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Target CDS Information

Gene Symbol (Gene ID) Hivep1 (ENSMUSG00000021366)
Cross Reference
CCDS CCDS36643.1
EMBL AC159258
GO GO:0000122, GO:0000980, GO:0001206, ...show all
goslim_goa GO:0001071, GO:0003674, GO:0003677, ...show all
MGI_trans_name Hivep1-201
RefSeq_mRNA NM_007772.2
RefSeq_mRNA_predicted XM_011244371.1
RefSeq_peptide NP_031798
RefSeq_peptide_predicted XP_006516901.1, XP_006516902.1, XP_006516903.1, ...show all
UCSC uc007qfk.1
UniParc UPI00001E7D84
Uniprot/SPTREMBL F8VPM9
Definition protein_id:ENSMUSP00000056147
translation:
MPRTKQIHPRNLRDKIEEAQKELNGAEVSKKEVLEAGVKGTSESLKGVKRKKIVAENHLK
KIPKSPLRNPLQTKHKQNTEEPPFSVLPSASESHKKHNCVPAKQGRQFTKQNGETPGMTA
ESSESGDLVSPKKTSSPHQRSELRRWRSEGSDPTRLSGLDGQRDSSSSSSKARTDNSECS
SPCCSTTPPSYTSTAFDVLLKAMEPELSTLSQKGSSCAIKTEKLRPNKTVRSPSKLKNSS
LDAPNATSPDLVVESPCPPCTSYPVHVASTQKSEQVAAQCVSHLYSSQDHLVPKLSQQNQ
QLPGHLGFTGSLTNLHTLESTKLEPIYNTAVTSTVGLTSPSTRTQVTPPHQQMDSVSPLS
VSPASSTQSPPGPIYSSAHVASVVSQSVEQMCSLLLRDQKPKKQGKYICEYCNRACAKPS
VLLKHIRSHTGERPYPCVTCGFSFKTKSNLYKHKKSHAHTIKLGLVLQPEAGGLFLSQEC
PKALSVHSDIEDSGESDEEGLADGRQNNPCVKDLQPVQTMKTVSNPESLPKLIPSNSDHV
VRGFSSQDRPSDSQAPTELPKVVVHPVSMPPLKTDCLQVANPNPELPSPQSPRDLHVASI
LSHSASVSSLEMDESCHQKGDVIQSEGKPDSHSGTAHAQLQRQQATEDPQEQQGKLLLSP
RSLGSTDSGYFSRSESADQAVSPPTPFARTFPTMDPDPAKNGGAPGPRISAPAPSALATG
EKSSVVTGQMRPPLATKTLEERISKLISDNEALVDDKQLDSVKPRRTSLSRRGSIDSPKS
YIFKDSFQFDLKPMGRRTSSSSDIPKSPFTPTEKSKQVFLLSVPSLDCLPITRSNSMPTT
GYSAIPANIIPPPPSLRGSQSFDDKIGTLYDDVFVSGPNPSMPPSGHHRPLVRQAAVEDS
TASESHVPGSGQSVDESCQGCPSSSEAGPVQSKAAQTPHLEKKKSHQGRGTMFECETCRN
RYRKLENFENHKKFYCSELHGPKTKAAVREAEHGPAPGGAQPQVLHYRVAAPTAVWEQTP
QIRKRRKMKSVGDEEDLQPHESGRSPESADALQLQPVPGAAPSPSKHTSATAADQAHRGV
QLVARGPERALPLKQCPMVEQQLNAAAQDKMEVKRQGGGISVIQHTNSLSRPNSFDKPEP
LEGGITFSLQELGRTGMPGALKVIGMAPEEGHPPQDAMHQTALSHNLRGEPRESARKIPS
ERYVLGQPLRLVRQHNIQVPEILVTEEPDRDLEAQSHDEEKSEKFTWPQRSETLSKLPTE
KLPPKKKRLRLAEIEHSSTESSFESTLSRSLSRESSLSHASSFSASLDLEDISKVELAPK
IDFPSKAEFLLIPLGSNTLSVPGSHREMRRAASEQISCVPTLMEVSDFRSKSFDCGSIAP
SHVVPALVESQPSYSPSAVGGTAHVPLLERRRGPLIRQISLNIASDSHLSPGSAAALQTI
VLPSVNTVPFQAPRLPDMASADCPAHTVHPQALAKDLQAEISSSSSTDTFPPQQLFGAHL
LNKTNTSLSHQNTPLPLPVSAQGGKPDAAPTACVSSTGEGSFAPKYQLQCQAFTSDQGCS
APLRSSPNQVLPGQAGADPCPASEAPPAKAADPMAKPCPLPPLELGLPRDEVLQKQLPSF
VLPVPQKRNVTVDCFTPVTSLPQILVTQDLPNMPICQTNQSLVPVSEEQNSMPKSQNYLQ
NASPTPEKELACKTVLPEVGQSVPVSESSPTVQKVSVGRLSPQQESSASSKRMLSPANSL
DIAMEKHQKRAKDENGAVCSTNIRALELPSSRANESHKQKKPVLVRQLCTTEPLEGAALE
QGACSASGRSSNKAANLTQVLPTDSLSSRPSTFAVTDHVNELQEFKNTKVSTSLTPTVGS
FPAPSESACVLPLKSIDNNQEKGSPGVRHEENKVIQGQRPPLVSGLSLVSSSDTQQPSFP
SLKTATSFTWCYLLRQKALPLAQNDQKTSAYTGWTVSSSNPNPLGLPTKVALSLLNSKQK
TGKSLYCQAITTHSKSDLVVYSSKWKNNLSKRALGNQKATVVEFSNKDDSEINSEQDKEN
SLIKSEPRRIKIFDGGYKSNEDYVYVRGRGRGKYICEECGIRCKKPSMLKKHIRTHTDVR
PYHCSYCNFSFKTKGNLTKHMKSKAHSKKCVDLGVSVGLIDEQDTEESDEKQRFGCERSG
YDLEESDGPDEDDNDNEEDDDDSQAESGLSAAPSVTASPQHLPSRSGLQDPGSVEEELRV
SSCFSGVHTDPMDILPRALLTKMTVLSTVQSSPNRTDLPAKARQSTEKDEHEQAPPADTP
RSPGHQLSVHSSESDVLRSPAAGNPAAGSPGAAVQDSSVGLPPAVAQLNPQPAARISSSV
SPHPDSQDQKQQIILQPPPGLPSPQTHLFSHLPLHSQQQSRTPYNMVPVGGIHVVTAGLT
YSTFVPIQAGPMQLTIPAVSVIHRTVGTSGDTITEASGAPNRPTGVAELSSVVPCIPIGQ
IHVPGLQNLSPPALQSLTSLGMETVNLVGLANATVGPQGHPPGLALNAVGLQVLANAPAQ
SSPAPPAHIQGLQILNIALPTLIPSVGPVAVGTTGTPETTAPNSKAMELQMPAGQGHSAE
PPQGSPEGPQETPQTVSGPSADHARPEDSTKMDTKKGPSAGHVLPGRSPAQAQPAPTPEA
LQKVATSAPPSLPTDRAAPRPPVPHRQPIVHFSDVSSDDDEDRLVIAT

Chromosome 13
Length
Position(start - end)
129,009
42,055,503 - 42,184,513
Orient to Chromosome plus
Link Location : (13:42055503-42184513)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Hivep1 (ENSMUSG00000021366)
Transcript ID ENSMUST00000060148
Reports
substitution
cSNPs37
Insertion68
Deletion89
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num20
non-synonymous num17
synonymous substitutions 42154663 (p.Gly126Gly), 42154762 (p.Leu159Leu), 42155525 (p.Arg414Arg), 42155749 (p.Ser488Ser), 42156547 (p.Val754Val), 42156718 (p.Pro811Pro), 42156721 (p.Thr812Thr), 42156851 (p.Leu856Leu), 42157453 (p.Pro1056Pro), 42158089 (p.Arg1268Arg), 42159415 (p.Pro1710Pro), 42159655 (p.Thr1790Thr), 42159676 (p.Ala1797Ala), 42159700 (p.Ser1805Ser), 42164370 (p.Cys2107Cys), 42181661 (p.Ser2225Ser), 42181706 (p.Leu2240Leu), 42181745 (p.Pro2253Pro), 42183862 (p.Pro2472Pro), 42184405 (p.Pro2653Pro),
non-synonymous substitutions 42154662 (p.Gly126Val), 42156672 (p.Arg796Gln), 42157404 (p.His1040Arg), 42157683 (p.Asn1133Ser), 42157721 (p.Thr1146Ala), 42157748 (p.Thr1155Ala), 42158690 (p.His1469Tyr), 42158757 (p.Pro1491Leu), 42158949 (p.Ser1555Leu), 42158975 (p.Arg1564Cys), 42159417 (p.Thr1711Ile), 42159578 (p.Ala1765Pro), 42159833 (p.Val1850Leu), 42159936 (p.Ser1884Leu), 42181774 (p.Arg2263Lys), 42183632 (p.Thr2396Pro), 42184415 (p.Ala2657Thr),
B6 transcript
(ENSMUST00000060148)
MPRTKQIHPRNLRDKIEEAQKELNGAEVSKKEVLEAGVKGTSESLKGVKRKKIVAENHLK
KIPKSPLRNPLQTKHKQNTEEPPFSVLPSASESHKKHNCVPAKQGRQFTKQNGETPGMTA
ESSESGDLVSPKKTSSPHQRSELRRWRSEGSDPTRLSGLDGQRDSSSSSSKARTDNSECS
SPCCSTTPPSYTSTAFDVLLKAMEPELSTLSQKGSSCAIKTEKLRPNKTVRSPSKLKNSS
LDAPNATSPDLVVESPCPPCTSYPVHVASTQKSEQVAAQCVSHLYSSQDHLVPKLSQQNQ
QLPGHLGFTGSLTNLHTLESTKLEPIYNTAVTSTVGLTSPSTRTQVTPPHQQMDSVSPLS
VSPASSTQSPPGPIYSSAHVASVVSQSVEQMCSLLLRDQKPKKQGKYICEYCNRACAKPS
VLLKHIRSHTGERPYPCVTCGFSFKTKSNLYKHKKSHAHTIKLGLVLQPEAGGLFLSQEC
PKALSVHSDIEDSGESDEEGLADGRQNNPCVKDLQPVQTMKTVSNPESLPKLIPSNSDHV
VRGFSSQDRPSDSQAPTELPKVVVHPVSMPPLKTDCLQVANPNPELPSPQSPRDLHVASI
LSHSASVSSLEMDESCHQKGDVIQSEGKPDSHSGTAHAQLQRQQATEDPQEQQGKLLLSP
RSLGSTDSGYFSRSESADQAVSPPTPFARTFPTMDPDPAKNGGAPGPRISAPAPSALATG
EKSSVVTGQMRPPLATKTLEERISKLISDNEALVDDKQLDSVKPRRTSLSRRGSIDSPKS
YIFKDSFQFDLKPMGRRTSSSSDIPKSPFTPTEKSKQVFLLSVPSLDCLPITRSNSMPTT
GYSAIPANIIPPPPSLRGSQSFDDKIGTLYDDVFVSGPNPSMPPSGHHRPLVRQAAVEDS
TASESHVPGSGQSVDESCQGCPSSSEAGPVQSKAAQTPHLEKKKSHQGRGTMFECETCRN
RYRKLENFENHKKFYCSELHGPKTKAAVREAEHGPAPGGAQPQVLHYRVAAPTAVWEQTP
QIRKRRKMKSVGDEEDLQPHESGRSPESADALQLQPVPGAAPSPSKHTSATAADQAHRGV
QLVARGPERALPLKQCPMVEQQLNAAAQDKMEVKRQGGGISVIQHTNSLSRPNSFDKPEP
LEGGITFSLQELGRTGMPGALKVIGMAPEEGHPPQDAMHQTALSHNLRGEPRESARKIPS
ERYVLGQPLRLVRQHNIQVPEILVTEEPDRDLEAQSHDEEKSEKFTWPQRSETLSKLPTE
KLPPKKKRLRLAEIEHSSTESSFESTLSRSLSRESSLSHASSFSASLDLEDISKVELAPK
IDFPSKAEFLLIPLGSNTLSVPGSHREMRRAASEQISCVPTLMEVSDFRSKSFDCGSIAP
SHVVPALVESQPSYSPSAVGGTAHVPLLERRRGPLIRQISLNIASDSHLSPGSAAALQTI
VLPSVNTVPFQAPRLPDMASADCPAHTVHPQALAKDLQAEISSSSSTDTFPPQQLFGAHL
LNKTNTSLSHQNTPLPLPVSAQGGKPDAAPTACVSSTGEGSFAPKYQLQCQAFTSDQGCS
APLRSSPNQVLPGQAGADPCPASEAPPAKAADPMAKPCPLPPLELGLPRDEVLQKQLPSF
VLPVPQKRNVTVDCFTPVTSLPQILVTQDLPNMPICQTNQSLVPVSEEQNSMPKSQNYLQ
NASPTPEKELACKTVLPEVGQSVPVSESSPTVQKVSVGRLSPQQESSASSKRMLSPANSL
DIAMEKHQKRAKDENGAVCSTNIRALELPSSRANESHKQKKPVLVRQLCTTEPLEGAALE
QGACSASGRSSNKAANLTQVLPTDSLSSRPSTFAVTDHVNELQEFKNTKVSTSLTPTVGS
FPAPSESACVLPLKSIDNNQEKGSPGVRHEENKVIQGQRPPLVSGLSLVSSSDTQQPSFP
SLKTATSFTWCYLLRQKALPLAQNDQKTSAYTGWTVSSSNPNPLGLPTKVALSLLNSKQK
TGKSLYCQAITTHSKSDLVVYSSKWKNNLSKRALGNQKATVVEFSNKDDSEINSEQDKEN
SLIKSEPRRIKIFDGGYKSNEDYVYVRGRGRGKYICEECGIRCKKPSMLKKHIRTHTDVR
PYHCSYCNFSFKTKGNLTKHMKSKAHSKKCVDLGVSVGLIDEQDTEESDEKQRFGCERSG
YDLEESDGPDEDDNDNEEDDDDSQAESGLSAAPSVTASPQHLPSRSGLQDPGSVEEELRV
SSCFSGVHTDPMDILPRALLTKMTVLSTVQSSPNRTDLPAKARQSTEKDEHEQAPPADTP
RSPGHQLSVHSSESDVLRSPAAGNPAAGSPGAAVQDSSVGLPPAVAQLNPQPAARISSSV
SPHPDSQDQKQQIILQPPPGLPSPQTHLFSHLPLHSQQQSRTPYNMVPVGGIHVVTAGLT
YSTFVPIQAGPMQLTIPAVSVIHRTVGTSGDTITEASGAPNRPTGVAELSSVVPCIPIGQ
IHVPGLQNLSPPALQSLTSLGMETVNLVGLANATVGPQGHPPGLALNAVGLQVLANAPAQ
SSPAPPAHIQGLQILNIALPTLIPSVGPVAVGTTGTPETTAPNSKAMELQMPAGQGHSAE
PPQGSPEGPQETPQTVSGPSADHARPEDSTKMDTKKGPSAGHVLPGRSPAQAQPAPTPEA
LQKVATSAPPSLPTDRAAPRPPVPHRQPIVHFSDVSSDDDEDRLVIAT*
MSMv4 transcript
MPRTKQIHPRNLRDKIEEAQKELNGAEVSKKEVLEAGVKGTSESLKGVKRKKIVAENHLK
KIPKSPLRNPLQTKHKQNTEEPPFSVLPSASESHKKHNCVPAKQGRQFTKQNGETPGMTA
ESSESVDLVSPKKTSSPHQRSELRRWRSEGSDPTRLSGLDGQRDSSSSSSKARTDNSECS
SPCCSTTPPSYTSTAFDVLLKAMEPELSTLSQKGSSCAIKTEKLRPNKTVRSPSKLKNSS
LDAPNATSPDLVVESPCPPCTSYPVHVASTQKSEQVAAQCVSHLYSSQDHLVPKLSQQNQ
QLPGHLGFTGSLTNLHTLESTKLEPIYNTAVTSTVGLTSPSTRTQVTPPHQQMDSVSPLS
VSPASSTQSPPGPIYSSAHVASVVSQSVEQMCSLLLRDQKPKKQGKYICEYCNRACAKPS
VLLKHIRSHTGERPYPCVTCGFSFKTKSNLYKHKKSHAHTIKLGLVLQPEAGGLFLSQEC
PKALSVHSDIEDSGESDEEGLADGRQNNPCVKDLQPVQTMKTVSNPESLPKLIPSNSDHV
VRGFSSQDRPSDSQAPTELPKVVVHPVSMPPLKTDCLQVANPNPELPSPQSPRDLHVASI
LSHSASVSSLEMDESCHQKGDVIQSEGKPDSHSGTAHAQLQRQQATEDPQEQQGKLLLSP
RSLGSTDSGYFSRSESADQAVSPPTPFARTFPTMDPDPAKNGGAPGPRISAPAPSALATG
EKSSVVTGQMRPPLATKTLEERISKLISDNEALVDDKQLDSVKPRRTSLSRRGSIDSPKS
YIFKDSFQFDLKPMGQRTSSSSDIPKSPFTPTEKSKQVFLLSVPSLDCLPITRSNSMPTT
GYSAIPANIIPPPPSLRGSQSFDDKIGTLYDDVFVSGPNPSMPPSGHHRPLVRQAAVEDS
TASESHVPGSGQSVDESCQGCPSSSEAGPVQSKAAQTPHLEKKKSHQGRGTMFECETCRN
RYRKLENFENHKKFYCSELHGPKTKAAVREAEHGPAPGGAQPQVLHYRVAAPTAVWEQTP
QIRKRRKMKSVGDEEDLQPRESGRSPESADALQLQPVPGAAPSPSKHTSATAADQAHRGV
QLVARGPERALPLKQCPMVEQQLNAAAQDKMEVKRQGGGISVIQHTNSLSRPSSFDKPEP
LEGGIAFSLQELGRAGMPGALKVIGMAPEEGHPPQDAMHQTALSHNLRGEPRESARKIPS
ERYVLGQPLRLVRQHNIQVPEILVTEEPDRDLEAQSHDEEKSEKFTWPQRSETLSKLPTE
KLPPKKKRLRLAEIEHSSTESSFESTLSRSLSRESSLSHASSFSASLDLEDISKVELAPK
IDFPSKAEFLLIPLGSNTLSVPGSHREMRRAASEQISCVPTLMEVSDFRSKSFDCGSIAP
SHVVPALVESQPSYSPSAVGGTAHVPLLERRRGPLIRQISLNIASDSHLSPGSAAALQTI
VLPSVNTVPFQAPRLPDMASADCPAHTVYPQALAKDLQAEISSSSSTDTFLPQQLFGAHL
LNKTNTSLSHQNTPLPLPVSAQGGKPDAAPTACVSSTGEGSFAPKYQLQCQAFTLDQGCS
APLRSSPNQVLPGQAGADPCPASEAPPAKAADPMAKPCPLPPLELGLPRDEVLQKQLPSF
VLPVPQKRNVTVDCFTPVTSLPQILVTQDLPNMPICQTNQSLVPVSEEQNSMPKSQNYLQ
NASPTPEKELACKTVLPEVGQSVPVSESSPIVQKVSVGRLSPQQESSASSKRMLSPANSL
DIAMEKHQKRAKDENGAVCSTNIRPLELPSSRANESHKQKKPVLVRQLCTTEPLEGAALE
QGACSASGRSSNKAANLTQVLPTDSLSSRPSTFAVTDHVNELQEFKNTKLSTSLTPTVGS
FPAPSESACVLPLKSIDNNQEKGLPGVRHEENKVIQGQRPPLVSGLSLVSSSDTQQPSFP
SLKTATSFTWCYLLRQKALPLAQNDQKTSAYTGWTVSSSNPNPLGLPTKVALSLLNSKQK
TGKSLYCQAITTHSKSDLVVYSSKWKNNLSKRALGNQKATVVEFSNKDDSEINSEQDKEN
SLIKSEPRRIKIFDGGYKSNEDYVYVRGRGRGKYICEECGIRCKKPSMLKKHIRTHTDVR
PYHCSYCNFSFKTKGNLTKHMKSKAHSKKCVDLGVSVGLIDEQDTEESDEKQRFGCERSG
YDLEESDGPDEDDNDNEEDDDDSQAESGLSAAPSVTASPQHLPSRSGLQDPGSVEEELRV
SSCFSGVHTDPMDILPRALLTKMTVLSTVQSSPNRTDLPAKAKQSTEKDEHEQAPPADTP
RSPGHQLSVHSSESDVLRSPAAGNPAAGSPGAAVQDSSVGLPPAVAQLNPQPAARISSSV
SPHPDSQDQKQQIILQPPPGLPSPQTHLFSHLPLHSQQQSRTPYNMVPVGGIHVVPAGLT
YSTFVPIQAGPMQLTIPAVSVIHRTVGTSGDTITEASGAPNRPTGVAELSSVVPCIPIGQ
IHVPGLQNLSPPALQSLTSLGMETVNLVGLANATVGPQGHPPGLALNAVGLQVLANAPAQ
SSPAPPAHIQGLQILNIALPTLIPSVGPVAVGTTGTPETTAPNSKAMELQMPAGQGHSAE
PPQGSPEGPQETPQTVSGPSADHARPEDSTKMDTKKGPSAGHVLPGRSPAQAQPAPTPEA
LQKVATSAPPSLPTDRTAPRPPVPHRQPIVHFSDVSSDDDEDRLVIAT*
homology99.40 (2689 / 2689)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Hivep1 (ENSMUSG00000021366)
Transcript ID ENSMUST00000060148
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTTTTGTGGATGCGTGTAATTTTTAAGTTCAAACTGCTAGTATTATGCCT
ACCCTTGAAAACCTGCTTCGTTCCCCAGAGTCAGCTCTCCTGATATTTCCAGAAGTTTCC
AGTTCCCGTTCTCTAACGCTTTCTAGCAGCCGGGGTCAAACTCTGGTTTGTAATAAATTA
GTCTGTCTTCCCTGTTCACTCCCCCAGAGTTCCAGAAGCCTGCTGGGTGGCTCCGCCCCG
CACCCCCTCTTCGGCTTCCAAAGTTCCCTCGCGGGTTAGTCCCCAGCTGACAGGCAGCCA
AGGAGGGGTTAACTGCGCTCGCTGCTGCTTAGGCTCTGGGAAGCACCGGCTCTCTCCGGA
ATAACCTTGGCTTTCCTCGGTCTTTTAATAGAACATCCGCCACCAAAAAAGTGGTTTCAG
TTTAGGGCTTAATAACACGTCCCCTCTGACCCTCCAAGTCAACAACCCAGCCCCCTTTCA
TTCTCTCTCTCTTTTTTAAAAGTTATTTTTTAAAGTTAATGCGTTTCAAGTTTCACTATG
ATTTTCCCCTTCCCTCTACGCGGAGCAGAGGAAACCCCCTTGGGGTCCCCCCTCCCTCCA
GGGTCCTCCTCCTCCTCCTCCTCCCTACCAGGGCCAGGGCGAGGGGCGGGGCTGGGAGAC
ACCATGACGTCACCGGGCCGGCCCACAGCCTGCTCTAGAAAGTCAAAAGACGGTAAAGAG
AATCCGGCCCCGCCCGGCCCCGCCCCTCCTCCCGGGCCAACCGCCCCCGACTGCGGCCCG
GCCGGGCTTCCCCGGGCCGCGGAGCCCCGCCTCCGCTGCCGCCCCGCCCCGCCCCGCCCT
TCGGGCCGCGCCTCCTCCTGCGTCCTGGGTCCCCGCGGCGGGGCCTGCGGCGGGCGGGCG
GGCGGGCGGGGCGGCAGGGGGCCCCGGGCCGGCTTCACAGGAGCCCGCCCTCCCGCCGCA
GCCCCCGCCCCGCCGCCCCCGGGGATCCCCTGCTGCCCCGCCCACGCGCG
1 EXON 1 42,052,021 42,052,090 - - 70
GGGGGAAGCCGCCGACCTTCGCCCTGGCCGCCCTCGCGCTGCCAGCCGTCCTCACGGACA
CCCGGGAGAG
INTRON 1 - 2 42,052,091 42,055,399 3,309
GTAAAGGCCGCTCTCCCGCCGGGTT..........ACTGCTTTTATCTTTTTCTTTGCAG
2 EXON 2 42,055,400 42,055,542 - 1 143
CATGTGGATTAACTGATGGCCAACGAGTACATGGAGCCAGCCTTTTGTAACCTGCTCTTC
CAACAGTTTCTAAGAAGAAAAGGGAGCTCTTAAATCTAAGAAAATGCCTCGCACGAAGCA
GATTCATCCCAGAAATCTCAGAG
INTRON 2 - 3 42,055,543 42,123,159 67,617
GTAAGGCTCTGTGTTCAGGGAAGAA..........GCTTCTTCTTTTCTCTTTTCCTCAG
3 EXON 3 42,123,160 42,123,213 1 1 54
ACAAAATCGAAGAAGCACAAAAAGAGCTTAATGGGGCAGAAGTTTCCAAAAAAG
INTRON 3 - 4 42,123,214 42,154,379 31,166
GTAAGTTAAAAAAAAAAAAAATCAA..........CTGATTTTCTTTTTTGTCTTAACAG
4 EXON 4 42,154,380 42,160,318 1 0 5,939
AAGTCTTAGAGGCTGGCGTTAAAGGAACTTCTGAGTCTCTTAAAGGTGTGAAACGAAAAA
AGATTGTTGCTGAGAATCACCTGAAAAAAATACCAAAATCCCCCCTGAGGAATCCTCTTC
AGACAAAACACAAGCAAAACACAGAAGAGCCGCCGTTCAGTGTCCTCCCGAGCGCATCAG
AGTCTCATAAGAAACACAACTGTGTCCCTGCTAAACAGGGGAGGCAATTTACCAAGCAAA
ATGGAGAAACTCCAGGGATGACTGCTGAGTCCTCAGAATCTGTAGACTTGGTCTCCCCAA
AGAAAACCTCCTCTCCTCACCAGCGGTCAGAACTGCGGAGATGGAGGTCGGAGGGTTCAG
ACCCAACCAGGCTCAGTGGCCTTGATGGGCAGCGGGACTCCAGCTCCTCCTCCAGTAAAG
CCAGGACTGACAATAGTGAATGTAGCTCTCCTTGCTGTAGCACCACGCCCCCCTCCTATA
CAAGTACCGCGTTCGATGTCTTACTGAAAGCAATGGAGCCAGAACTGAGCACCTTGTCAC
AAAAGGGCTCATCTTGTGCAATTAAGACAGAAAAACTGAGACCAAATAAAACTGTAAGAT
CCCCTTCTAAATTAAAGAACAGCTCCCTGGATGCCCCAAATGCTACGTCCCCAGACCTGG
TTGTCGAGTCGCCCTGTCCTCCGTGTACCTCGTACCCAGTACATGTGGCCTCCACTCAGA
AGAGTGAACAAGTGGCAGCTCAGTGTGTTTCTCACCTGTACAGCTCACAGGACCACCTTG
TTCCCAAACTTAGCCAACAGAATCAGCAGCTTCCGGGGCATCTGGGCTTCACAGGCTCAC
TGACAAACCTGCACACCCTTGAGAGCACTAAACTTGAGCCGATCTATAATACAGCAGTGA
CATCCACTGTAGGTCTCACTTCTCCCTCCACTAGAACTCAGGTCACTCCTCCACACCAGC
AAATGGATTCTGTGTCACCTTTGTCAGTAAGCCCTGCCAGTTCCACACAGTCACCCCCAG
GGCCAATTTACAGCTCAGCCCATGTTGCTTCTGTTGTCAGTCAAAGTGTAGAACAAATGT
GCAGTCTCCTTCTTCGAGATCAGAAGCCAAAAAAACAAGGCAAATATATCTGTGAGTACT
GCAATCGAGCATGTGCAAAGCCCAGCGTGCTTTTAAAGCATATCCGCTCCCACACTGGAG
AGCGGCCTTACCCCTGTGTGACTTGTGGGTTTTCATTTAAGACTAAAAGTAACCTGTATA
AGCACAAGAAGTCCCATGCACACACCATCAAACTGGGCCTTGTCTTACAACCAGAGGCTG
GGGGCTTGTTCTTGTCCCAAGAGTGCCCCAAAGCACTTAGTGTCCATTCGGACATTGAAG
ACAGTGGGGAGAGCGATGAAGAGGGGCTTGCAGATGGGAGACAGAACAACCCATGTGTCA
AGGACCTGCAACCTGTGCAAACAATGAAGACGGTATCGAATCCCGAATCTTTACCCAAAT
TGATACCAAGCAATTCAGATCATGTGGTCCGTGGCTTCTCTTCACAGGACAGACCTTCAG
ACTCACAAGCCCCGACAGAGTTACCAAAGGTTGTGGTCCACCCAGTAAGCATGCCCCCCT
TGAAAACTGACTGTCTTCAGGTGGCCAATCCCAATCCTGAACTTCCTAGTCCACAGAGCC
CGAGGGACCTTCATGTTGCAAGCATACTGTCACATTCAGCCAGTGTGTCATCCTTAGAGA
TGGATGAGTCGTGCCATCAGAAAGGGGATGTGATTCAGTCAGAAGGGAAGCCAGATTCTC
ACAGTGGAACAGCACATGCGCAGCTCCAGAGACAGCAGGCCACAGAGGACCCCCAGGAAC
AGCAGGGGAAGCTGCTGCTGAGTCCCCGGAGCTTAGGAAGTACAGACTCTGGCTACTTTT
CACGGTCCGAGAGTGCTGATCAAGCCGTGAGTCCTCCAACTCCGTTTGCCAGAACTTTTC
CCACCATGGACCCAGACCCAGCTAAGAACGGTGGAGCCCCAGGGCCTCGAATCAGTGCTC
CAGCACCTTCTGCTTTGGCTACCGGAGAGAAGTCATCGGTCGTCACAGGCCAGATGCGCC
CACCCTTGGCCACCAAAACTCTGGAGGAAAGGATTTCCAAGCTGATCTCAGACAATGAAG
CCTTGGTCGATGATAAGCAACTGGATAGCGTGAAGCCCCGGAGAACCTCACTTTCTAGAC
GGGGAAGCATTGACTCCCCCAAATCATACATATTCAAAGATTCCTTCCAGTTTGACCTAA
AACCGATGGGACAGAGAACAAGCTCCAGCTCTGATATACCAAAGTCCCCGTTCACCCCGA
CCGAGAAGTCAAAGCAGGTGTTCCTCCTGTCTGTCCCTTCCCTGGACTGCCTGCCTATCA
CCAGAAGTAACTCCATGCCAACCACGGGCTATTCAGCAATCCCTGCAAATATAATTCCTC
CCCCTCCCTCTCTGAGAGGAAGCCAGTCATTTGATGATAAAATTGGCACCTTGTATGATG
ATGTCTTTGTGTCAGGACCCAACCCATCCATGCCCCCAAGTGGCCATCACCGTCCCCTGG
TCAGACAGGCTGCAGTGGAAGACTCCACAGCCAGTGAGAGTCATGTTCCAGGCTCTGGGC
AGTCTGTGGATGAGAGCTGTCAAGGGTGCCCATCCTCCAGTGAGGCTGGACCAGTACAGA
GCAAAGCAGCGCAGACCCCTCACCTAGAGAAGAAGAAGTCACATCAAGGACGAGGAACCA
TGTTTGAGTGTGAAACCTGTCGAAATAGGTATCGGAAGCTGGAGAATTTTGAGAATCATA
AGAAATTTTACTGTTCAGAGTTACATGGGCCCAAAACAAAGGCAGCTGTGAGAGAGGCAG
AGCACGGCCCGGCACCCGGTGGGGCACAACCCCAGGTTCTCCACTACAGAGTTGCTGCTC
CCACAGCTGTGTGGGAGCAGACACCCCAGATAAGAAAAAGGAGGAAGATGAAAAGCGTAG
GCGATGAGGAGGACTTGCAGCCACGTGAGAGTGGGCGGTCCCCAGAAAGCGCTGATGCCC
TTCAGCTGCAGCCCGTCCCAGGGGCTGCTCCCAGTCCATCCAAACATACCTCTGCCACGG
CAGCTGACCAGGCACACAGAGGCGTCCAGCTTGTGGCCCGGGGCCCTGAACGGGCCTTGC
CCCTGAAGCAGTGCCCCATGGTTGAACAGCAGCTGAATGCTGCAGCTCAGGACAAGATGG
AGGTGAAGAGACAAGGGGGTGGCATCTCTGTCATCCAGCACACCAACTCCCTGAGCAGGC
CCAGTTCATTTGACAAGCCAGAGCCCTTGGAAGGGGGCATCGCCTTTTCTTTACAGGAGT
TAGGCAGAGCTGGGATGCCTGGGGCCCTGAAAGTGATAGGAATGGCCCCAGAGGAAGGCC
ACCCACCTCAGGATGCCATGCATCAGACAGCACTGTCACATAACCTTAGAGGAGAGCCAC
GGGAAAGTGCTAGAAAGATTCCAAGTGAGCGGTATGTGTTAGGGCAGCCCTTGAGACTTG
TCCGGCAGCACAACATCCAGGTCCCAGAAATTCTGGTCACTGAAGAGCCAGACCGGGACC
TGGAAGCCCAGAGTCACGATGAAGAAAAGTCAGAGAAGTTCACTTGGCCTCAGCGTAGTG
AAACCTTATCAAAGCTGCCAACAGAAAAGCTGCCACCTAAAAAGAAAAGACTTCGGCTGG
CTGAGATAGAGCACTCCTCAACCGAGTCAAGCTTCGAGTCCACTCTGTCCCGGAGTCTCA
GCAGAGAGAGCAGCTTATCCCATGCATCTAGCTTCTCTGCCTCCCTAGACCTAGAAGACA
TTTCTAAAGTAGAGCTGGCCCCCAAAATTGACTTTCCAAGCAAAGCAGAGTTTCTTTTGA
TTCCACTGGGTTCAAACACACTGAGTGTCCCCGGAAGTCACAGGGAAATGAGGCGGGCGG
CATCAGAGCAGATCAGTTGCGTGCCTACACTGATGGAGGTCTCTGATTTCAGAAGTAAGT
CATTCGACTGCGGGAGCATTGCTCCTTCCCACGTGGTGCCAGCACTTGTTGAATCACAGC
CCTCCTACTCCCCATCTGCTGTTGGGGGCACTGCACACGTGCCCCTTCTAGAACGGAGGC
GAGGTCCCCTGATTCGGCAAATATCTTTAAACATAGCTTCAGATAGTCACCTCTCTCCTG
GCAGTGCAGCAGCTCTCCAAACCATTGTTCTTCCTAGTGTGAACACAGTGCCGTTTCAGG
CTCCGAGGCTCCCCGATATGGCTTCTGCTGACTGCCCTGCACATACTGTGTACCCCCAGG
CCCTGGCTAAAGATCTTCAGGCAGAAATTTCAAGTTCCAGCTCTACGGACACATTTCTTC
CTCAACAACTTTTTGGTGCCCATTTATTAAACAAAACCAATACATCCCTTAGTCACCAAA
ACACACCACTGCCTCTGCCAGTGTCTGCACAGGGTGGCAAACCAGATGCAGCACCCACTG
CATGTGTGTCTTCGACAGGGGAGGGTAGCTTTGCTCCCAAGTACCAGCTTCAGTGTCAGG
CCTTCACTTTAGACCAGGGTTGCTCTGCTCCTCTGCGTTCTTCACCTAATCAAGTTCTTC
CAGGTCAAGCTGGAGCAGATCCATGCCCAGCGTCAGAAGCACCGCCAGCCAAAGCAGCCG
ATCCCATGGCTAAACCGTGCCCTCTGCCGCCGCTGGAGCTCGGGCTCCCGAGGGATGAGG
TGCTGCAGAAGCAGCTGCCCTCCTTTGTGCTGCCCGTGCCCCAAAAGAGGAACGTGACAG
TGGACTGTTTCACTCCTGTCACATCTCTGCCACAGATCTTAGTGACCCAGGATCTGCCCA
ACATGCCAATTTGCCAAACTAATCAAAGTCTAGTGCCAGTCAGCGAAGAACAAAATTCCA
TGCCAAAATCACAGAACTATCTCCAAAATGCATCGCCTACACCGGAGAAGGAGCTTGCAT
GCAAAACTGTTCTCCCAGAGGTGGGCCAGAGTGTTCCAGTTTCAGAGTCCTCGCCAATAG
TTCAGAAGGTGTCTGTTGGTAGACTCTCCCCACAACAAGAATCCTCAGCCTCCAGTAAAA
GGATGCTTTCCCCAGCAAATAGTTTAGACATTGCCATGGAAAAGCATCAGAAGCGGGCTA
AAGATGAGAACGGAGCTGTTTGTAGCACAAACATAAGACCGCTGGAGCTGCCAAGCTCAA
GAGCTAATGAGAGCCATAAACAAAAGAAGCCAGTCCTGGTAAGGCAGCTCTGTACTACGG
AGCCCCTTGAAGGAGCTGCGCTGGAACAGGGTGCTTGCTCTGCCTCTGGAAGGAGCAGCA
ACAAGGCTGCTAATTTGACTCAGGTTTTACCAACTGATAGTCTGTCATCCAGACCCTCCA
CGTTTGCAGTCACAGACCATGTCAATGAATTGCAGGAGTTTAAAAACACCAAGTTGTCCA
CATCTCTGACTCCTACAGTGGGAAGTTTCCCTGCTCCATCGGAAAGTGCCTGTGTTTTGC
CTTTGAAGTCTATAGACAACAACCAGGAAAAGGGGTTGCCAGGGGTTAGACATGAAGAGA
ACAAGGTCATCCAAGGGCAGAGGCCGCCTCTAGTGTCTGGTCTTTCATTGGTGAGCAGCT
CAGACACTCAACAGCCGTCATTTCCCAGCCTCAAGACTGCAACTAGCTTTACATGGTGTT
ACCTGCTGAGACAGAAGGCATTGCCGTTGGCTCAGAATGACCAGAAAACTTCAGCCTATA
CGGGGTGGACAGTAAGCTCCAGTAACCCAAATCCACTTGGTTTGCCTACAAAAGTTGCTC
TTTCTCTTCTTAATTCTAAACAGAAGACTGGAAAGTCACTGTATTGCCAAGCAATAACCA
CCCATTCAAAATCAGATTTAGTGGTCTATTCAAGCAAGTGGAAAAACAACTTAAGCAAG
INTRON 4 - 5 42,160,319 42,163,350 3,032
GTACTTGAGATATAATTTATCTTCA..........GTTTCTCTTTGTTTTTCCCTTTCAG
5 EXON 5 42,163,351 42,163,484 0 2 134
AGAGCATTAGGTAATCAAAAGGCCACAGTAGTTGAATTCAGCAATAAAGATGACTCTGAA
ATTAACAGTGAGCAAGATAAAGAAAATTCCTTAATCAAAAGTGAACCAAGAAGAATTAAA
ATATTTGACGGAGG
INTRON 5 - 6 42,163,485 42,164,216 732
GCAAGTACACGCGTTATCCTTCAAT..........TTTTTTTTCTCCTTCTTTAAATTAG
6 EXON 6 42,164,217 42,164,392 2 1 176
ATACAAGTCAAATGAGGATTACGTGTATGTCCGAGGCAGGGGAAGAGGAAAGTACATTTG
TGAAGAGTGTGGAATACGTTGTAAGAAGCCTAGTATGTTGAAGAAGCACATCCGAACCCA
CACAGATGTCCGCCCCTACCACTGCTCTTACTGCAACTTCTCCTTCAAGACGAAAG
INTRON 6 - 7 42,164,393 42,167,561 3,169
GTATGAGCTGCGCATCGCTGCGGTC..........TTAATAGACACTCTTTCCCCTCAAG
7 EXON 7 42,167,562 42,167,663 1 1 102
GAAACCTGACAAAACACATGAAGTCCAAGGCGCACAGTAAGAAGTGTGTGGATTTAGGCG
TCTCGGTGGGCTTGATAGACGAGCAGGACACAGAAGAATCAG
INTRON 7 - 8 42,167,664 42,181,431 13,768
GTAAGCCCTGCTCCGTGCTCCCATC..........CAGATCCTTTTGGTTGTCATATTAG
8 EXON 8 42,181,432 42,181,931 1 0 500
ATGAAAAGCAAAGATTCGGTTGCGAGCGGTCTGGATATGATCTTGAAGAGTCTGATGGCC
CAGATGAGGATGATAATGACAACGAAGAGGATGATGATGACAGCCAAGCAGAGTCTGGTC
TCTCAGCAGCACCCTCAGTCACAGCGAGCCCACAGCATCTCCCATCCAGAAGTGGCCTTC
AGGACCCTGGGAGTGTCGAGGAGGAGCTTAGAGTTTCCAGTTGCTTCTCGGGGGTACATA
CAGACCCAATGGACATTCTACCTAGAGCACTGCTTACCAAGATGACTGTTCTGAGCACAG
TGCAGAGTAGCCCCAACAGGACAGACTTACCAGCAAAGGCCAAGCAGAGTACTGAGAAGG
ATGAGCATGAGCAGGCTCCTCCCGCAGACACCCCCAGGTCCCCCGGCCATCAGCTGTCTG
TGCATTCCTCTGAATCCGATGTCCTGAGAAGTCCTGCAGCTGGAAACCCTGCCGCTGGAA
GCCCTGGGGCTGCAGTACAG
INTRON 8 - 9 42,181,932 42,183,391 1,460
GTAGAGGAGTGTCGGGGGGTGCGGG..........TGGCTCATTGTCTCTTGTCTTTTAG
9 EXON 9 42,183,392 42,185,026 0 - 1,635
GATTCATCTGTGGGGCTGCCCCCTGCCGTAGCCCAGCTCAACCCTCAGCCGGCTGCCAGG
ATTTCTTCCTCAGTCTCACCTCACCCTGACAGTCAAGACCAGAAGCAACAAATAATCTTG
CAACCACCTCCCGGCTTGCCTTCCCCGCAGACACATCTGTTCAGCCATCTCCCCTTGCAT
TCCCAGCAGCAATCAAGGACCCCATACAACATGGTTCCCGTAGGGGGTATCCATGTGGTG
CCTGCCGGCCTCACCTACTCCACTTTTGTACCCATACAGGCCGGGCCAATGCAACTGACC
ATCCCCGCTGTGAGTGTTATTCACAGAACCGTGGGCACCTCTGGGGATACCATCACTGAA
GCTTCGGGCGCTCCTAATCGCCCCACCGGAGTGGCGGAATTGAGCAGTGTTGTGCCCTGT
ATTCCCATAGGCCAAATCCACGTGCCAGGCCTGCAGAACTTAAGTCCCCCGGCCTTGCAG
TCGCTTACGTCCCTGGGGATGGAAACAGTCAACCTGGTGGGCCTGGCAAACGCTACCGTG
GGCCCGCAGGGGCACCCCCCGGGCCTGGCCCTCAACGCAGTGGGGCTCCAGGTTTTGGCC
AACGCGCCCGCCCAGAGCAGTCCCGCCCCACCGGCACACATTCAGGGACTCCAAATCCTC
AACATCGCCTTGCCCACCCTGATCCCCTCCGTTGGCCCGGTGGCTGTGGGCACCACGGGG
ACTCCAGAGACGACTGCTCCCAACAGCAAAGCAATGGAGCTGCAGATGCCCGCAGGCCAG
GGACACAGTGCCGAGCCTCCACAGGGGTCACCCGAAGGCCCTCAGGAAACCCCACAAACA
GTGTCCGGTCCTTCAGCGGACCACGCAAGGCCTGAAGATTCAACCAAAATGGACACCAAG
AAGGGGCCCTCTGCGGGTCATGTGTTGCCCGGGCGCTCCCCTGCGCAGGCGCAGCCAGCA
CCCACACCGGAAGCTTTACAGAAAGTTGCAACTTCAGCTCCTCCATCACTTCCCACAGAC
AGAACGGCTCCCAGGCCCCCAGTGCCCCACAGGCAGCCCATTGTACACTTCAGCGACGTG
AGCAGCGATGATGACGAGGACAGGCTTGTCATAGCAACCTAATGGTTTGTTTTTTACTGA
TTTTTTTTTTTATAACAGGTTTTTTTGAAAAACCCTCCTTTCCTTAAAGCACATTTTTTT
CTGACATAAACTCATGACTAATCTTTGTGCAATCATGAACTTTTGACCAATAATTGTTGT
TTTGTGTTAGTCCCAGCCATTTTTGTATATGTTGTATAGACAATTGTGCCTTTTAGAAGT
TTTATGTTTAGAATCTGTACAGATGGTTGAATATCTATATACATACAATGTTATATATGT
ATATGAAAACCAGGTAGTTGTGTTTAGTAGAAACTTGTCAAATAAATCAGATGACTAAAT
GATATGTTGCACTGTTAAATATAAATTTTTACGGCTGTGGGGCAGTTTCTGTGTATAAAT
TAGTATGTAAACCTCATATTTATTGTATTCATATTAGTCTTTGCAAATGGATCTGTCATT
GTGTGAGACAGTAACTGTACACTTCAGACAGATTTTCTGTGTTATGAACTGTTTCAGTAA
ATACTGTTCACAGGC
3' upstream sequence
TTTACTGGTGCTTACGTCTCGTGCTGTCTTTACACCTCATTGGCAAACAAAGTTCCTAGC
CAGGGCTTTCCATAGCTGCTCCTCAGTTTTGAGAAGCAAAGCTTCCATGGTCTTTCCCTG
TGAAACTGTAGCTAGAGCCCAAAAATCAAGAGATAAAGACAAACTTTTCCTTAGCGTCAG
ATGGAGTTTTATAGCTATTTAATCCTTAGAGAATTGACTACTTAAGGACACTTTCTATAA
ATGTATAAGATGGACCTCCTGAACAGAGCAAAGTCCCCAAATGTGGTTCTAGACAATGTA
AACTCAGTGAGAAACTAATTCTGAGCTCACGGGGCTCCCTCCCAGGCCTTGCCCTGTGTT
CCTTAGCCAAGGGCCTCTAGCTTTCTCAGATACACTTTTATGTGGAGAGTTCTGTCCAGC
ACCAAATCCTGATGGATCCAACAAGGCTTACAAGGAGAAAAACCTAGATGTCTTGCTTAA
GTGACCCTAGAAATGATTGCTTCTACCCTGACGAACCCAGCTATCCGTCAGGCTGGAAGC
TGTCACGTGGTGGGCTGACACCCTTCTCACTGCGGCTGTTTGCCTTATTATCTAAGGGTT
ATTGCAGGTGCTGGGTTTGTGTGGAAAATATTTTTATGTTGGAATTTGAATGCTTAGCAC
ATTAAGGCAGTGTATCATGGGTTTCCATGTTCCCTTCATGAAGACGGCAAGTACGTGAGG
AAGCCAGTGAGATTATGCTATAGGGGAGTGCGAGAAGGCTTTGAAGACCCTGTTAGCCAC
CCTGGGAACCATTTGAGAAACCTTTGAGAAAAGGCACCTGGAACCCCACCTATCTGCCTG
TTAAGACTACCAAGCTGCGCTCCAGTGGCGGCGGGCTCTGGGTCTGGAGTGCTGTGGACA
TGGACTATGCTTTTACTTACAGAGGTACATTTTTGCAGCCTAGGTTCTGAAGTTTCTGCA
GGTAGTGCAGCCTTCCTTCAAAAAAGAATCCTAGAAAACT..........

Sequence Detail Report

Gene Symbol (Gene ID) Hivep1 (ENSMUSG00000021366)
Transcript ID ENSMUST00000060148
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 2689 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information