MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Omd (ENSMUSG00000048368)

Cross Reference

CCDS	CCDS26504.1
EMBL	AB007848
GO	GO:0005578, GO:0007155, GO:0030500, ...show all
goslim_goa	GO:0005575, GO:0005576, GO:0005578, ...show all
MGI_trans_name	Omd-201
protein_id	BAA22790.1
Reactome	R-MMU-1430728, R-MMU-1630316, R-MMU-1638074, ...show all
RefSeq_mRNA	NM_012050.2
RefSeq_mRNA_predicted	XM_006516928
RefSeq_peptide	NP_036180

RefSeq_peptide_predicted	XP_006516991.1
UCSC	uc007qjq.1
UniParc	UPI0000021BC2
Uniprot/SWISSPROT	O35103

Definition

protein_id:ENSMUSP00000065706
translation:

MGFLSPIYVLFFCFGVRVYCQYEAYRWDDDYDQEPNEDYDPEFQFHQNIEYGVPFYNNIL
GCAKECFCPTNFPTSMYCDNRKLKTIPIIPMHIQQLNLQFNDIEAVTANSFINATHLKEI
NLSHNKIKSQKIDYGVFAKLSNLQQLHLEHNNLEEFPFPLPKSLERLLLGYNEISILPTN
AMDGLVNVTMLDLCYNHLSDSMLKEKTLSKMEKLMQLNLCNNRLESMPLGLPSSLMYLSL
ENNSISSIPDNYFDKLPKLHALRISHNKLEDIPYDIFNLSNLIELNVGHNKLKQAFYIPR
NLEHLYLQNNEIESINVTMICPSPDPVHHHHLTYLRVDQNKLKEPISSYIFFCFPRIHSI
YYGEQRSTNGETIQLKTQVFRSYQEEEEEDDHDSQDNTLEGQEVSDEHYNSHYYEMQEWQ
DTI

Chromosome

Length
Position(start - end)

2,910
49,589,476 - 49,592,387

Orient to Chromosome

plus

Link

Location : (13:49589476-49592387)
/

Detail Map

name	Cenpp (ENSMUSG00000021391)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cenpp note : centromere protein P [Source:MGI Symbol;Acc:MGI:1913586]

name	Omd (ENSMUSG00000048368)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Omd note : osteomodulin [Source:MGI Symbol;Acc:MGI:1350918]

name	Cenpp (ENSMUSG00000021391)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021818

name	Omd (ENSMUSG00000048368)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000065494

name	Cenpp (ENSMUSG00000021391) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26501.1 Uniprot/SWISSPROT:Q9CZ92 RefSeq_peptide:NP_079771 RefSeq_mRNA:NM_025495.3 Uniprot/SPTREMBL:B2RVI6 UCSC:uc007qjk.1 Fantom:1700022C02 Fantom:2810036G11 Fantom:4921518G09 Fantom:4921520E21 EMBL:AK006234 EMBL:AK012863 EMBL:AK014919 EMBL:AK076577 EMBL:BC094280 EMBL:BC147207 EMBL:BC147208 EMBL:CH466546 GO:GO:0000775 GO:GO:0003674 GO:GO:0005515 GO:GO:0005575 GO:GO:0005634 GO:GO:0008150 GO:GO:0034080 MGI_trans_name:Cenpp-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005694 goslim_goa:GO:0006461 goslim_goa:GO:0008150 goslim_goa:GO:0022607 goslim_goa:GO:0043226 goslim_goa:GO:0051276 goslim_goa:GO:0065003 protein_id:AAI47208.1 protein_id:AAI47209.1 protein_id:BAB24472.1 protein_id:BAB28519.1 protein_id:BAB29620.1 protein_id:BAC36401.1 protein_id:EDL41079.1 Reactome:R-MMU-162582 Reactome:R-MMU-1640170 Reactome:R-MMU-194315 Reactome:R-MMU-195258 Reactome:R-MMU-2467813 Reactome:R-MMU-2500257 Reactome:R-MMU-2555396 Reactome:R-MMU-5663220 Reactome:R-MMU-606279 Reactome:R-MMU-68877 Reactome:R-MMU-68882 Reactome:R-MMU-68886 Reactome:R-MMU-69278 Reactome:R-MMU-73886 Reactome:R-MMU-774815 UniParc:UPI0000027672
definition	note : transcript_id=ENSMUST00000021818 protein_id : ENSMUSP00000021818 translation : MDSETRELRALEAEVAALQRECRMLQNAGEKASGAWKSFQKISQSDSEEWESLKDLRSQLEHLRSEHSFLSKLTGFNIRNYSKMEDIVNTEETEKDTKKVLQKHRLSGNCNMVTFQLEFEVLEMETKEKKSSIITDLSIIMEPTEYSELSEFASRAEEKRDLLMFFRSLHFFVEWCEYRENTFKHFKEKYPDTVYLLEGTCSHCMEIRSTRQPGFELVIVWKIQIDEEGMVFPKLDLLTKVPERALGLDKNRVIETAPLSFRSLLGVLGIEAALDSLIRLFSGDNN

name	Omd (ENSMUSG00000048368) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26504.1 Uniprot/SWISSPROT:O35103 RefSeq_peptide:NP_036180 RefSeq_mRNA:NM_012050.2 RefSeq_mRNA_predicted:XM_006516928 RefSeq_peptide_predicted:XP_006516991.1 UCSC:uc007qjq.1 EMBL:AB007848 GO:GO:0005578 GO:GO:0007155 GO:GO:0030500 GO:GO:0070062 GO:GO:0070062 MGI_trans_name:Omd-201 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005578 goslim_goa:GO:0007155 goslim_goa:GO:0008150 goslim_goa:GO:0043226 protein_id:BAA22790.1 Reactome:R-MMU-1430728 Reactome:R-MMU-1630316 Reactome:R-MMU-1638074 Reactome:R-MMU-2022854 Reactome:R-MMU-2022857 Reactome:R-MMU-71387 UniParc:UPI0000021BC2
definition	note : transcript_id=ENSMUST00000065494 protein_id : ENSMUSP00000065706 translation : MGFLSPIYVLFFCFGVRVYCQYEAYRWDDDYDQEPNEDYDPEFQFHQNIEYGVPFYNNILGCAKECFCPTNFPTSMYCDNRKLKTIPIIPMHIQQLNLQFNDIEAVTANSFINATHLKEINLSHNKIKSQKIDYGVFAKLSNLQQLHLEHNNLEEFPFPLPKSLERLLLGYNEISILPTNAMDGLVNVTMLDLCYNHLSDSMLKEKTLSKMEKLMQLNLCNNRLESMPLGLPSSLMYLSLENNSISSIPDNYFDKLPKLHALRISHNKLEDIPYDIFNLSNLIELNVGHNKLKQAFYIPRNLEHLYLQNNEIESINVTMICPSPDPVHHHHLTYLRVDQNKLKEPISSYIFFCFPRIHSIYYGEQRSTNGETIQLKTQVFRSYQEEEEEDDHDSQDNTLEGQEVSDEHYNSHYYEMQEWQDTI

name
type	STS
link
xref	UniSTS_NUM:160297 UniSTS:AB007848 WI_MRC-RH:244252
definition	note : map_weight=1 standard_name : AB007848

name
type	misc_feature
link
xref
definition	note : contig AC160978.4 1..121305(-1)

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Omd (ENSMUSG00000048368)
Transcript ID	ENSMUST00000065494

Reports
substitution
cSNPs	2
Insertion	12
Deletion	14
SNPs	-1kb 49578008(c.-11468T>A), 49578105(c.-11371T>C), 49578198(c.-11278A>T), 49578295(c.-11181T>C), 49578823(c.-10653A>G), 49578907(c.-10569T>C), 49579187(c.-10289C>T), 49579631(c.-9845C>T), 49579785(c.-9691A>G), 49579829(c.-9647G>A), 49579850(c.-9626G>A), 49580326(c.-9150C>T), 49580431(c.-9045A>G), 49580539(c.-8937G>A), 49580668(c.-8808C>T), 49580686(c.-8790C>T), 49580828(c.-8648C>T), 49581258(c.-8218C>T), 49581585(c.-7891G>A), 49582168(c.-7308T>A), 49582208(c.-7268C>G), 49582554(c.-6922C>A), 5'UTR CDS 49589886(c.411C>T), 49590002(c.527T>C), 3'UTR 49582786(c.-42G>A), 49592443(c.56G>C), 49592531(c.144C>T), INTRON 49582898(c.-15+85A>T), 49583202(c.-15+389T>A), 49583317(c.-15+504C>T), 49583353(c.-15+540T>C), 49583933(c.-15+1120A>G), 49584195(c.-15+1382C>T), 49584542(c.-15+1729C>T), 49584552(c.-15+1739C>T), 49584602(c.-15+1789C>T), 49584767(c.-15+1954C>A), 49584824(c.-15+2011A>C), 49584980(c.-15+2167T>A), 49585471(c.-15+2658A>G), 49586202(c.-14-3260T>A), 49586417(c.-14-3045A>T), 49586560(c.-14-2902A>T), 49586668(c.-14-2794G>A), 49586726(c.-14-2736G>T), 49586750(c.-14-2712C>G), 49586921(c.-14-2541T>C), 49586987(c.-14-2475G>A), 49587029(c.-14-2433A>G), 49587197(c.-14-2265G>C), 49587280(c.-14-2182G>A), 49587548(c.-14-1914T>C), 49587925(c.-14-1537G>A), 49587950(c.-14-1512T>C), 49588153(c.-14-1309C>T), 49588196(c.-14-1266C>T), 49588542(c.-14-920T>C), 49588662(c.-14-800A>G), 49588802(c.-14-660A>C), 49588880(c.-14-582A>C), 49589255(c.-14-207C>T), 49589332(c.-14-130G>A), 49590428(c.940+13T>A), 49591810(c.941-246G>A), 49591892(c.941-164A>G), +1kb 49592634(c.247C>A), 49592710(c.323T>A), 49592731(c.344C>T), 49593009(c.622C>T), 49593015(c.628C>T), 49593160(c.773G>A), 49593240(c.853C>A), 49593247(c.860G>A), 49593254(c.867C>A), 49593317(c.930G>T), 49593324(c.937C>T), 49593466(c.1079G>A), 49593516(c.1129C>A), 49593665(c.1278G>A), 49593782(c.1395T>C), 49593807(c.1420C>A), 49593827(c.1440G>C), 49594064(c.1677C>T),
Insertions	-1kb 49578297 (c.-11179_-11178insACTTC), 49579646 (c.-9830_-9829insTTAGTTGG), 49580278 (c.-9198_-9197insTTTTCTTT), 5'UTR CDS 3'UTR INTRON 49583060 (c.-15+247dupT), 49583182 (c.-15+376_-15+378dupAAA), 49584980 (c.-15+2172_-15+2173dupAA), 49586808 (c.-14-2655_-14-2654dupCC), 49587338 (c.-14-2119dupA), 49588840 (c.-14-623_-14-622dupTT), 49590436 (c.940+30_940+31dupAA), 49590894 (c.940+487dupT), +1kb 49593988 (c.1601_1602insA),
Deletions	-1kb 49577853 (c.-11622_-11621delTC), 49578824 (c.-10651delA), 49580102 (c.-9373_-9368delACTCCC), 49580896 (c.-8579delT), 5'UTR CDS 3'UTR INTRON 49583365 (c.-15+553_-15+558delGTATGT), 49583373 (c.-15+561_-15+562delGT), 49585798 (c.-15+2993delA), 49586736 (c.-14-2725_-14-2723delCGC), 49587605 (c.-14-1848_-14-1846delTTT), 49587861 (c.-14-1598_-14-1591delACTGGTCT), 49588918 (c.-14-542_-14-540delCTG), 49589121 (c.-14-325_-14-323delTTT), +1kb 49593670 (c.1284_1286delAAA), 49593987 (c.1601_1605delGAAAA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	1
synonymous substitutions	49589886 (p.Phe137Phe),
non-synonymous substitutions	49590002 (p.Ile176Thr),
B6 transcript (ENSMUST00000065494)	MGFLSPIYVLFFCFGVRVYCQYEAYRWDDDYDQEPNEDYDPEFQFHQNIEYGVPFYNNIL GCAKECFCPTNFPTSMYCDNRKLKTIPIIPMHIQQLNLQFNDIEAVTANSFINATHLKEI NLSHNKIKSQKIDYGVFAKLSNLQQLHLEHNNLEEFPFPLPKSLERLLLGYNEISILPTN AMDGLVNVTMLDLCYNHLSDSMLKEKTLSKMEKLMQLNLCNNRLESMPLGLPSSLMYLSL ENNSISSIPDNYFDKLPKLHALRISHNKLEDIPYDIFNLSNLIELNVGHNKLKQAFYIPR NLEHLYLQNNEIESINVTMICPSPDPVHHHHLTYLRVDQNKLKEPISSYIFFCFPRIHSI YYGEQRSTNGETIQLKTQVFRSYQEEEEEDDHDSQDNTLEGQEVSDEHYNSHYYEMQEWQ DTI*
MSMv4 transcript	MGFLSPIYVLFFCFGVRVYCQYEAYRWDDDYDQEPNEDYDPEFQFHQNIEYGVPFYNNIL GCAKECFCPTNFPTSMYCDNRKLKTIPIIPMHIQQLNLQFNDIEAVTANSFINATHLKEI NLSHNKIKSQKIDYGVFAKLSNLQQLHLEHNNLEEFPFPLPKSLERLLLGYNEISTLPTN AMDGLVNVTMLDLCYNHLSDSMLKEKTLSKMEKLMQLNLCNNRLESMPLGLPSSLMYLSL ENNSISSIPDNYFDKLPKLHALRISHNKLEDIPYDIFNLSNLIELNVGHNKLKQAFYIPR NLEHLYLQNNEIESINVTMICPSPDPVHHHHLTYLRVDQNKLKEPISSYIFFCFPRIHSI YYGEQRSTNGETIQLKTQVFRSYQEEEEEDDHDSQDNTLEGQEVSDEHYNSHYYEMQEWQ DTI*
homology	99.76 (424 / 424)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Omd (ENSMUSG00000048368)
Transcript ID	ENSMUST00000065494

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AAATAAATCCTCTAGGTTACTTATAAAGTCTAATAGAAAACACTGTTTTG AAGAACCAAAACTTCTCAAGCTTGAAAGAATGTCTTTCCAAAAAACTCAACAGCTGATGC CAAGAGACACAGCTAACTCTGTTTAACTATGAAAACATTAGCACAAAAATGTAGCCTTGC AGTAAGCAGGCTTGCTAGCTGCAACTCTTAAGGAGGGCTCCTTCAGCAAATGAAGAAAGT TTCTAAATCCATACAATAAAAGGTAGAAGAAGTGACTGAGCAGCAGAGGCTTTTATTCGA TCCCACTTAAAGACAAAGTGGACTATAAAATTATTTTGTGTACTGAGCCGAAAGGCAAGG CACTAGCATACATAGCTGAGGGAATTCATTTCTCTTTAAAAGTTATTAGTAGACTTTATA AGTGGGAAAGCTGTGCCTTTAATCTGTGAAACGAATGCACTCTACTGCATTCTCAAAGTA AACTAGATGTGAAATGCTGTATGTTTCCACTTCTGATTCTTAGTCAAGAGTCAAAGGAAA GCACTGATGTGAATGCAAGCCTCTGTCAACCCAGGAACCGGATACAATTTTGAATTCCAC CTTAAATTGCTGAGACACTGGGCTCCAGGTCACAGTGGACTTTAATCTGAAGAATTCTTT GGCATAAAAATGAAAATAAAAACAGTAATCAGTACATGTTGTTTCATTTAGTCTTGTTTG CCTTTCATATTAAGAGAAAATTCTTGCCACACCTCAAACCAAAATTAAGGAGAAAAGAAA GAAGTTAGCCACATAAATATGACCAAGAGCACAAACATCTTACTTTGAATCCACAAAATT CTGTATAATGAAAAGAAGTACAAAATTTTAATTCAACCCAAGTGTTTTCCAAGCAGATTG TATTTACTTAAATTGCTCCAGTAATTCAAAGGACAGCCCTGTCTGCACACTGAGTTACTG TGGATTTTTAAGAAACTTCGCTAAAGAATTTAGGCATTTCTGATTCAGTT
1	EXON 1	49,582,766	49,582,813	-	-	48	AAAGGATTGCCAATTCATCAATCCCTGAAACTAGAGCAATCTCAACAG
	INTRON 1 - 2	49,582,814	49,589,461			6,648	GTATGATGATAAAGTAATTTTCAAC..........TTAATCAATTTTCTCTTTGCAATAG
2	EXON 2	49,589,462	49,590,415	-	1	954	GACAAGAAAAGAAAATGGGCTTTTTAAGTCCAATATATGTCCTTTTCTTCTGTTTTGGAG TTAGAGTATACTGCCAATATGAAGCTTACCGATGGGATGACGATTATGACCAAGAGCCAA ATGAGGATTATGATCCAGAATTCCAATTTCATCAAAATATTGAATATGGAGTTCCCTTTT ATAATAATATTTTAGGTTGTGCTAAGGAATGCTTCTGTCCAACTAACTTTCCAACATCAA TGTACTGTGACAATCGTAAACTCAAGACTATCCCAATTATTCCAATGCACATTCAGCAAC TCAACCTTCAGTTCAATGACATTGAGGCTGTGACTGCAAATTCATTCATCAATGCAACTC ATCTTAAAGAAATTAACCTTAGCCACAACAAAATTAAATCTCAAAAGATTGATTATGGTG TATTTGCTAAACTTTCAAATCTACAACAACTTCATCTAGAGCACAATAACCTAGAAGAAT TTCCATTTCCACTTCCAAAATCTTTGGAAAGACTCCTTCTTGGTTATAATGAAATCTCCA CACTTCCAACAAATGCCATGGACGGGCTGGTGAATGTGACTATGCTTGACCTCTGCTATA ATCATCTTTCTGATTCGATGTTAAAAGAAAAGACCCTTTCCAAAATGGAAAAATTAATGC AGCTCAACCTATGTAATAACAGATTAGAATCAATGCCCCTTGGATTGCCTTCATCACTTA TGTATCTATCTTTAGAAAATAATTCAATTTCATCTATACCAGACAATTATTTTGACAAAC TTCCAAAACTTCATGCTCTAAGAATATCACACAACAAACTGGAAGACATTCCATATGACA TCTTTAATCTTTCCAATCTTATAGAACTCAACGTTGGACACAATAAATTGAAGCAAGCAT TCTACATTCCAAGGAATTTGGAACATCTATACCTACAAAATAATGAAATAGAAA
	INTRON 2 - 3	49,590,416	49,592,055			1,640	GTATGCAAATTTTTTGCATTTAAAA..........TAAACTTTTGACTTGTATTTTTCAG
3	EXON 3	49,592,056	49,592,609	1	-	554	GCATCAATGTGACAATGATATGTCCTTCTCCTGATCCAGTACACCATCACCATTTAACAT ACCTTCGTGTGGACCAAAATAAGCTGAAAGAACCAATAAGTTCATACATCTTCTTCTGCT TCCCTCGTATACACAGTATTTATTATGGTGAGCAGAGGAGTACTAACGGTGAAACAATTC AACTGAAGACCCAAGTTTTCAGGAGCTACCAAGAGGAGGAAGAGGAAGACGACCATGACA GTCAGGACAACACTCTTGAGGGTCAAGAAGTATCAGATGAGCACTATAATTCTCATTACT ATGAGATGCAAGAGTGGCAAGATACTATATAGGTACACATTTATGCCTCCATAAAGCCTT ACTAATTACAAATGTAAACATGTAACTCCTCATAATAATATATCTACAAGTATGTGTTAG TATAAAGATCAGAACTGCATTTAAGATGTTGGTGAAAATGGCTTTACTTCATAAGTTTAG AGCTTACTAAAAATGATGCAAATCTTAAGAAATATAAAATAGAATGGTAAGTGGGAATAA AAAAAACTAAGCTC
	3' upstream sequence						AAATGGCTTTGTATATTCTTTAAAATTAGAAATATTATCATGCAAAAACTTGTAAGGGCC AGCAAGATGGTTCAGCAGATAAAGCATTTACTACCGAGCCAGACGACTTTGAGTAGAGAG ATTCAATTCCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCT GACAATGACGATGATAAATTACATAAAATCCTCTTGAGTATGTCATCACTTCCAATACTT TTCCTAGGGATGATCAAGTTAAGTAACACTGCTGGTGAAGACACAGCTGTCCTCTCCACC TGAAGGGGACATGAGACAATGGGGGAATGTTGACTTAACAGTAGTCTTTCACTCAAGAAA GATGATTTTTAGTGGCTTTCACATTGTATTTTTATTCTCTCTCTCTTCTCCTCTCCTCTC CTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCTCCTTTCCTCTCCTCTCTTT TCCCCACCCCGCCTCCTCTCTCCTCTGTCCCCTCTCCTACTCTCTCTCCTCCCCTTCTCT CTGAGACAGGATTTCTCTGTGTAGTCCTAGCTTTTCTGGAACTTGCTCTGTAGACCTGGC TGACCTAAATACCTCCCTGTACCTCTGCTTACTGAGTAATGAGAATAAAAGTGCATGCTA CATTTGTATTTCTAATAAGATATGCGGCACTGGTTCAGCACTCAGAATGGAATGTTTTGA CTTTCTGAGTTACCATCCTAAGATCTAAGGCAAAAATTTCAGGAACATAAGTGCTTTTCT CTCAGAGGACCAGATGAAACAAATTATCTGAGACATGAGATACAGCTAGGAGTAGAGCCT TAGACAGGTCACGCCTATCAGGCCTCAGGCCACTCTTTGCTAGTGACTGTGAGAATGTAA CATTCAAGTTCTTCAGTTCACTTTTAAAGTATTTTAAGTAAGCTTTAAGGTAAATATTCT AACTGTTGTGATGAATTCTTTTATTTAGCAGGCATCAATG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Omd (ENSMUSG00000048368)
Transcript ID	ENSMUST00000065494

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 424 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information