MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Gcnt2 (ENSMUSG00000021360)

Cross Reference

CCDS	CCDS26469.1
EMBL	AC133496, AC159205, AY435150, ...show all
GO	GO:0006486, GO:0007179, GO:0008109, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005975, ...show all
MGI_trans_name	Gcnt2-201
protein_id	AAH54845.1, AAR95651.1
RefSeq_mRNA	NM_133219.1
RefSeq_peptide	NP_573482
UCSC	uc007qeo.1
UniParc	UPI000018666A

Uniprot/SPTREMBL

Q7TPQ8

Definition

protein_id:ENSMUSP00000066467
translation:

MSLRGKVFAVSALSVVIFVVFYHSQLSLPNLYQQLNSSSERTSVTICDYGLQNHTFFTTG
DTSPHPLERLSCPQYRIQSHYITSPLSEEEAAFPLAYIMVIHKDFDTFERLFRAIYMPQN
VYCVHVDSKATDTFKEAVRQLLSCFPNAFLASKVEQVVYGGFSRLQADLNCMKDLVASKV
PWKYVLNTCGQDFPLKTNKEIINHLKRFKGKNITPGVLPPAYIVVRTKYVHQERKGKDGY
FMHKTNILKTPPPHQLIIYFGTAYVALTRDFVNFILNDERAIALLEWSKDTYSPDEHFWV
TLNRIPGVPGSMPPNASWTGNLRAVKWMDMEAKHGGCHGHYVHGICIYGNGDLQWLINSQ
SLFANKFELNTYPLTVECLELRLRERTLNQSEIAIQPSWYF

Chromosome

Length
Position(start - end)

40,458
40,917,883 - 40,958,342

Orient to Chromosome

plus

Link

Location : (13:40917883-40958342)
/

Detail Map

name	Gcnt2 (ENSMUSG00000021360)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gcnt2 note : glucosaminyl (N-acetyl) transferase 2, I-branching enzyme [Source:MGI Symbol;Acc:MGI:1100870]

name	A730081D07Rik (ENSMUSG00000086693)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : A730081D07Rik note : RIKEN cDNA A730081D07 gene [Source:MGI Symbol;Acc:MGI:2441825]

name	Gcnt2 (ENSMUSG00000021360)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000110191

name	Gcnt2 (ENSMUSG00000021360)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000069958

name	Gcnt2 (ENSMUSG00000021360)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000067778

name	Gcnt2 (ENSMUSG00000021360) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36637.1 RefSeq_peptide:NP_076376 RefSeq_mRNA:NM_023887.4 Uniprot/SPTREMBL:Q6T5E4 UCSC:uc007qel.2 Fantom:F830016L15 EMBL:AC133496 EMBL:AC159205 EMBL:AK156328 EMBL:AY435148 EMBL:BC094572 GO:GO:0006486 GO:GO:0007179 GO:GO:0008109 GO:GO:0008375 GO:GO:0010608 GO:GO:0010718 GO:GO:0010812 GO:GO:0016020 GO:GO:0030335 GO:GO:0034116 GO:GO:0036438 GO:GO:0051897 GO:GO:0070374 MGI_trans_name:Gcnt2-203 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005975 goslim_goa:GO:0006464 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0016757 goslim_goa:GO:0042592 protein_id:AAH94572.1 protein_id:AAR95649.1 protein_id:BAE33677.1 UniParc:UPI00001E7D61
definition	note : transcript_id=ENSMUST00000110191 protein_id : ENSMUSP00000105820 translation : MGSWKYSLFSLSLIAALMLMFMYDRKLWKNYHFPRAVSNISVLAEVCLQMFSGESFYTADSARKTTLENFTCPEYKIQNHYITETLSEEEARFPLAFTLTIHKDYDTFERLFRAIYMPQNVYCVHVDSKATDTFKEEVRQLLSCFPNAFLASRMEPVVYGGFSRLQADLNCMKDLVASKIPWKYVLNTCGQDFPLKTNKEIVQYLKRFIGKNLTPGVLPPAHAVGRTKYVHQELLDHKNPYVHNTARLKAPPPHNLTIYFGTAYVALTREFANFVLKDQRSVDLISWSKDTYSPDEHFWVTLNRIPGVPGSMPPNASWTGNLRAVKWMDMEAKHGGCHGHYVHGICIYGNGDLQWLINSQSLFANKFELNTYPLTVECLELRLRERTLNQSEIAIQPSWYF

name	Gcnt2 (ENSMUSG00000021360) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26468.1 Uniprot/SWISSPROT:P97402 RefSeq_peptide:NP_032131 RefSeq_mRNA:NM_008105.3 UCSC:uc007qem.2 EMBL:AC133496 EMBL:AC159205 EMBL:AY435149 EMBL:U68182 GO:GO:0000139 GO:GO:0006486 GO:GO:0007179 GO:GO:0007179 GO:GO:0008109 GO:GO:0008109 GO:GO:0008284 GO:GO:0008375 GO:GO:0010608 GO:GO:0010608 GO:GO:0010718 GO:GO:0010718 GO:GO:0010812 GO:GO:0010812 GO:GO:0016021 GO:GO:0030335 GO:GO:0030335 GO:GO:0034116 GO:GO:0034116 GO:GO:0036438 GO:GO:0036438 GO:GO:0051897 GO:GO:0051897 GO:GO:0070374 GO:GO:0070374 MGI_trans_name:Gcnt2-202 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005794 goslim_goa:GO:0005975 goslim_goa:GO:0006464 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0016757 goslim_goa:GO:0042592 goslim_goa:GO:0043226 protein_id:AAB39621.1 protein_id:AAR95650.1 UniParc:UPI0000021BA8
definition	note : transcript_id=ENSMUST00000069958 protein_id : ENSMUSP00000070942 translation : MPPSVRYFFIVSVTTVIVFIVLYVLSFGGDQSYQKLNISDSVMLAQVCSSFIDGKSRFLWRNKLMIHEKPSCTEYVTQSHYITAPLSQEEVDFPLAYVMVIHHNFDTFARLFRAIFMPQNIYCVHVDEKATAEFKGAVEQLVSCFPNAFLASKMEPVVYGGISRLQADLNCIKDLSTSEVPWKYAINTCGQDFPLKTNKEIVQYLKGLKGKNLTPGVLPPAHAIGRTRYVHREHLSKELSYVIRTTALKPPPPHNLTIYFGSAYVALSREFANFVLRDPRAVDLLHWSKDTFSPDEHFWVTLNRIPGVPGSMPPNASWTGNLRAVKWMDMEAKHGGCHGHYVHGICIYGNGDLQWLINSQSLFANKFELNTYPLTVECLELRLRERTLNQSEIAIQPSWYF

name	Gcnt2 (ENSMUSG00000021360) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26469.1 RefSeq_peptide:NP_573482 RefSeq_mRNA:NM_133219.1 Uniprot/SPTREMBL:Q7TPQ8 UCSC:uc007qeo.1 EMBL:AC133496 EMBL:AC159205 EMBL:AY435150 EMBL:BC054845 GO:GO:0006486 GO:GO:0007179 GO:GO:0008109 GO:GO:0008375 GO:GO:0010608 GO:GO:0010718 GO:GO:0010812 GO:GO:0016020 GO:GO:0030335 GO:GO:0034116 GO:GO:0036438 GO:GO:0051897 GO:GO:0070374 MGI_trans_name:Gcnt2-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005975 goslim_goa:GO:0006464 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0016757 goslim_goa:GO:0042592 protein_id:AAH54845.1 protein_id:AAR95651.1 UniParc:UPI000018666A
definition	note : transcript_id=ENSMUST00000067778 protein_id : ENSMUSP00000066467 translation : MSLRGKVFAVSALSVVIFVVFYHSQLSLPNLYQQLNSSSERTSVTICDYGLQNHTFFTTGDTSPHPLERLSCPQYRIQSHYITSPLSEEEAAFPLAYIMVIHKDFDTFERLFRAIYMPQNVYCVHVDSKATDTFKEAVRQLLSCFPNAFLASKVEQVVYGGFSRLQADLNCMKDLVASKVPWKYVLNTCGQDFPLKTNKEIINHLKRFKGKNITPGVLPPAYIVVRTKYVHQERKGKDGYFMHKTNILKTPPPHQLIIYFGTAYVALTRDFVNFILNDERAIALLEWSKDTYSPDEHFWVTLNRIPGVPGSMPPNASWTGNLRAVKWMDMEAKHGGCHGHYVHGICIYGNGDLQWLINSQSLFANKFELNTYPLTVECLELRLRERTLNQSEIAIQPSWYF

name
type	misc_feature
link
xref
definition	note : contig AC159205.2 1..180255(-1)

name
type	misc_feature
link
xref
definition	note : contig AC133496.3 1..173149(-1)

name	A730081D07Rik (ENSMUSG00000086693)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000097773 Vega_transcript:OTTMUST00000097773 UCSC:uc007qep.1 Clone_based_vega_transcript:RP24-386G2.2-001 MGI_trans_name:A730081D07Rik-001 OTTT:OTTMUST00000097773
definition	note : processed_transcript note : transcript_id=ENSMUST00000153685

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Gcnt2 (ENSMUSG00000021360)
Transcript ID	ENSMUST00000067778

Reports
substitution
cSNPs	0
Insertion	34
Deletion	37
SNPs	-1kb 40912649(c.-5234G>A), 40912655(c.-5228T>G), 40912700(c.-5183G>A), 40912702(c.-5181A>G), 40912717(c.-5166G>A), 40912741(c.-5142A>T), 40912787(c.-5096A>G), 40912804(c.-5079C>T), 40912815(c.-5068G>A), 40913174(c.-4709A>G), 40913280(c.-4603T>C), 40913289(c.-4594A>G), 40913308(c.-4575C>T), 40913309(c.-4574A>G), 40913518(c.-4365T>C), 40913541(c.-4342T>C), 40913554(c.-4329T>C), 40913579(c.-4304G>C), 40913581(c.-4302C>T), 40913593(c.-4290C>G), 40913645(c.-4238A>G), 40913687(c.-4196T>G), 40913712(c.-4171A>C), 40913760(c.-4123G>A), 40913843(c.-4040G>T), 40913863(c.-4020C>T), 40913928(c.-3955C>T), 40913980(c.-3903G>C), 40914127(c.-3756G>A), 40914921(c.-2962G>A), 40915131(c.-2752C>G), 40915345(c.-2538A>G), 40915469(c.-2414A>G), 40915489(c.-2394T>C), 40916102(c.-1781G>A), 40916135(c.-1748T>C), 40916142(c.-1741A>G), 40916159(c.-1724C>T), 40916198(c.-1685A>C), 40916352(c.-1531C>T), 40916656(c.-1227G>A), 40916721(c.-1162T>C), 40916943(c.-940G>A), 40916988(c.-895T>G), 40917104(c.-779G>C), 40917206(c.-677C>A), 40917356(c.-527A>G), 40917443(c.-440G>A), 40917511(c.-372C>T), 40917516(c.-367T>C), 40917614(c.-269G>C), 5'UTR CDS 3'UTR 40958743(c.401G>A), 40958930(c.588C>T), 40958957(c.615G>A), 40959390(c.1048C>G), 40959586(c.1244C>T), 40959698(c.1356T>C), 40959934(c.1592G>A), 40960160(c.1818G>A), 40960314(c.1972T>C), 40960630(c.2288T>G), INTRON 40918826(c.919+25G>A), 40918842(c.919+41T>C), 40918917(c.919+116C>T), 40919000(c.919+199A>G), 40919082(c.919+281G>A), 40919084(c.919+283G>A), 40919089(c.919+288C>G), 40919119(c.919+318A>G), 40919124(c.919+323T>C), 40919561(c.919+760A>G), 40919566(c.919+765C>T), 40919573(c.919+772A>C), 40919595(c.919+794T>C), 40919596(c.919+795A>G), 40921069(c.919+2268G>A), 40921217(c.919+2416T>C), 40921220(c.919+2419C>G), 40921225(c.919+2424C>T), 40921419(c.919+2618A>C), 40921424(c.919+2623A>G), 40922082(c.919+3281C>T), 40922113(c.919+3312C>T), 40922726(c.919+3925C>T), 40922748(c.919+3947C>G), 40922865(c.919+4064G>A), 40922933(c.919+4132G>A), 40922976(c.919+4175T>C), 40923002(c.919+4201C>T), 40923103(c.919+4302A>T), 40923125(c.919+4324C>T), 40923300(c.919+4499A>G), 40923370(c.919+4569C>T), 40923400(c.919+4599G>A), 40923529(c.919+4728T>C), 40923650(c.919+4849G>C), 40923743(c.919+4942T>C), 40924201(c.919+5400C>T), 40924531(c.919+5730A>G), 40924566(c.919+5765G>A), 40924702(c.919+5901C>G), 40925407(c.919+6606T>C), 40925516(c.919+6715A>C), 40925564(c.919+6763C>T), 40925676(c.919+6875G>A), 40925710(c.919+6909A>C), 40925718(c.919+6917C>A), 40926034(c.919+7233C>T), 40926201(c.919+7400A>G), 40926605(c.919+7804T>C), 40926730(c.919+7929C>T), 40926760(c.919+7959G>A), 40926800(c.919+7999A>G), 40926841(c.919+8040C>A), 40927006(c.919+8205T>A), 40927029(c.919+8228G>A), 40927089(c.919+8288C>T), 40927301(c.919+8500T>C), 40927352(c.919+8551A>G), 40927370(c.919+8569A>G), 40927576(c.919+8775G>A), 40927604(c.919+8803C>T), 40927635(c.919+8834G>A), 40927681(c.919+8880T>G), 40928019(c.919+9218C>T), 40928097(c.919+9296G>C), 40928119(c.919+9318T>C), 40928260(c.919+9459T>G), 40928273(c.919+9472T>C), 40928355(c.919+9554T>C), 40928396(c.919+9595A>G), 40928429(c.919+9628A>G), 40928511(c.919+9710C>A), 40928526(c.919+9725A>G), 40928582(c.919+9781T>C), 40928584(c.919+9783C>T), 40928589(c.919+9788C>A), 40928629(c.919+9828G>A), 40928661(c.919+9860G>C), 40928667(c.919+9866T>C), 40928731(c.919+9930T>C), 40928735(c.919+9934T>C), 40928908(c.919+10107T>C), 40928913(c.919+10112C>G), 40928925(c.919+10124C>T), 40928986(c.919+10185C>T), 40928996(c.919+10195T>C), 40929027(c.919+10226C>T), 40929073(c.919+10272A>G), 40929100(c.919+10299T>C), 40929111(c.919+10310A>G), 40929149(c.919+10348A>G), 40929202(c.919+10401A>G), 40929257(c.919+10456C>T), 40929543(c.919+10742G>A), 40929945(c.919+11144C>T), 40929975(c.919+11174C>T), 40930012(c.919+11211T>C), 40930125(c.919+11324T>C), 40930201(c.919+11400G>T), 40930246(c.919+11445C>T), 40930473(c.919+11672T>C), 40930563(c.919+11762C>G), 40930746(c.919+11945T>C), 40930821(c.919+12020T>A), 40931314(c.919+12513A>G), 40931496(c.919+12695A>G), 40931645(c.919+12844C>T), 40932409(c.919+13608C>T), 40932540(c.919+13739G>C), 40932557(c.919+13756G>T), 40932582(c.919+13781G>A), 40932696(c.919+13895A>G), 40932791(c.919+13990C>T), 40932853(c.919+14052A>G), 40932972(c.919+14171G>A), 40933010(c.919+14209C>T), 40933085(c.919+14284T>C), 40933124(c.919+14323A>G), 40933313(c.919+14512T>C), 40933333(c.919+14532A>C), 40933336(c.919+14535T>C), 40933337(c.919+14536A>G), 40933378(c.919+14577T>C), 40933887(c.919+15086C>T), 40933996(c.919+15195A>G), 40933999(c.919+15198G>A), 40934423(c.919+15622C>T), 40934434(c.919+15633T>C), 40934514(c.919+15713C>T), 40934532(c.919+15731A>G), 40934575(c.919+15774C>A), 40934589(c.919+15788T>C), 40934747(c.919+15946C>T), 40935057(c.919+16256G>A), 40935152(c.919+16351G>T), 40935263(c.919+16462G>T), 40935283(c.919+16482A>T), 40935284(c.919+16483A>G), 40935291(c.919+16490A>G), 40935348(c.919+16547T>C), 40935389(c.919+16588C>T), 40935522(c.919+16721G>A), 40935596(c.919+16795G>A), 40935603(c.919+16802C>T), 40935667(c.919+16866A>T), 40935668(c.919+16867T>C), 40935695(c.919+16894T>C), 40935696(c.919+16895G>A), 40935732(c.919+16931A>C), 40935747(c.919+16946T>C), 40936119(c.919+17318A>G), 40936198(c.920-17378T>C), 40936596(c.920-16980T>G), 40936597(c.920-16979T>G), 40936627(c.920-16949C>T), 40936997(c.920-16579A>T), 40937142(c.920-16434T>C), 40937166(c.920-16410T>C), 40937189(c.920-16387T>C), 40937209(c.920-16367A>G), 40937264(c.920-16312G>A), 40937318(c.920-16258T>A), 40937389(c.920-16187T>C), 40937444(c.920-16132C>T), 40937477(c.920-16099C>T), 40937491(c.920-16085C>T), 40937609(c.920-15967G>A), 40937611(c.920-15965C>T), 40937696(c.920-15880T>C), 40937782(c.920-15794C>T), 40937783(c.920-15793C>G), 40937854(c.920-15722A>G), 40937949(c.920-15627C>T), 40937954(c.920-15622G>A), 40937991(c.920-15585G>A), 40938041(c.920-15535T>C), 40938284(c.920-15292G>C), 40938285(c.920-15291T>C), 40938316(c.920-15260T>C), 40938323(c.920-15253A>G), 40938352(c.920-15224G>C), 40938391(c.920-15185A>G), 40938392(c.920-15184A>G), 40938400(c.920-15176T>C), 40938428(c.920-15148T>C), 40938472(c.920-15104C>T), 40938561(c.920-15015T>G), 40938768(c.920-14808G>A), 40938775(c.920-14801C>G), 40938813(c.920-14763G>A), 40938830(c.920-14746G>A), 40938926(c.920-14650A>G), 40938950(c.920-14626T>C), 40938987(c.920-14589G>A), 40939006(c.920-14570T>C), 40939025(c.920-14551T>C), 40939077(c.920-14499T>A), 40939236(c.920-14340C>T), 40939239(c.920-14337A>T), 40939247(c.920-14329A>G), 40939249(c.920-14327G>A), 40939262(c.920-14314A>G), 40939432(c.920-14144A>T), 40939725(c.920-13851C>G), 40939760(c.920-13816A>C), 40939766(c.920-13810A>G), 40940060(c.920-13516C>T), 40940119(c.920-13457A>G), 40940163(c.920-13413C>T), 40940182(c.920-13394G>A), 40940282(c.920-13294A>C), 40940310(c.920-13266G>A), 40940346(c.920-13230C>T), 40940351(c.920-13225T>G), 40940403(c.920-13173G>A), 40940437(c.920-13139A>G), 40940551(c.920-13025G>T), 40940589(c.920-12987G>C), 40940965(c.920-12611C>G), 40940988(c.920-12588C>T), 40941096(c.920-12480C>T), 40941133(c.920-12443A>G), 40941369(c.920-12207A>G), 40941388(c.920-12188A>T), 40941628(c.920-11948T>C), 40941718(c.920-11858G>T), 40941990(c.920-11586C>T), 40942445(c.920-11131G>C), 40942576(c.920-11000T>A), 40942603(c.920-10973A>G), 40942698(c.920-10878G>T), 40943450(c.920-10126A>T), 40943498(c.920-10078C>A), 40943675(c.920-9901C>T), 40943775(c.920-9801C>T), 40944059(c.920-9517G>T), 40944126(c.920-9450C>T), 40944514(c.920-9062G>A), 40944573(c.920-9003G>A), 40944670(c.920-8906G>C), 40944782(c.920-8794T>C), 40944864(c.920-8712C>G), 40945017(c.920-8559T>A), 40945035(c.920-8541T>C), 40945148(c.920-8428T>G), 40945211(c.920-8365G>A), 40945214(c.920-8362T>A), 40945264(c.920-8312C>T), 40945326(c.920-8250A>T), 40945554(c.920-8022G>C), 40945731(c.920-7845A>G), 40945766(c.920-7810C>T), 40946163(c.920-7413G>A), 40946915(c.920-6661G>A), 40946946(c.920-6630G>C), 40946951(c.920-6625C>T), 40947543(c.920-6033A>G), 40947547(c.920-6029A>G), 40947784(c.920-5792T>C), 40947894(c.920-5682C>T), 40948143(c.920-5433G>T), 40948186(c.920-5390C>G), 40948315(c.920-5261G>A), 40948427(c.920-5149A>G), 40948909(c.920-4667C>T), 40949560(c.920-4016T>C), 40949667(c.920-3909A>G), 40949677(c.920-3899C>T), 40949735(c.920-3841C>T), 40949790(c.920-3786G>A), 40950261(c.920-3315G>A), 40950365(c.920-3211C>T), 40950628(c.920-2948G>A), 40950900(c.920-2676A>G), 40951023(c.920-2553C>T), 40951170(c.920-2406A>T), 40951974(c.920-1602C>G), 40952058(c.920-1518G>A), 40952221(c.920-1355C>T), 40952415(c.920-1161A>C), 40952459(c.920-1117C>T), 40952547(c.920-1029C>T), 40952682(c.920-894T>G), 40952740(c.920-836T>C), 40952773(c.920-803C>G), 40952785(c.920-791G>A), 40952812(c.920-764A>G), 40952849(c.920-727A>G), 40953013(c.920-563C>A), 40953108(c.920-468A>G), 40953137(c.920-439T>C), 40953140(c.920-436C>A), 40953341(c.920-235G>A), 40953391(c.920-185A>T), 40953444(c.920-132A>G), 40953450(c.920-126A>G), 40953476(c.920-100A>G), 40954379(c.1015+708T>C), 40954542(c.1015+871T>C), 40954554(c.1015+883T>G), 40954597(c.1015+926C>A), 40954606(c.1015+935C>T), 40954665(c.1015+994G>A), 40954805(c.1015+1134C>T), 40954825(c.1015+1154A>G), 40954928(c.1015+1257G>A), 40955054(c.1015+1383C>T), 40955161(c.1015+1490T>C), 40955162(c.1015+1491G>A), 40955292(c.1015+1621T>C), 40955307(c.1015+1636T>A), 40955308(c.1015+1637T>G), 40955328(c.1015+1657C>T), 40955376(c.1015+1705G>A), 40955437(c.1015+1766T>C), 40955439(c.1015+1768A>C), 40955759(c.1015+2088T>A), 40955765(c.1015+2094C>T), 40955766(c.1015+2095A>G), 40955816(c.1015+2145A>G), 40955859(c.1015+2188T>C), 40955930(c.1016-2222A>G), 40956129(c.1016-2023A>G), 40956324(c.1016-1828T>C), 40956344(c.1016-1808T>C), 40956381(c.1016-1771G>A), 40956518(c.1016-1634G>A), 40956601(c.1016-1551G>A), 40956611(c.1016-1541A>G), 40956613(c.1016-1539T>C), 40956630(c.1016-1522G>A), 40956635(c.1016-1517G>T), 40956751(c.1016-1401C>T), 40956784(c.1016-1368C>T), 40957256(c.1016-896T>G), 40957410(c.1016-742C>T), 40957444(c.1016-708C>T), 40957460(c.1016-692A>C), 40957521(c.1016-631C>T), 40957624(c.1016-528G>A), 40957697(c.1016-455G>T), 40957852(c.1016-300C>T), 40957917(c.1016-235A>G), +1kb 40960918(c.2576C>A), 40960977(c.2635C>T), 40960978(c.2636A>G), 40961174(c.2832G>T), 40965276(c.6934G>A), 40965312(c.6970G>A), 40965327(c.6985G>A), 40965397(c.7055G>T), 40965444(c.7102A>T), 40965538(c.7196A>G), 40965737(c.*7395C>G),
Insertions	-1kb 40913044 (c.-4839_-4838insGCCC), 40913164 (c.-4719_-4718insTGTA), 40914234 (c.-3652_-3649dupAAAA), 40914837 (c.-3046_-3045insC), 40915958 (c.-1928_-1925dupAGAG), 40917110 (c.-773_-772insAA), 5'UTR CDS 3'UTR 40960202 (c.1854_1860dupAGGTGAG), 40960328 (c.1985_1988dupCCCC), 40960417 (c.2079_2081dupAAA), INTRON 40922025 (c.919+3228_919+3232dupTCCCC), 40923278 (c.919+4482_919+4483dupCT), 40926495 (c.919+7694_919+7696dupTTT), 40928866 (c.919+10065dupT), 40931944 (c.919+13146_919+13147insTCCT), 40932631 (c.919+13832dupG), 40933172 (c.919+14371_919+14372insATTTT), 40934773 (c.919+15973dupA), 40935173 (c.919+16373dupA), 40936493 (c.920-17079_920-17077dupAAG), 40937312 (c.920-16262_920-16260dupTGT), 40937680 (c.920-15895_920-15892dupTATG), 40941350 (c.920-12229_920-12226dupTTTT), 40942189 (c.920-11387dupA), 40942304 (c.920-11272_920-11271insGG), 40942477 (c.920-11094_920-11093insAGTGGTGTG), 40942824 (c.920-10745dupT), 40945567 (c.920-8008_920-8007insTGGGG), 40952364 (c.920-1207dupC), 40953133 (c.920-443dupA), 40953137 (c.920-439_920-438insAA), 40953281 (c.920-295_920-294insT), 40954574 (c.1015+904_1015+905insGC), 40955593 (c.1015+1922_1015+1923insTTA), 40955611 (c.1015+1940_1015+1941insA), +1kb
Deletions	-1kb 40914631 (c.-3251_-3249delTAT), 40916060 (c.-1822delG), 40917225 (c.-657_-656delGC), 5'UTR CDS 3'UTR 40960266 (c.1925_1926delAG), INTRON 40919280 (c.919+492_919+493delAA), 40919576 (c.919+784_919+785delGG), 40921158 (c.919+2359_919+2360delAT), 40922668 (c.919+3870delG), 40926399 (c.919+7599delA), 40926554 (c.919+7754_919+7758delACAAC), 40927992 (c.919+9192delT), 40928011 (c.919+9211_919+9214delAGAG), 40928866 (c.919+10066_919+10070delGTTTT), 40928880 (c.919+10087_919+10091delGTTTT), 40930318 (c.919+11540_919+11542delGTT), 40933692 (c.919+14901delA), 40934089 (c.919+15290delC), 40936615 (c.920-16960_920-16959delTT), 40938626 (c.920-14949_920-14948delCA), 40939036 (c.920-14539_920-14536delACAG), 40939092 (c.920-14483_920-14482delTT), 40941230 (c.920-12345_920-12340delATCTAA), 40941452 (c.920-12123_920-12122delAA), 40941596 (c.920-11977delC), 40943696 (c.920-9875delA), 40944087 (c.920-9486_920-9484delCGA), 40946117 (c.920-7457delG), 40946550 (c.920-7022_920-7015delTTTGGTTG), 40947126 (c.920-6447delT), 40948570 (c.920-5003_920-4992delGGGGGAGGGACG), 40948793 (c.920-4767_920-4760delAACACACA), 40949045 (c.920-4514_920-4513delTG), 40951249 (c.920-2306_920-2303delGTTT), 40956976 (c.1016-1172delT), +1kb 40961107 (c.2766delT), 40965351 (c.7010_7013delAGAG), 40965516 (c.7175delG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000067778)	MSLRGKVFAVSALSVVIFVVFYHSQLSLPNLYQQLNSSSERTSVTICDYGLQNHTFFTTG DTSPHPLERLSCPQYRIQSHYITSPLSEEEAAFPLAYIMVIHKDFDTFERLFRAIYMPQN VYCVHVDSKATDTFKEAVRQLLSCFPNAFLASKVEQVVYGGFSRLQADLNCMKDLVASKV PWKYVLNTCGQDFPLKTNKEIINHLKRFKGKNITPGVLPPAYIVVRTKYVHQERKGKDGY FMHKTNILKTPPPHQLIIYFGTAYVALTRDFVNFILNDERAIALLEWSKDTYSPDEHFWV TLNRIPGVPGSMPPNASWTGNLRAVKWMDMEAKHGGCHGHYVHGICIYGNGDLQWLINSQ SLFANKFELNTYPLTVECLELRLRERTLNQSEIAIQPSWYF*
MSMv4 transcript	MSLRGKVFAVSALSVVIFVVFYHSQLSLPNLYQQLNSSSERTSVTICDYGLQNHTFFTTG DTSPHPLERLSCPQYRIQSHYITSPLSEEEAAFPLAYIMVIHKDFDTFERLFRAIYMPQN VYCVHVDSKATDTFKEAVRQLLSCFPNAFLASKVEQVVYGGFSRLQADLNCMKDLVASKV PWKYVLNTCGQDFPLKTNKEIINHLKRFKGKNITPGVLPPAYIVVRTKYVHQERKGKDGY FMHKTNILKTPPPHQLIIYFGTAYVALTRDFVNFILNDERAIALLEWSKDTYSPDEHFWV TLNRIPGVPGSMPPNASWTGNLRAVKWMDMEAKHGGCHGHYVHGICIYGNGDLQWLINSQ SLFANKFELNTYPLTVECLELRLRERTLNQSEIAIQPSWYF*
homology	100.00 (402 / 402)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Gcnt2 (ENSMUSG00000021360)
Transcript ID	ENSMUST00000067778

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........ACCTAGTCATGGGGCCAGCCTTAGTTACCCCCACCCCCACCCCAAAGCCC TCCGCATTCTCTGTGAGCTGTTTGGCCACCGGGTGCACAGGTAAGCTAAGAGAATTCCAA GCCTTGTAACCAGACCTGCTCTTCCTGGTTTCCCTGAGTCACAATGACTGATACTTCCAG GAATTTTACAACGGTCCAGAAACATTTGTTCTTTCTTCAGAGTCCCGGAAGTGGGAGAGT TGGGTGTGTGGGAAGGGGACTAGAAGATTCCAGAAGTTTTAGAAAATGACCACAAATTTG ATGGCATCTTAATGTTAAAAGAGACTCAGTAGCTAGGTGCTCAAATATTGCAAATAATAC TGTGGGGACAGTTCTAGACATCTGAAGCTCTGTGTGAAACGGAAACCAGTGGTTATCACA TTTCGACATAGCATGCTAACAATGGTGTGTTTACTCTCTTACGTGTTCTCAGCTCGGACC GTCTAGTATGAGAAATCACCTTCGCCAGGTGTCCCACGATTTGATTCTTAGTTCCCTCTT CTCATAGTCTGAGTAGGCACATCATATCTGAATGATTTAATCAAGCACACTTCACCACAA AGGCCCCCCCCCCCTTCTGCTGATTATCTATTTAGACGTGTTGCAATGCCCTTTTCCCTG TATCTATGTCTCTGCCCAGGGGCGGAGATAACACTGAAATGAAAAAATAAACAATGAGAA AGAAAGAAGAGGGACACCGAGGAGCTTTCGCCTTATACTCTCCCCAAAGCGGGGGCAAAA AACAGACCCACCTCTTGTAGGAGATGAGGGGTGTACGCAAGAGAAAAGAGCAGTTTAGAT GGACTGAGGGGAGGTGGGTGGGGCTGACGCTTGAGACTGTCCGCTCCTGGTCCGGTCGCT CCGTTCCAGAAGGCAGCCTGCTGGAGGCACCTCTAGCTTTTCGTATGCAAATGAAGAGGT TTCCCCCATCTGGGCGGGGCTGAGCTCCTGCCCGCAGGGATTCGCCTCCT
1	EXON 1	40,917,634	40,918,801	-	1	1,168	AGGAGATTCAAGCTTCAGATGCGAAGTGCGGTGGGAAAGCTGCTAAACTCCAGCCAGTCC CGGAGGATGGGCCAGACTCCCACGCACTGGAGACCCACGCCTTGAGAGCTGGGGAGCGTG AGCCCGCATCTGTGCGGGAGAAGCCGGCGAATCTGGAGGAGCCAGATCCACCTCTAGCGC CTGGGCTTTCAGAACTGTGGTCACTTCTCAGTCTCCAGTGATAATTCTTCCCGCCTGGAA CCCTAAATAATGAGCCTACGCGGGAAAGTTTTCGCTGTCTCTGCGCTCAGCGTGGTGATT TTTGTGGTTTTTTATCACAGCCAGCTAAGCCTGCCCAACCTCTACCAGCAGCTCAACAGC TCCAGCGAAAGGACGTCTGTCACCATCTGTGATTACGGCTTGCAAAATCATACGTTCTTC ACGACGGGGGACACATCACCACATCCTTTAGAAAGACTCTCCTGTCCTCAATACCGGATC CAGAGCCACTATATTACCAGTCCCCTTTCGGAAGAAGAGGCTGCCTTTCCCCTGGCTTAC ATCATGGTGATCCACAAAGACTTCGATACCTTTGAAAGGCTCTTCAGGGCCATTTACATG CCCCAGAACGTCTACTGTGTGCATGTGGATAGTAAGGCGACAGACACCTTCAAAGAAGCG GTGCGGCAGTTACTAAGCTGTTTCCCCAATGCCTTCCTGGCCTCTAAGGTGGAGCAGGTG GTCTATGGTGGCTTCTCTCGGCTCCAGGCTGATCTGAACTGCATGAAAGATCTGGTGGCC TCCAAGGTCCCCTGGAAATATGTCCTCAACACCTGCGGGCAGGACTTCCCTTTGAAAACC AACAAGGAAATAATTAACCATCTGAAAAGATTTAAGGGGAAAAACATCACTCCGGGAGTG CTGCCCCCTGCGTACATAGTTGTACGGACTAAATATGTACACCAGGAACGCAAAGGCAAA GACGGATATTTTATGCATAAAACAAATATTTTGAAGACTCCACCTCCACACCAACTGATC ATCTACTTCGGCACAGCCTACGTGGCCCTCACCCGGGACTTTGTCAACTTTATCCTGAAT GACGAAAGGGCCATTGCTCTCTTAGAGTGGTCTAAAGATACCTATAGCCCTGATGAACAT TTTTGGGTGACACTCAATAGGATTCCAG
	INTRON 1 - 2	40,918,802	40,953,575			34,774	GTCAGTGTCAAATAGTCGTTGACAA..........TAGTGCAATGTCGTCATCGTTACAG
2	EXON 2	40,953,576	40,953,671	1	1	96	GAGTCCCTGGCTCCATGCCACCAAACGCATCCTGGACGGGTAACCTCAGAGCTGTGAAGT GGATGGACATGGAAGCGAAGCATGGAGGCTGCCATG
	INTRON 2 - 3	40,953,672	40,958,151			4,480	GTAAGGTCTCCCGCTCTGGGGCCAC..........TGTGCCTCTGCTCTTTCCCCCACAG
3	EXON 3	40,958,152	40,960,891	1	-	2,740	GTCACTACGTCCATGGCATTTGTATCTATGGAAACGGAGACTTGCAGTGGCTGATTAATT CGCAAAGCCTGTTTGCTAACAAATTTGAACTCAACACATACCCTCTTACCGTGGAATGCC TGGAACTGAGGCTTCGAGAAAGAACACTCAACCAGAGTGAGATCGCCATACAGCCGAGCT GGTATTTCTGACCCGCAGCAGCTCGGGCCTAAATGGAAATTGAAGACGTAAAGAAGAGCT TTCTTTTCCAAGAGACTCTGGTCTTGGCTATGCTGAAGACTTTTTTAAAAAATGGTTTTC AGGGAACCGTGAGGATCTGGCAACATGGCTCTGCTTGCAATATCCACTGAGCACTGTAAT ACATTTGACAGGATGGCTGCATGAAACTGTCCAGCATTTTTCTGTCGTTTCCCCCCCACC CCAAATCCTTTTTTTCTCTTCTTTTTTAAAAGATAGGTAGGGTCTTGCTAGATATCTCTA GCAAGCCTGTTTCTTGTCAGGTAGCCCAGGATGGCCTTGAACTCTTAATCCTCCGCCTTG GCCCTCTAAGGGCTGCTAGTCCGAGTGTGGACAACCACACCTGGCTCTGGCATCTGGCGG TCACTTGACGCTCATCTGCGTCTCCGTCTGCTAGGTGGTCGGTGATAAATTCAAATGTAT CAGATCTCTGTGCCAGATACTCATATTAGTATACCCTGTTCAAAGGAGAATGGTGGATAA TACTGTCTGAGGAAATCAGAACTTATTTGAGAAGGAAGCTCTCGTTCCACATTCCTAGTA ACTATATTCTCAGGCACACATAGGCACACAGAGACAGCTTCCTAGTAACTCACATCAATT TCGTTTAATACAAACTGATCCTGAAGAGCTGAGGAACTATGTAAGTTCAGTGTCCAAGCA TTTGACTGACATTTGTGCAGAGTTAGGTTCCATCTCCAGCATCACGCACGGGTCTTGTGA ACACCGACATCTTCAGTTTACTTGTGTCTGCAGTTCTGTGGACAGAACAAAGCCATTCAC AAGTGACCGACAGCACGTGCCGTGAGACGGGAGGTGGCTGCAGGAAGAGGATGCCTCAGG GATGCCGGACATTTCCGTGTTCTATTCCAGAGTGTTCTCTTCTCCCAGAGAACACTGGAA CGTCCTCACAGGGATGAAGGAATTCTTTCTTTCCCACAGGAAAGGTGCTACTGTGTGGGT CTGGAACCTGTGAATGAATCACTCCTGGGGTTTCGTTTGTATGTGAGAGACGGGGACCCG GTTCTGTTGTGTGCAGCTTTAGCGGCATCAGGACAGCTTCCAGCTTGCAATGATTGCTGC TGACAGGAACACCTGGATCTCAAGAGCTTTTTATGACAGGTGGACATCTGTGTCATTTTT CCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATTCATTC GTCAGCCTACATTCAACAAACGCCTCTTGAATGTCTATGATTCCCCCAGACACATGCTGA CAGACACGAGGGAAGCAAGACAGATTCTTTCTCCACTGTTAAACTCCGGGGAGTGGTATC AGCTTTTGAAACCCTGCTCTAGACTCTTACAAAATGGCTACACTTAGCACATACTCTGCC CTGGCTATATATTATATTGGGCCATAGAGATCAGCAATGTATCAATTAATAGATTAATCC AGAGACAGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT GTCTCCTTTTATTGAAGAGTCCGCACACATACTCACCCCTCTAGTGGGCCACATGAGGAC CTGCATCTTGCAGATGATGTAGCAAGCCTTAGGATGGTTCATGATCAGTAGGAAGCAAAT TCTAAGACCTCAGGGTGTCTTTCTGAGTCTCTCATTTCTTTAGGGATGTGGAGAGAAGAT GAAGTATAGCCGTGTGTAGTGTCGCCAGAGAAGGTGGAGTTTAAGAATGGTCTCAGTGTT ATTAATGAGAAAAAGTTCTGTCATTCAGAAAAAAAAAGCAAAAAACGTGAGGTTGGGACT CAGTAGGTGAGGGTGCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCAC GGGACAGAGGGAGAGAGTCCACTACTGAAAGGAACGCTCAAACCTCCTCACACAGGTCCT TGCGCCTGGGCACTCCCCCGCCCCATATGCATACACACATACATGCTTTTGTGATTTTTT TTATTAGTGCTTTTACATTTAGAAATATTTATTTATTCTAGCAGGGAAAAAACCCCACAT GCTTTAAATGATGTCACTTTCCACAACTTCATTCTTGTGCTGTCATTGGACTGAATGTTA TGCATCTTTAAAGGGAATCACTTCGTGTAAAACTCTCTTGTCTCTTCTGCTGAAAAGTAA AATGGGTTGTGTCGGGTAATAAAGGGTCGAGGGGTAGGAAGCACTTGGTCAAGGCGAAGT CTAAAACCGGTCTCTTTTGTATTTGTTACTTGGATGAGAGCACCTGAAGACTAATGTTTT ACACTGGATTGAGATCTCATGGAAAATGAAACATTCTTTTTCTGGAGAAGTTTACATGCC CATTGTTGGTCACCTCTTTACTGTAAATACTATTGAAAAAAGGAGCGTAGCATTTGCATA GCAGGGATTGTGCCTGTATCTACTGTGTCCATTTTGTTTTTTCGGATGTTTTCTGGTTTT GTTTCCTTGGAAATAAATTAATATATTGTTTTCCACCTTC
	3' upstream sequence						AGGAATAGTGGATATTTATTTGATACATGGTTAATATGCACTGGGTCCCCCAGCTTTTGA AAAGGACAAAAGAAACACATTTATATGTGTATAGCTGTCTTAAAATTATCTCTCCACTAA AAAACATAATTGACCTTTCCATTTGTGGACTAAGGGACACTTTGCACTGCACTTGGGCCA TCTTCAGGTGAACACAGAGACTGGCTGGGCATTGGGTTTGCTTTCATCATTTTAGTTTCT AGTCTTGGTAAAATTCCAGTCAGCCACAGACTTCTTGCAGCATAGCTGGCCCTAGAGCTT GGGCAGGGAAGACCCAAAATGAGACTGGAACGTACTGTTATAATGTGTGGTACAAGAATC CCAAAAGGGTGACAATCGTGTCACAGGTTCAGGGGTTGCCTTGAACTCTCCTACTGCATC AGAAATAGGACAATAATAAATTGTGGCCCAATAACTAAAATAAGAATCCAAGCATGCACA ATACATGCATATACATATATGTAAATGCATGTATAAAATATACACATTATTAAAATGTAT AAGAGGCAAGAATTAGCTTGAAGGGAGTTCCTGCTCTTGGGTCCAGTGATCACCCAACAA ATCTATCATGATTCTCTCACCCAGGGCTGAGCACACTGATTCTGTGATGGGTGAGAGAGT AAATATCTGGGGCTTTGTCAGTCACATGGTTTCTGTCGCGATTATTCACTTCTGCTGTGA ATACATAGATGATATATAAGCATGGGCTGTGTGTTCTTTGCCGTGGTTGCAGACTATAAG TTCCTGATCTACCCAATCCCTCTCTAATGCATGTCAGACCCAAAGAAGGCAAAGGACCAT CCTCTTGGATGTGGATTACCTCCTGATGGGAACACTTGAGTGCCCAACACCTCCCCCACC CCAGTCCCCAGCCAGGAGGGGAGAGTGAGAAACGAGCACACAGAAGGAAGACCGGTGGCA TTTCTACTTTGGCTAAGTCTCTGTCTAAGGCACGAGTAAA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Gcnt2 (ENSMUSG00000021360)
Transcript ID	ENSMUST00000067778

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 402 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information