGTSVTNTIVALMQAGDRTDFRRAFAGATVHDCFNWLSVLVLLPLEAA
TGYLHHVTGLVVASFNIRGGRDAPDLLKVITEPFTRLIIQLDKSVITSIAVGDESLRNHS
LIRIWCHPDTTEASTSMSRVEAIGSLANTTMEKCNHIFVDTGLPDLAVGLILLAGSLVVL
CTCLILLVKMLNSLLKGQVANVIQKVINTDFPAPFTWVTGYFAMVVGASMTFVVQSSSVF
TSAITPLIGLGVISIERAYPLTLGSNIGTTTTAILAALASPREKLSSSFQIALCHFFFNI
SGILLWYPLPCTRLPIRMAKALGKRTAKYRWFAVLYLLVCFLLLPSLVFGISMAGWQAMV
GVGTPFGALLAFVVLVNVLQSRSPGHLPKWLQTWDFLPRWMHSLQPLDGLITRATLCYAR
PEPRSPQLPPRVFLEELPPATPSPRLALPAHHNATRL

Chromosome 13
Length
Position(start - end)
13,178
55,400,458 - 55,413,637
Orient to Chromosome plus
Link Location : (13:55400458-55413637)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Slc34a1 (ENSMUSG00000021490)
Transcript ID ENSMUST00000057167
Reports
substitution
cSNPs4
Insertion16
Deletion19
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num0
synonymous substitutions 55403064 (p.Lys268Lys), 55412040 (p.Pro392Pro), 55413367 (p.Ala548Ala), 55413586 (p.Thr621Thr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000057167)
MMSYSERLGGPAVSPLPVRGRHMVHGATFAYVPSPQVLHRIPGTSTYAISSLSPVTLTEH
SCPCGEVLECHDPLPTKLAQEEEQKPEPRLSQKLAQVGTKLLKVPLMLAFLYLFVCSLDV
LSSAFQLAGGKVAGDIFKDNAILSNPVAGLVVGILVTVLVQSSSTSTSIIVSMVSSGLLE
VSSAIPIIMGSNIGTSVTNTIVALMQAGDRTDFRRAFAGATVHDCFNWLSVLVLLPLEAA
TGYLHHVTGLVVASFNIRGGRDAPDLLKVITEPFTRLIIQLDKSVITSIAVGDESLRNHS
LIRIWCHPDTTEASTSMSRVEAIGSLANTTMEKCNHIFVDTGLPDLAVGLILLAGSLVVL
CTCLILLVKMLNSLLKGQVANVIQKVINTDFPAPFTWVTGYFAMVVGASMTFVVQSSSVF
TSAITPLIGLGVISIERAYPLTLGSNIGTTTTAILAALASPREKLSSSFQIALCHFFFNI
SGILLWYPLPCTRLPIRMAKALGKRTAKYRWFAVLYLLVCFLLLPSLVFGISMAGWQAMV
GVGTPFGALLAFVVLVNVLQSRSPGHLPKWLQTWDFLPRWMHSLQPLDGLITRATLCYAR
PEPRSPQLPPRVFLEELPPATPSPRLALPAHHNATRL*
MSMv4 transcript
MMSYSERLGGPAVSPLPVRGRHMVHGATFAYVPSPQVLHRIPGTSTYAISSLSPVTLTEH
SCPCGEVLECHDPLPTKLAQEEEQKPEPRLSQKLAQVGTKLLKVPLMLAFLYLFVCSLDV
LSSAFQLAGGKVAGDIFKDNAILSNPVAGLVVGILVTVLVQSSSTSTSIIVSMVSSGLLE
VSSAIPIIMGSNIGTSVTNTIVALMQAGDRTDFRRAFAGATVHDCFNWLSVLVLLPLEAA
TGYLHHVTGLVVASFNIRGGRDAPDLLKVITEPFTRLIIQLDKSVITSIAVGDESLRNHS
LIRIWCHPDTTEASTSMSRVEAIGSLANTTMEKCNHIFVDTGLPDLAVGLILLAGSLVVL
CTCLILLVKMLNSLLKGQVANVIQKVINTDFPAPFTWVTGYFAMVVGASMTFVVQSSSVF
TSAITPLIGLGVISIERAYPLTLGSNIGTTTTAILAALASPREKLSSSFQIALCHFFFNI
SGILLWYPLPCTRLPIRMAKALGKRTAKYRWFAVLYLLVCFLLLPSLVFGISMAGWQAMV
GVGTPFGALLAFVVLVNVLQSRSPGHLPKWLQTWDFLPRWMHSLQPLDGLITRATLCYAR
PEPRSPQLPPRVFLEELPPATPSPRLALPAHHNATRL*
homology100.00 (638 / 638)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Slc34a1 (ENSMUSG00000021490)
Transcript ID ENSMUST00000057167
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTGCAGCGTTAGGAAGGCTTGGAACCATTGCTCTAGGGTACCTGCATTTG
TCATGACACTTGGTTGCCATTTCTACTCGCTTAGAGATGACATCATTTGCAGCCGTCTCC
TGGCCAGACTTTGAATATCCTGAGGGGCAGTGGCTGTGTGTGGTTTTACTTAGGACTGTA
CCCCACCATCTAACTCAGAACTTAGGATCTACTATGCATTCATGAATCACTTGTTAGGTT
TGGGGATGTGGCTCCCGTGAACTCTTTCCCACAGGACTTACTGCATATCATGCACTTCCA
GATCCCAACTGTCCCTCTTCCTCCTTCCCAATGCCTCTGGGAAGCTTCCTGTCCCCTGTT
TCTCCTGAGCCCACCTTAGTTCAGCCAGGCCACCTCTCCCCCGGGTCTCTCCTCCGCATC
TCAGCTGCTGCCCCTGCTTCCAGACACTCCTTCTGACAGATCCCATAGCAACACTTTAAG
AAGGATGCTAAACCGCAGAGCCATCTCTTCTTGGTCTGGGCAGTGGCTCTGTGATCTCTT
AATCTCACATCGTGATCCATTGTTCAGCCCTGCAGACCCTCCACGGTTCAAAGATGCAGC
CTCACTGGGATTCTCCCCTGGGCTCCCCCTTCTGTTGAAGTGTACCCCTTAAGACATACA
CAGCCTCACAGACATCCAGATGCATGGCAAGGTCACCAGATGTCTGGGTCACTCTCTGGG
GAGTCCTGTCCATTCATAAGCCAAGAATGGACAGGAGACACAAAATTGCTTTTGAGTCCC
TAAGAACAAGGTACCAGAGGGGTGTCGGAGTCTCTGTCCATGACCAGGATGAGCCTGTAC
CCTGTGGGTTGTGATTTGTGCTGGTGTAGTGAGAGAGGACAGTCTGACCATAGGCTCCCC
CTGCAGAGGTGAAGATTAGCAATTAACTGGAAGGAATCTTGGGGGTAAAGTTAATTTAAT
GGGGAAAAGAGGGAAGGCAGCTAAAGTTCTTCTAGTTCATTAAGGACTTT
1 EXON 1 55,399,648 55,399,735 - - 88
GCCCTTGACCCGAGGGTATAAAGAAGAGGGTCTTAGTTCCTCTTTAGACTTCCCCAAGCA
GCTGGGCTGGAGCTGAGCCACAGTCAAG
INTRON 1 - 2 55,399,736 55,400,436 701
GTGAGCCCAGGGCCCCTGTGTCCCA..........TTTGTCCCAACCTTTTGATATACAG
2 EXON 2 55,400,437 55,400,566 - 1 130
GACTCATTGTGGGTGCCCAACATGATGTCCTACAGCGAGAGATTGGGGGGACCGGCTGTC
TCCCCACTTCCAGTCCGTGGGAGACACATGGTGCATGGGGCAACCTTTGCTTATGTGCCC
AGCCCACAAG
INTRON 2 - 3 55,400,567 55,400,687 121
GTAAATATTACTCCTATACCCTGAG..........AGTCCTAATCAGTCTCCCTCCTCAG
3 EXON 3 55,400,688 55,400,837 1 1 150
TCCTGCACAGGATTCCTGGAACATCCACCTATGCCATCTCCAGTCTGAGCCCGGTCACCC
TCACAGAGCACAGCTGTCCCTGTGGGGAAGTCCTGGAATGTCATGACCCACTACCTACCA
AGCTGGCTCAGGAAGAGGAGCAAAAGCCAG
INTRON 3 - 4 55,400,838 55,400,924 87
GTAGGCCAAGTTGGGGAGCAGTGGG..........GTCTTCATGTTTGCCCCACCTCCAG
4 EXON 4 55,400,925 55,401,053 1 1 129
AGCCCAGGCTGTCCCAGAAGCTTGCCCAGGTTGGCACGAAGCTCCTGAAGGTGCCTCTGA
TGCTGGCTTTCCTTTACCTCTTTGTCTGCTCCCTGGATGTGCTCAGCTCCGCCTTCCAGT
TGGCTGGAG
INTRON 4 - 5 55,401,054 55,401,126 73
GTAGGGCCCAGGTGGAGGAGGGCAG..........GTTGACACTGGCTTCTGTTCTGCAG
5 EXON 5 55,401,127 55,401,270 1 1 144
GGAAGGTGGCTGGGGACATCTTCAAGGACAATGCCATCCTATCCAACCCAGTGGCAGGGC
TGGTGGTGGGGATCCTGGTGACAGTTCTGGTGCAGAGTTCCAGTACCTCTACATCCATCA
TTGTCAGCATGGTCTCCTCCGGCT
INTRON 5 - 6 55,401,271 55,402,667 1,397
GTGAGTCGGCCCAGCATGGCCGGGG..........GTTTGAGAGGTTCCTCTTTCACCAG
6 EXON 6 55,402,668 55,402,779 1 2 112
TGTTGGAGGTGAGCTCCGCCATTCCGATCATCATGGGCTCCAACATCGGAACCTCTGTCA
CCAACACCATTGTGGCCCTGATGCAGGCAGGGGACAGGACTGACTTCAGGCG
INTRON 6 - 7 55,402,780 55,402,904 125
GTGAGCTGGGGAAGGAGGTTCGGGC..........CCCACAATGTGACGTCCCTGCTCAG
7 EXON 7 55,402,905 55,403,100 2 0 196
GGCTTTTGCAGGGGCGACCGTGCATGACTGTTTTAACTGGCTGTCTGTTCTGGTCCTACT
GCCCCTGGAGGCTGCCACGGGCTACCTACACCATGTCACCGGGCTTGTGGTTGCTTCCTT
CAACATCCGAGGTGGCCGTGATGCCCCCGACCTTCTCAAGGTCATCACAGAGCCCTTCAC
AAGACTCATCATCCAG
INTRON 7 - 8 55,403,101 55,403,243 143
GTGAGGGTGGGACTTGCCACAGGAT..........ATCGTCATCATCATCTTGCTCACAG
8 EXON 8 55,403,244 55,403,339 0 0 96
CTGGACAAGTCTGTGATCACCAGCATTGCCGTGGGGGATGAGTCCCTGAGGAATCACAGT
CTCATTCGGATTTGGTGTCACCCAGACACAACAGAG
INTRON 8 - 9 55,403,340 55,408,691 5,352
GTGAGTTCCAGAGTCAGGTAAGACG..........CTAAGTCACCTTCCTCTGAATTTAG
9 EXON 9 55,408,692 55,408,755 0 1 64
GCTTCCACTTCTATGTCCAGGGTAGAGGCCATCGGCAGCCTTGCAAACACCACCATGGAG
AAAT
INTRON 9 - 10 55,408,756 55,408,992 237
GTAAGTACCTCTAACATGGGAGGCA..........AAGACTCCTGATACTGCCCTTTCAG
10 EXON 10 55,408,993 55,409,160 1 1 168
GCAACCATATCTTCGTGGATACGGGGCTGCCCGACCTGGCCGTGGGGCTCATTCTGCTGG
CGGGCTCCCTGGTGGTTCTCTGCACTTGTCTTATCCTCCTTGTGAAGATGCTCAACTCCC
TGCTCAAGGGCCAAGTGGCCAATGTCATCCAGAAGGTCATCAACACAG
INTRON 10 - 11 55,409,161 55,412,032 2,872
GTGAGCTGGAAGAAGACTGCAGGCC..........TACTGGGGATTTGGCTTCCTTTCAG
11 EXON 11 55,412,033 55,412,149 1 1 117
ACTTTCCAGCCCCCTTCACCTGGGTCACGGGCTACTTTGCCATGGTGGTGGGTGCCAGCA
TGACCTTTGTTGTCCAGAGCAGCTCCGTGTTCACCTCAGCCATCACCCCACTCATTG
INTRON 11 - 12 55,412,150 55,412,247 98
GTGAGTGTCCATGACCAGCCATGCG..........AACAGCGTTCTCTCCTACCTACCAG
12 EXON 12 55,412,248 55,412,372 1 0 125
GCCTGGGTGTGATCAGCATTGAGCGGGCCTACCCTCTCACCCTGGGCTCCAACATTGGCA
CTACCACTACAGCCATCCTGGCAGCGCTTGCCAGCCCCAGGGAGAAGCTATCCAGCTCAT
TTCAG
INTRON 12 - 13 55,412,373 55,413,133 761
GTACATGGAGAGATCCGGCCGTCTG..........ATCACTTCTGGCTTCTCTCCTACAG
13 EXON 13 55,413,134 55,414,695 0 - 1,562
ATTGCCCTCTGCCACTTCTTCTTCAACATCTCGGGCATCCTACTGTGGTACCCGCTGCCC
TGCACACGCCTGCCCATACGCATGGCCAAGGCCCTGGGCAAACGCACCGCCAAGTACCGC
TGGTTTGCTGTCCTCTACCTGCTCGTGTGCTTCCTGCTCTTGCCCTCGCTGGTGTTTGGC
ATTTCCATGGCAGGCTGGCAGGCTATGGTCGGAGTGGGCACGCCCTTTGGGGCCCTACTG
GCCTTTGTGGTGCTTGTTAATGTCCTGCAGAGCCGAAGTCCCGGGCACCTCCCCAAGTGG
CTGCAGACATGGGACTTCCTACCTCGCTGGATGCACTCTTTGCAGCCCCTGGATGGCCTT
ATCACAAGAGCCACCTTGTGTTATGCCAGGCCCGAGCCCCGTTCACCCCAACTTCCCCCT
AGAGTCTTCCTGGAGGAGCTTCCCCCAGCCACACCCTCCCCCCGCCTGGCACTGCCTGCT
CACCACAATGCCACCCGTCTCTAGACTACAGGCCCAGACTACTGCCTGGAACGGGGAGTG
GTATTTTTACAGTGCCCACAGTAGAAAGACAGAGCATGTGTGTGTGCGTGCACACGTGTG
TAGATGCGTGTCACTTGAGGTACATAATTTTGTGCCACCCTTGGGTACCTGTGCATATTA
AGGGCCGCAGTGGCATGGGCTTTTGTAATTAAGAGGTAGCGTGCACAAATACATGCTAGG
TACTGAGCCTGTGTGACCATCAGTGCGGGTGTAATGTGAGTACATTGTGTGGGTACAGGG
GGGTGCAGATGCCTAGGGAGTCTCCAAACTTTTCTGGAAAGAGTCAGCTGTACCCTCTCA
TCTTCTCACAACTCTTGTACCAACAGGAGGGACAGAAGAACAGCTGGCCTTCTGTATACA
TGGGCCTTACTTCTGCCAATTCTGCTAACTGTGCATAGAAAAAAAAAGTTGAAAGTTGCA
TCTGTCCTGATCATATATGGGCTTTTTTAAAGAAATCATATTCCTTACCCCTACGGCACA
ATAATTCTTTACATAGCTTTTATATTGGGTATCTAAATCACCTGGAGGTCACACACCAGG
GGATGCAGGTTGATTCTTTGCAAACACTGTCGCTTTATAAAAGAGACTTGAGCACCTGAG
GATTTAAGTATCCTGAGGTATCATGGAGCCAAATCTCCAAGCATACAGAGGGACACTCGC
CTTTAGTCTGAATCCTACAGACCTTGGCTGGTGTGTGCTGGGGAGGGAGATGCTGAGAGA
CACTCCGTTGTTCACTGTGAAGCCTACTTGTGTGGAAAGTTCTGTGAGAAAGATTGCTGA
AGCCTGAGGTAGAGTTTGAGAATTTGCCACCCCAATATTCCTAATCAGGTGTGGGGTCTC
TGGAACCCTGGGAAGGTGCCAGGACCAAAGGCCTCTATATGGCATCTACCACAGGAGTAG
GGAACAGGGCCCAGGAGGCCTGGAGGACCACCAGGATTATTTTGTTCTGCAAGAATCTCC
CCATAAGCTAGTTTTCTTGTTTGCAACTCCTCACAAATACACAGAGGATACCTCTCAGAG
TA
3' upstream sequence
CCCAGTTCACGGTTTATTCTGGTCTCCCTACCAACCACGGGCGGTCTAGCTGTCCTACTA
AGAGCACTGCTCACGCAGCCCACCAATCAGATCGTGCACTGTCTTATTGAGGATGCCTCC
ATGCACGCCTCGTCTGCCCATGAGCACCAGGAGCGCCCGTGGCGTGTGGCCCACACAGAT
TGCACGCCCGTCTAGCCCCTTGGTGCGCGCATCCAGTACGCCGTCACCCTCGGCCAGCAG
GTAGTCACGGATAACGCAGCAGCGGCGGCCTGCCACGCTCAGACCCGTCTGCAGAAAGGT
GTGCCGGTCTGGCCCGGTGAGCACACCCACCTCCTGCGGGGAGATGGCAGCCAGCAGACC
CCCAGGCCGTGATGCCCACACACAGCGATTGTCCGAGTGGCCCACGATAGCCACGTCATC
GATCCGCTGATCCCGCAGCACTGCACTGATGTAGCCCTTCCAGTCACTCATCTCCGCTCA
GTCAGTCCCAGCAACTTGTGCTTGCATTAGGGGGGGTGGCCGGCTGCATTCAGAGCTAAG
AACACTGGCCGCACGCCCGAAGTTCGCAGGGCGGGGCTGTGACGTAAGGCAAACGTCACA
GAACATCTAACTAGAAGGAGAAGGAGAGGGCGGTAGAGTTGGTGGGGGTTCGGGGGCGGT
TCTAAAAGTAGCATGTAGGAGGAAATGGAAGAAGATGGATGAGAAGCTGGAAAGGTGGCT
CAGCGTTAAGAAAGAGCACTCATTACACAGAGCCTGAGTTCCGTTCCCAGCATCACCTCT
TTTGGCCTACAAAGCCTGTAACTCCCACTCGAGAGATCTGACAACTCCTGAGGCAAGCTC
ACACACAAACACACACATGATTTAAAATAAAATAAAATAAAAAAATAAATAAAAAAAGGT
CCCGCAACTGAGTGCCATTTTCAGAGGACCAGAGTTCAATTCCCAGCACCCAGGTAAAGC
AGTGCATCTGGCTTGCTTGGGCACCTGCACTCATGTCCAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Slc34a1 (ENSMUSG00000021490)
Transcript ID ENSMUST00000057167
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 638 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information