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Target CDS Information

Gene Symbol (Gene ID) Phactr1 (ENSMUSG00000054728)
Cross Reference
EMBL AC140415, AC154505, AC164878, ...show all
Fantom C130040I10
GO GO:0003779, GO:0004864, GO:0005634, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Phactr1-002
OTTP OTTMUSP00000032429
OTTT OTTMUST00000065149
PDB 4B1U, 4B1V, 4B1W, ...show all
protein_id AAH48407.1, AAH61691.1, AAY42814.1, ...show all
UCSC uc007qfq.1
UniParc UPI0000D720CD
Uniprot/SWISSPROT Q2M3X8
Vega_transcript OTTMUST00000065149, Phactr1-002
Vega_translation 214390, OTTMUSP00000032429
Definition protein_id:ENSMUSP00000066663
translation:
MCVSLLLSPPPPFRLSPSPSLHLLLLSARRATLLLPPTLMAASSEDDIDRRPIRRVRSKS
DTPYLAEARISFNLGAAEEVERLAAMRSDSLVPGTHTPPIRRRSKFANLGRIFKPWKWRK
KKSEKFKHTSAALERKISMRQSREELIKRGVLKEIYDKDGELSISNEDDSLENGQSLSSS
QLSLPALSEMEPVPMPRDPCSYEVLQASDIMDGPDPGAPVKLPCLPVKLSPPLPPKKVLI
CMPVGGPELTLASYAAQKSSQQAVAQHHHTVLPSQMQHQLQYGSHGQHLPSSTGTLPMHP
SGCRMIDELNKTLAMTMQRLESSEQRVPCSTSYHSSGLHSSDGITKAGPMGLPEIRQVPT
VVIECDDNKENVPHEPDYEDSPCLYGREEEEEEEDEDDDASLYTSSLAMKVCRKDSLAIK
LSNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQ
EEQEEKREIKRRLTRKLSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADKPWTRLTA
ADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP

Chromosome 13
Length
Position(start - end)
425,566
42,709,622 - 43,135,189
Orient to Chromosome plus
Link Location : (13:42709622-43135189)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Phactr1 (ENSMUSG00000054728)
Transcript ID ENSMUST00000066928
Reports
substitution
cSNPs2
Insertion307
Deletion395
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 42956756 (p.Ser123Ser), 43096669 (p.Val411Val),
non-synonymous substitutions
B6 transcript
(ENSMUST00000066928)
MCVSLLLSPPPPFRLSPSPSLHLLLLSARRATLLLPPTLMAASSEDDIDRRPIRRVRSKS
DTPYLAEARISFNLGAAEEVERLAAMRSDSLVPGTHTPPIRRRSKFANLGRIFKPWKWRK
KKSEKFKHTSAALERKISMRQSREELIKRGVLKEIYDKDGELSISNEDDSLENGQSLSSS
QLSLPALSEMEPVPMPRDPCSYEVLQASDIMDGPDPGAPVKLPCLPVKLSPPLPPKKVLI
CMPVGGPELTLASYAAQKSSQQAVAQHHHTVLPSQMQHQLQYGSHGQHLPSSTGTLPMHP
SGCRMIDELNKTLAMTMQRLESSEQRVPCSTSYHSSGLHSSDGITKAGPMGLPEIRQVPT
VVIECDDNKENVPHEPDYEDSPCLYGREEEEEEEDEDDDASLYTSSLAMKVCRKDSLAIK
LSNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQ
EEQEEKREIKRRLTRKLSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADKPWTRLTA
ADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP*
MSMv4 transcript
MCVSLLLSPPPPFRLSPSPSLHLLLLSARRATLLLPPTLMAASSEDDIDRRPIRRVRSKS
DTPYLAEARISFNLGAAEEVERLAAMRSDSLVPGTHTPPIRRRSKFANLGRIFKPWKWRK
KKSEKFKHTSAALERKISMRQSREELIKRGVLKEIYDKDGELSISNEDDSLENGQSLSSS
QLSLPALSEMEPVPMPRDPCSYEVLQASDIMDGPDPGAPVKLPCLPVKLSPPLPPKKVLI
CMPVGGPELTLASYAAQKSSQQAVAQHHHTVLPSQMQHQLQYGSHGQHLPSSTGTLPMHP
SGCRMIDELNKTLAMTMQRLESSEQRVPCSTSYHSSGLHSSDGITKAGPMGLPEIRQVPT
VVIECDDNKENVPHEPDYEDSPCLYGREEEEEEEDEDDDASLYTSSLAMKVCRKDSLAIK
LSNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQ
EEQEEKREIKRRLTRKLSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADKPWTRLTA
ADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP*
homology100.00 (574 / 574)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Phactr1 (ENSMUSG00000054728)
Transcript ID ENSMUST00000066928
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GAAGATTCAGGAAGACAAACATAAAGGGGTTTAGCTCATCAATAGGTCCA
GCGGCAGCATCAAACGGGTGCTGATCACACCCCTGGAAAGCCTTCTGGTTCTTTTGCTGT
GTTTTGTGGAGTGTTACAGTCAGACAGTACAAAGGTTCAAAGGAATCCAAGGCCCTTTGA
TGGCCACCTCTCCTTCAGGAATAATGGTGCAGAGCTGCAGAAGCAAAGTCCAGTGCACAC
ATCGTTATTTGTATGAGATGTGACTGACAGAAAGAGTTGAAGGTTCACATAAGTAGGTAT
GATGTAGACAGAGAACCACATCTTACAACTTAGTGGGTGTAGAAGAGGACCATTGGTTCT
GTGAATAAGCCTGGTCTACATTGAAAATATCAATTATGAAACCCATCCTACCAAACTTGT
CTACACTCTTCCTCCACTTCCCACCTCTAAATTGTAAGGGGCAGATAAGAGAGTTTCCAA
CCATGCCACGATCTGTTTCGAACTTTATTTGTGCTTCTGGTTTGGGACAGATAGGACAGG
GGACTTGTCCTGGAAATGGTAGGTGTCCTGCTCCTGAGGCCAAGGGGCAAGAGTGAGGGG
CTCCAGGAGTGGCAGCTGGAAGCATAAAAGCTGGGTTCTGTGGTCCCGAGGCAGCCTCAG
GCTAGAGAGTCCCCTGGGATCTTGGAGACTGTATTCGCCTGCATGTGAAAGGCGAGGAAG
CGTATTTGGCGGGAGAGGGCACAGTGCTGACTGGGCATCTTGGCTTGGGAGTCTTCCTAT
TCGCATTAGCCTATCTGTGCCAGTGGCTGAAACAGGGCTGCGGCAGGAGGCGTGGTGTTG
ATCCAGAGCACTGACCCCTTGGCCCAGCATTGGGAGAGGAGTTAGGGGGAGCCCCGGGTA
CAGATCAGGGCTAACCTGATCTTGCTCCAGTCCGCCAATCCTTAACGGATTTTCTTTCTC
TCCTTTCACCCTTTTCTCTGCTCTCTTTCTCTCTTTCTTTCTCTTCCTCT
1 EXON 1 42,709,543 42,709,850 - 1 308
TTTCCCCTCTTTCCCTCTCTCCCCCCTCCCTCCCTGTCCCCTTCCCCTCCTCTCCTTCTC
CCCTCCCCTCCCCCTTTCTATGTGTGTGAGCCTCCTCCTTTCCCCTCCTCCCCCTTTCCG
CCTCTCTCCCTCCCCCTCTCTCCATCTCCTTCTCCTCTCAGCTCGCCGGGCGACCCTGCT
CCTGCCTCCCACATTAATGGCGGCTTCTTCGGAGGATGACATAGACCGGCGGCCCATCAG
AAGAGTCCGCTCCAAGAGCGACACGCCATATCTCGCAGAGGCCAGGATCTCCTTTAACCT
GGGGGCAG
INTRON 1 - 2 42,709,851 42,956,616 246,766
GTAAGGACACCCCTCGCCTTCCTCT..........CCATCACTTTCTTGGGAAAAACAAG
2 EXON 2 42,956,617 42,956,781 1 1 165
CCGAGGAAGTGGAGAGGCTGGCAGCCATGCGTTCCGACTCGCTGGTCCCAGGTACGCACA
CCCCGCCCATCCGGAGGAGGAGTAAGTTTGCCAACCTGGGGAGGATTTTCAAACCCTGGA
AATGGAGGAAGAAGAAAAGCGAAAAGTTCAAGCACACGTCAGCAG
INTRON 2 - 3 42,956,782 43,037,449 80,668
GTAAGGTGGCTGCTGGCCTTGTTTC..........CTCTCTCTCTGGCTCTTGCTTGCAG
3 EXON 3 43,037,450 43,037,530 1 1 81
CTCTGGAAAGGAAGATTTCGATGAGGCAGAGCAGAGAGGAGCTGATCAAGAGAGGGGTCT
TGAAGGAGATCTACGATAAAG
INTRON 3 - 4 43,037,531 43,057,178 19,648
GTAAGGGGCTGTCTGCTGGCCACAG..........TACTACCATCTCTTCCTTCCCACAG
4 EXON 4 43,057,179 43,057,346 1 1 168
ATGGAGAACTCTCTATATCAAATGAAGATGACTCCCTGGAGAACGGACAGTCCCTGAGCT
CCAGCCAACTCTCTTTGCCTGCTCTGTCGGAAATGGAGCCTGTCCCAATGCCCAGGGACC
CATGCTCATATGAGGTGCTCCAAGCTTCAGACATTATGGATGGACCAG
INTRON 4 - 5 43,057,347 43,077,654 20,308
GTAATGACATGGCACAGGCCTGGGG..........CTTCTCAACCCTCCTTCTGCCGCAG
5 EXON 5 43,077,655 43,077,976 1 2 322
ATCCTGGCGCCCCTGTGAAATTGCCTTGTCTGCCAGTGAAACTGTCGCCTCCGCTACCTC
CAAAGAAAGTCCTGATCTGTATGCCTGTAGGGGGGCCAGAGCTCACTCTGGCATCCTATG
CAGCCCAGAAGAGCAGCCAGCAGGCCGTGGCCCAGCACCACCACACCGTCCTACCATCCC
AGATGCAGCACCAGCTGCAGTATGGCAGTCACGGCCAGCATCTCCCATCCTCCACCGGCA
CCTTGCCCATGCACCCCTCAGGCTGCAGGATGATCGACGAGCTGAACAAGACACTCGCCA
TGACGATGCAGAGGCTGGAAAG
INTRON 5 - 6 43,077,977 43,094,748 16,772
GTAACGGGGGGGGCGGGGGCTTGCT..........TCCCCTTTCTTTTCTTTTCATGCAG
6 EXON 6 43,094,749 43,094,996 2 1 248
CTCCGAGCAACGAGTCCCCTGTTCCACGTCTTACCACAGTTCTGGTTTGCACTCAAGCGA
CGGCATCACAAAAGCAGGACCCATGGGCCTTCCGGAAATAAGACAAGTGCCAACTGTTGT
GATTGAATGTGATGACAATAAGGAAAATGTGCCTCATGAACCCGACTATGAAGACTCGCC
CTGCCTGTATGGCCGGGAGGAGGAGGAAGAGGAGGAAGATGAAGATGATGACGCCTCTTT
GTACACCA
INTRON 6 - 7 43,094,997 43,096,649 1,653
GTACGTGCAGGCAGGCTGTCCGTGA..........ACTGACTGATTTCTCCCTCCTCCAG
7 EXON 7 43,096,650 43,096,806 1 2 157
GCTCACTGGCCATGAAGGTCTGCAGGAAGGACTCCTTAGCCATCAAACTCAGCAACAGGC
CCTCTAAGCGAGAGCTAGAAGAAAAGAACATCCTCCCCAGACAGACGGATGAGGAACGGC
TGGAGCTCAGACAGCAGATTGGCACCAAGCTCACCAG
INTRON 7 - 8 43,096,807 43,122,998 26,192
GTAAGAAAGCAGCAGCCCCGCCCGT..........AACTTTTCTTGGATTTTTTCCGTAG
8 EXON 8 43,122,999 43,123,054 2 1 56
GCGGCTGAGCCAGAGACCAACTGCAGAGGAACTGGAACAGAGGAACATTTTGAAGC
INTRON 8 - 9 43,123,055 43,128,137 5,083
GTAAGTCGGTGAAGCCCAGGGTGAC..........AGAGGTATCTTCCATTTATTTTCAG
9 EXON 9 43,128,138 43,128,199 1 0 62
CTCGGAATGAACAAGAAGAACAGGAGGAGAAGCGGGAAATCAAGAGGAGGCTGACTCGCA
AG
INTRON 9 - 10 43,128,200 43,132,919 4,720
GTAAGGCGGTCCCCCTTCCCCGGAG..........GCCCCACTTTTTCCCCTCCCTGCAG
10 EXON 10 43,132,920 43,133,060 0 0 141
CTCAGCCAAAGGCCCACAGTGGAAGAACTCCGGGAGAGGAAGATCCTTATCCGCTTCAGT
GACTACGTGGAAGTGGCAGATGCCCAAGACTATGACCGAAGGGCAGACAAGCCATGGACC
CGCCTCACCGCTGCAGACAAA
INTRON 10 - 11 43,133,061 43,133,926 866
GTAAGCAGAGGCCAGGAGAAAGGGA..........TGACCAGCTGCTATTATTCTTCCAG
11 EXON 11 43,133,927 43,134,003 0 2 77
GCTGCCATTCGGAAGGAACTCAATGAGTTTAAAAGTACCGAGATGGAAGTCCACGAGTTA
AGTAGACACTTAACCAG
INTRON 11 - 12 43,134,004 43,135,173 1,170
GTTAGTTCTGACGATGTCTGGCTCC..........CTTGACAACATTTCTTGTTCCCCAG
12 EXON 12 43,135,174 43,135,401 2 - 228
GTTTCATCGACCTTAACAGTGGGATTACTCTTGAGTGCTCTGCTGTCTTCAAAACATAAA
TTTCTAAGAACCATAAGTGCTGGCGTCTGTCCACTTCCCCGTTACCATGTAAATCCGAAC
TGCCTTTTTTTAAAAAAGAGCGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGGAAGGAAAAAGGAAGAAGAAAGGAAA
3' upstream sequence
GGAAACACAGCCAGGATTCTGTGTGCAGGAACACCATGGTGAGCACTCCTCAGCATTGCT
GGCACCATTTCTGCTACAGAAAGGTGACCCGGCCCCCCGAGACAGGGACCTACCTGAGGA
TTGTCCAGAAACCACCTTGTCCCCTCCATCCAGACCCAGCAAGCACCACATTGGTTCAGT
CTTCGGTGAATCCCTTCCTCACAAGGGACTGTTGCCTGAGTCCAAAGAAGCCCAGGGCTT
GACATGGGAATGGCTAGGGTGACAGTCATAATCCAACTGCCCTTCTAGACGTGGTCAGAC
ACATGGGCTCCAGATGGGGCATCTGCTTTGGGGGCCCTTGGGAAGGGGGTGACGACCTCT
CAGTCTCCTCCACACATACACAGGCACACCCACGCACGAACATGTGCACACACAAACACA
CATGCTTTCTTTTCAGATTTGTCCTGGAGGAGCCTGTGTTGGCACTTCAGTCATACCCAT
GTGTGCTGTGGGCATAGGAGGCTAAACCTGAGCGTCCACTTTGACCCCCATCCCAAACTG
AACTGCCTTCCAGAAGACTCTGGTAAGGATAGTAGACATCTGCTCAGTTCACATTCATTG
ACCAGTTTGTGTTCACAAAGCCCAGGGCTATGGGTGATCTAATGCTTTAATGCCCTTGCC
AAGGTTCCCTGTGATATTCATGAGTGTGAACTGACCAGGGAGCCATCAACCCCATGGGCC
ACAGTTTTCTTTGACCCTGTAGCACACCTGGGCCAGTGGTGATGTGGCTTGGTAGTTGAT
AGCTTCTGAGTACCAGTGTATGGAGGCCAGTGCAGGGGACCAATGTCCCACTGTCATTCC
AGAGCCTTCCACTCTTCTGTCTTTGCAACTGAAGAGTTTCTGCAGAGAGATGCACATCTC
AGCAGGGCTAGCACTGGGTCAAACTTTGCTAGCCATGACTACCTGTAGTGTCCCTTACTG
CCCCACTTACCCAGAGAGACCCTGCCCTCTTTCTCTCTCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Phactr1 (ENSMUSG00000054728)
Transcript ID ENSMUST00000066928
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 574 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information