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Target CDS Information

Gene Symbol (Gene ID) Tmem70 (ENSMUSG00000025940)
Cross Reference
CCDS CCDS56623.1
EMBL AK003839, AK005075, AK008955, ...show all
Fantom 1110020A09, 1500000C19, 2210416J16, ...show all
GO GO:0003674, GO:0005654, GO:0005739, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Tmem70-002
OTTP OTTMUSP00000061780
OTTT OTTMUST00000110683
protein_id AAH11320.1, BAB23030.1, BAB23799.1, ...show all
RefSeq_mRNA NM_027415.2
RefSeq_peptide NP_081691
UCSC uc007ajy.1
UniParc UPI0000022755
Uniprot/SWISSPROT Q921N7
Vega_transcript OTTMUST00000110683, Tmem70-002
Vega_translation 178787, OTTMUSP00000061780
Definition protein_id:ENSMUSP00000070497
translation:
MLLGLGGRWAAGLWPGRTRTTWCVAAALRGSGIAFWRAASLAEPERLRSGGHLALAESCG
PPGRAQIPVCWEQCVRCFHTQVDKPENGRLIYTGNLARTIFGVKCFSYSTSVVSLAFLPY
LLSQNNMMFGSLPLQVLFYGVMGSFTVITPTLLHLLTKGYVIRLYHEATSDTYRAVTYNV
MLSETSTVFHQDDVTIPESAHIFTSFYAKTKSLLVNPALFLNPEDYNHLMGYDKPFTFDM
EEVDEKKLHEGEK

Chromosome 1
Length
Position(start - end)
12,116
16,665,308 - 16,677,425
Orient to Chromosome plus
Link Location : (1:16665308-16677425)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmem70 (ENSMUSG00000025940)
Transcript ID ENSMUST00000065373
Reports
substitution
cSNPs4
Insertion15
Deletion21
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num2
synonymous substitutions 16665388 (p.Ala27Ala), 16665403 (p.Gly32Gly),
non-synonymous substitutions 16665458 (p.Gly51Trp), 16667684 (p.Glu72Gly),
B6 transcript
(ENSMUST00000065373)
MLLGLGGRWAAGLWPGRTRTTWCVAAALRGSGIAFWRAASLAEPERLRSGGHLALAESCG
PPGRAQIPVCWEQCVRCFHTQVDKPENGRLIYTGNLARTIFGVKCFSYSTSVVSLAFLPY
LLSQNNMMFGSLPLQVLFYGVMGSFTVITPTLLHLLTKGYVIRLYHEATSDTYRAVTYNV
MLSETSTVFHQDDVTIPESAHIFTSFYAKTKSLLVNPALFLNPEDYNHLMGYDKPFTFDM
EEVDEKKLHEGEK*
MSMv4 transcript
MLLGLGGRWAAGLWPGRTRTTWCVAAALRGSGIAFWRAASLAEPERLRSGWHLALAESCG
PPGRAQIPVCWGQCVRCFHTQVDKPENGRLIYTGNLARTIFGVKCFSYSTSVVSLAFLPY
LLSQNNMMFGSLPLQVLFYGVMGSFTVITPTLLHLLTKGYVIRLYHEATSDTYRAVTYNV
MLSETSTVFHQDDVTIPESAHIFTSFYAKTKSLLVNPALFLNPEDYNHLMGYDKPFTFDM
EEVDEKKLHEGEK*
homology99.21 (254 / 254)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmem70 (ENSMUSG00000025940)
Transcript ID ENSMUST00000065373
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGGTACACAGGAGGACAATACATTAAGGCTACTAAGAGATCTGCAAATGG
CCCATGATAAATTGGCTCTGGATTTGCAACACTGTAGATTCTTCTATGTCAGTCCGTGGT
AGGCAAGATACACTCCCCACCTTGGACATGATGGGGGCTTTGTTTGTTTGTTCCTTTGGT
TTTTGTTTTTGTTTTTTTGTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGT
CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCC
TCCCGAGTGCTGGGATTAAAGGCGTACGCCACCACACCCAGCTCGGATACAACGTTTTTA
ATGGGGAAAAAAAAAAATCTGTCAACAAAATCGAAAATTATGTGAAAAAATTCCATTTTC
TCCTATCTCAGTGGTGGAATTAAGTTAAATCATTAAATCTTTTTTTTTTTTTTTTTCCCC
CGAGACAGGGTTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCT
GGCCTCGAACTCAGAAATGCGCCTGTCTCTGTCTCCCAAGTGCTGGGACTAAATCATTCA
TTCATTTTGTTAATAGCATATCATAGCATACAACGTATTTAAACATTATAACATTAAGTA
CCTTAAACTACATTCCTTTTGGGCTGATATGCTACAATTACTTCTCATAAGCTAAATCAT
TTTCCCAAACCATTTTTAGGACCTATAAAGTGACTTTCATGAGAACGAAGTATTTAACTA
GGCTTCTGGTCACTGTCTTTTTCACATGCCTACACACTCTGTCCTTGCACACCGTCAAAA
GCCGACCAAATACTAGGAATTCGGTTGAAGCCCATCATCTTAGGCAGGAAGTTGGGGTTT
TGGGTCCTTTGCTGCCTGGAACCCACCAGGTGGAGAAGGTTGCAGGCCGGCCGCATTTTC
TGCGCACGCGCGCGCACCAATCCGGCCGCGTGTTCCGTTTAAGGGGCGGA
1 EXON 1 16,665,210 16,665,505 - 0 296
GCCTCATCGCTCTTGTGGGGGCCACTGTCGAGCGCAGTCGCTTTTGGGTGTCCTTGGCCG
CAGCTGGAAACTGACGGCCACCTTCTCCAACTCGCAGCATGCTGTTGGGGTTGGGCGGCC
GGTGGGCAGCGGGCCTATGGCCGGGCCGGACGAGGACGACGTGGTGTGTGGCCGCCGCAC
TCCGAGGTTCCGGCATCGCTTTCTGGCGTGCGGCCTCGCTAGCCGAGCCAGAGCGGCTCC
GGAGCGGCTGGCATCTAGCGCTAGCCGAGTCTTGCGGGCCACCCGGGCGAGCGCAG
INTRON 1 - 2 16,665,506 16,667,667 2,162
GTCGGCTGTTCGTAGGCTGTGGTGG..........ACTCAATGGTTTCTTGTTTCAGCAG
2 EXON 2 16,667,668 16,667,773 0 1 106
ATACCTGTTTGTTGGGGACAATGTGTCCGCTGCTTCCATACACAAGTTGATAAGCCAGAA
AATGGCAGGCTGATTTATACTGGAAACCTGGCCCGAACGATATTTG
INTRON 2 - 3 16,667,774 16,676,967 9,194
GTGAGTAGTCTGAAGTGAGATTATT..........TCCTCTTATAATTTTTTCCCTTTAG
3 EXON 3 16,676,968 16,678,275 1 - 1,308
GTGTGAAATGTTTCTCTTATTCTACAAGTGTTGTCAGCCTTGCATTCTTGCCGTACCTTC
TCTCACAAAATAACATGATGTTTGGAAGTCTGCCTTTGCAAGTCTTATTTTACGGAGTCA
TGGGAAGCTTCACAGTGATCACTCCCACGCTGCTTCACCTTCTTACAAAAGGCTATGTCA
TTCGGTTGTATCATGAAGCCACAAGTGACACTTACAGAGCTGTCACTTACAATGTTATGC
TTTCGGAAACCAGCACAGTGTTTCACCAAGACGACGTGACAATTCCAGAGAGCGCACATA
TATTCACCAGCTTTTATGCTAAAACAAAATCGCTATTAGTTAATCCAGCACTCTTTTTAA
ACCCTGAAGACTATAACCATCTAATGGGTTATGACAAACCGTTCACTTTTGATATGGAAG
AAGTCGATGAAAAGAAACTGCATGAGGGTGAAAAATGAACCTGTTCTTCATTTGTGCTTA
AATGTCATGTATTTTCAGGGTATAATAAGATTGCCTTTATTTTGTTATTGTTAGTTAATG
ATTGTAGAAACAAAACAAAACAAACAAAAAAGTGTAAGGGCTGAGGACACAGCAATTGGC
ACTGTGTTTGCTGATGTGAGGCCCTAGAATTGGCCTTCATAGAAGCAGGATGCTTTTGTA
CACTTAGAATCCCAGCACATGGGACAGCGAGGTAGGAAGATTAGAAATCTGAGGTCATCC
TTGGTAATGTAGTAGGTTTGAGGTTAGCCTGGACCTTGTCTTAAAAACAGAAGTTGAAAC
TATCAAGCAGAATTTCTGAAAAAATTTTACATGACAATGTTCCTATGTAATAAAATATGT
TTAAATTAAATATGTAAAATGTGGATGGTCATGAATATTCTGGTATATGTATGGCTACAT
TTATTTACTTATATTTTGTTTTTAGACAGAATCTTACTATGTAGACCAGTCTGACCTTGA
ATTCATAGAAATCTATCTGCTTCTGTGTGTGCCACCACATCTGAGCCATGTATGGCGGTA
CATCAGAACCGGAGCGGTGGCTCAGTGGTTAAAAGCACTGGCTGCTCTTCCAGAGGTCCT
GAGTTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATGAGGGGATCTGATGCCCTCT
TCTCGTGTGTGGATGTATATGCAGGAGAGCACTCATACATTAAATAAATAAAGGATTAAG
GCCTTAAATAAATTAAGGCATGCCACCATTACCCAGTATGTGTTTGTTTGGTTTTGGGTT
TTTGTTTGTTTTGTTTTTAGTTTTTTTAATTATTAAAATCTTATGTGT
3' upstream sequence
AAGAGTGTTTTGTTTGCCTCCACAAGCCAGAAAGAGGAGCTCAGTCGCCTTGACCCAGAG
TTGCAGAGCATTGGAAGCTGATCTGTGGGTACTCAGAGCCAAACCCTGGTCCCCCATAAA
AGCAGTGAGTGCTTTTTAACTGAACCATTTCAGCCCCAACATTTTTTTCTTTGTTACAAA
CCAAATTCTTTTATTGGATATTTTCTTTATATACATTTCAAATGCTATTCCGAAAGTTCC
CTATACCTTACCCCCGCCCTGCTCCCCTACCTACCCACTCCCACTTCTTGGCCCTGGCAT
TCCCTGTATTGGGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCACAGTGATGGC
CAACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTGAGGGTACTGGTT
AGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTGCTTTC
TCTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCTTATAGATGACTGCGAGCATCCACTT
CTGTATTTGCCAGGCACTGGCATAGACTCATACGAGACATCTATAATAGGGTCCCTTCAG
CAAAATCTTTCTGGCATATGCAATAGTGTTTGGGTTTGGTTTCAGCCCCAACATTTTAAA
GTAGTTTCAGGATTTCCAATCTTTATAACTTGTTTTAGTCTTAACAACCTCCTCTTGTTG
TCTCTGATGTAGTAAGAGACTTATTTACATGTTTTGGTTGTTTTGAGACAGGGATGCTCA
CTATATAGCTGGCCTTGAATTTGAGCTGCTCATTCTGCCACAGCTTCCTCACTGCTAGGA
TTACAAGCAAGCACCAGCATGCTCACTTAATGTTTATTTTTTTCAACTTCTATTCTCTCA
TACCTTACATCCCATCTGCAGATTTTCCACTCCACCCTCCCACTCTTCTCACCTACCTCC
CCTTTGTTTAAAAAAAAAAAAAAAGCAGGACTACCAGGGA..........

Sequence Detail Report

Gene Symbol (Gene ID) Tmem70 (ENSMUSG00000025940)
Transcript ID ENSMUST00000065373
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 254 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information