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Target CDS Information

Gene Symbol (Gene ID) Xkr4 (ENSMUSG00000051951)
Cross Reference
CCDS CCDS14803.1
EMBL AY534250
GO GO:0003674, GO:0005575, GO:0008150, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name Xkr4-001
OTTP OTTMUSP00000032437
OTTT OTTMUST00000065166
protein_id AAT07099.1
RefSeq_mRNA NM_001011874.1
RefSeq_mRNA_predicted XM_006495550
RefSeq_peptide NP_001011874
RefSeq_peptide_predicted XP_006495613.1
UCSC uc007aeu.1
UniParc UPI00004C728B
Uniprot/SWISSPROT Q5GH67
Vega_transcript OTTMUST00000065166, Xkr4-001
Vega_translation 178595, OTTMUSP00000032437
Definition protein_id:ENSMUSP00000070648
translation:
MAAKSDGRLKMKKSSDVAFTPLQNSDNSGSVQGLAPGLPSGSGAEDTEAAGGGCCPDGGG
CSRCCCCCAGSGGSAGSGGSGGGGRGSGAGSAALCLRLGREQRRYSLWDCLWILAAVAVY
FADVGTDIWLAVDYYLRGQRWWFGLTLFFVVLGSLSVQVFSFRWFVHDFSTEDSSTTTTS
SCQQPGADCKTVVSSGSAAGEGEVRPSTPQRQASNASKSNIAATNSGSNSNGATRTSGKH
RSASCSFCIWLLQSLIHILQLGQIWRYLHTIYLGIRSRQSGESGRWRFYWKMVYEYADVS
MLHLLATFLESAPQLVLQLCIIVQTHSLQALQGFTAAASLVSLAWALASYQKALRDSRDD
KKPISYMAVIIQFCWHFFTIAARVITFALFASVFQLYFGIFIVLHWCIMTFWIVHCETEF
CITKWEEIVFDMVVGIIYIFSWFNVKEGRTRCRLFIYYFVILLENTALSALWYLYKAPQI
ADAFAIPALCVVFSSFLTGVVFMLMYYAFFHPNGPRFGQSPSCACDDPATAFSLPPEVAT
STLRSISNNRSVASDRDQKFAERDGCVPVFQVRPTAPPTPSSRPPRIEESVIKIDLFRNR
YPAWERHVLDRSLRKAILAFECSPSPPRLQYKDDALIQERLEYETTL

Chromosome 1
Length
Position(start - end)
455,325
3,216,022 - 3,671,348
Orient to Chromosome minus
Link Location : (1:3216022-3671348)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Xkr4 (ENSMUSG00000051951)
Transcript ID ENSMUST00000070533
Reports
substitution
cSNPs3
Insertion171
Deletion215
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 3216424 (p.Gly514Gly), 3216436 (p.Phe510Phe), 3216853 (p.Ile371Ile),
non-synonymous substitutions
B6 transcript
(ENSMUST00000070533)
MAAKSDGRLKMKKSSDVAFTPLQNSDNSGSVQGLAPGLPSGSGAEDTEAAGGGCCPDGGG
CSRCCCCCAGSGGSAGSGGSGGGGRGSGAGSAALCLRLGREQRRYSLWDCLWILAAVAVY
FADVGTDIWLAVDYYLRGQRWWFGLTLFFVVLGSLSVQVFSFRWFVHDFSTEDSSTTTTS
SCQQPGADCKTVVSSGSAAGEGEVRPSTPQRQASNASKSNIAATNSGSNSNGATRTSGKH
RSASCSFCIWLLQSLIHILQLGQIWRYLHTIYLGIRSRQSGESGRWRFYWKMVYEYADVS
MLHLLATFLESAPQLVLQLCIIVQTHSLQALQGFTAAASLVSLAWALASYQKALRDSRDD
KKPISYMAVIIQFCWHFFTIAARVITFALFASVFQLYFGIFIVLHWCIMTFWIVHCETEF
CITKWEEIVFDMVVGIIYIFSWFNVKEGRTRCRLFIYYFVILLENTALSALWYLYKAPQI
ADAFAIPALCVVFSSFLTGVVFMLMYYAFFHPNGPRFGQSPSCACDDPATAFSLPPEVAT
STLRSISNNRSVASDRDQKFAERDGCVPVFQVRPTAPPTPSSRPPRIEESVIKIDLFRNR
YPAWERHVLDRSLRKAILAFECSPSPPRLQYKDDALIQERLEYETTL*
MSMv4 transcript
MAAKSDGRLKMKKSSDVAFTPLQNSDNSGSVQGLAPGLPSGSGAEDTEAAGGGCCPDGGG
CSRCCCCCAGSGGSAGSGGSGGGGRGSGAGSAALCLRLGREQRRYSLWDCLWILAAVAVY
FADVGTDIWLAVDYYLRGQRWWFGLTLFFVVLGSLSVQVFSFRWFVHDFSTEDSSTTTTS
SCQQPGADCKTVVSSGSAAGEGEVRPSTPQRQASNASKSNIAATNSGSNSNGATRTSGKH
RSASCSFCIWLLQSLIHILQLGQIWRYLHTIYLGIRSRQSGESGRWRFYWKMVYEYADVS
MLHLLATFLESAPQLVLQLCIIVQTHSLQALQGFTAAASLVSLAWALASYQKALRDSRDD
KKPISYMAVIIQFCWHFFTIAARVITFALFASVFQLYFGIFIVLHWCIMTFWIVHCETEF
CITKWEEIVFDMVVGIIYIFSWFNVKEGRTRCRLFIYYFVILLENTALSALWYLYKAPQI
ADAFAIPALCVVFSSFLTGVVFMLMYYAFFHPNGPRFGQSPSCACDDPATAFSLPPEVAT
STLRSISNNRSVASDRDQKFAERDGCVPVFQVRPTAPPTPSSRPPRIEESVIKIDLFRNR
YPAWERHVLDRSLRKAILAFECSPSPPRLQYKDDALIQERLEYETTL*
homology100.00 (648 / 648)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Xkr4 (ENSMUSG00000051951)
Transcript ID ENSMUST00000070533
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CCACCATGGTGTCTGCCTAGTGCTGCTGCCTCAGGCTCGTTAAACTCGCA
GGGGGACAGGGCTTCATGCACCCACCTCCTGAGATAGGGCCTTTGCATTTCTCTAGGCTG
GGGTTTGGCAGTACAGCATCCCTGGGGCTGCTCTCTTCTTATCCCGAGGGCTCGCCCTCT
GCTGCCAGCTTTGCTTTAGGTGTTCTAGCCCTGCAAGTACTGTGCCACCCAGGATCTCCG
AAGCATGGCACGCCCACCACCGCCGCCAGTATAGGAGCCCTAGCTTCCTAGTTAAAGCGT
GTTCACCCTCGCCAGCAACACACCTAGCACCATACCACACCCAGCCAGGTGCCGAGCGCG
CCCGGTACAATACAAAGAGACCATTTCTTCCGCAGCCTTCGCTGCTGCCACGCCCGCTTG
TGTCCGTGGCCCCCTACCCTCGGCAGTGACCCAACACCAAGGCTCTAACACGCGGCGCGC
TCTGCCCATCCCATCCCCCCAGCTTCGAGGAAATCCACTCAACGCTCTTCGCTATCCCAC
GAGCCTGGACTGGGCCTCCGATTGCCGTGCTGTTGCCCTCCGCGTCCAGCACTGGCCAGC
CAGGCACCCCCACCCGCCGCTCCCCTCAATCCCAGCCCCTCCTCCGGGCCCTCCTTCTCG
CCCCTCCCCAGCCGGGGTGGGAGCGGCGGCAGCTGGAAGGGAAGGGATGAGGTCATCCTC
TCCCTCGGAGTCAGCTGGTGGAGGAGAGGCTGCGGGAGGAGGGAGCGCGCGCGAGGGGAG
GAGAGGAATGTGCAGGTCCGAGGAGCTCCGCGGCGGCCGCTGCTGCTCCTGCTGCTGGCG
GCGGCGGCGGCTCGTGCTGCAGCCGCGGGGCCGGGCCGGCGCGGAGCGCGGGCGGCTGTC
AGGGGCGCGCGCGGGCCGGCGCGAGCAGCTGGGCTCGGCGCAGGCAGCCAGGCGGCGCTC
CTGCGGGTCCCGAGCGTGCGGCTAGCCGGGCCCAGCGCCCAGCCCCGCGG
1 EXON 1 3,670,552 3,671,498 - 2 947
GCGGCGGCGGGCGAGCGGGCGCTGGAGTAGGAGCTGGGGAGCGGCGCGGCCGGGGAAGGA
AGCCAGGGCGAGGCGAGGAGGTGGCGGGAGGAGGAGACAGCAGGGACAGGTGTCAGATAA
AGGAGTGCTCTCCTCCGCTGCCGAGGCATCATGGCCGCTAAGTCAGACGGGAGGCTGAAG
ATGAAGAAGAGCAGCGACGTGGCGTTCACCCCGCTGCAGAACTCGGACAATTCGGGCTCT
GTGCAAGGACTGGCTCCAGGCTTGCCGTCGGGGTCCGGAGCCGAGGACACGGAGGCGGCC
GGAGGCGGCTGCTGCCCGGACGGCGGTGGCTGCTCGCGCTGCTGCTGCTGCTGCGCGGGG
AGCGGCGGCTCGGCGGGCTCGGGCGGCTCGGGCGGCGGCGGCCGGGGCAGCGGGGCGGGC
TCTGCGGCGCTGTGCCTGCGCCTGGGCAGGGAGCAGCGGCGTTACTCGCTGTGGGACTGC
CTCTGGATCCTGGCCGCCGTGGCCGTGTACTTCGCGGATGTGGGAACGGACATCTGGCTC
GCGGTGGACTACTACCTGCGTGGCCAGCGCTGGTGGTTTGGGCTCACCCTCTTCTTCGTG
GTGCTGGGCTCCCTTTCTGTGCAAGTGTTCAGCTTCCGCTGGTTTGTGCATGATTTCAGC
ACCGAGGACAGCTCCACGACCACCACCTCCAGCTGCCAGCAGCCTGGAGCAGATTGCAAG
ACGGTGGTCAGCAGTGGGTCTGCAGCCGGGGAAGGCGAGGTTCGTCCTTCCACGCCGCAG
AGGCAAGCATCCAACGCCAGCAAGAGCAACATCGCCGCCACCAACAGCGGCAGCAACAGC
AACGGGGCCACCCGGACCAGCGGCAAACACAGGTCTGCGTCCTGCTCCTTTTGCATCTGG
CTCCTGCAGTCACTCATCCACATCTTGCAGCTTGGGCAAATCTGGAG
INTRON 1 - 2 3,421,902 3,670,551 248,650
GTACTGTATCAGGGTGGGGGTTGAG..........ATCTTGTGTCTGTGTCTTCTTTCAG
2 EXON 2 3,421,702 3,421,901 2 1 200
GTATTTGCACACAATATACTTAGGTATCCGGAGCCGGCAGAGTGGGGAGAGCGGCAGGTG
GCGGTTTTACTGGAAGATGGTGTACGAGTATGCAGATGTGAGCATGCTGCATCTGCTAGC
CACTTTTCTGGAAAGTGCTCCACAATTGGTCCTGCAGCTCTGCATTATTGTACAGACTCA
CAGCTTACAGGCCCTCCAAG
INTRON 2 - 3 3,216,969 3,421,701 204,733
GTAAGGATTTGCTATTTGGTTTCTG..........AATGTCTTCCTGTTTGCCTTTGTAG
3 EXON 3 3,214,482 3,216,968 1 - 2,487
GTTTCACAGCAGCAGCCTCCCTTGTGTCCTTGGCTTGGGCCCTAGCCTCCTACCAGAAGG
CTCTTCGGGACTCCCGAGATGACAAAAAGCCCATCAGCTACATGGCTGTCATCATCCAGT
TCTGCTGGCATTTCTTCACCATCGCTGCCAGGGTCATCACATTCGCCCTCTTTGCCTCGG
TTTTCCAGCTGTATTTTGGGATATTTATTGTCCTCCATTGGTGCATCATGACTTTCTGGA
TTGTCCACTGTGAGACAGAATTCTGTATCACCAAATGGGAAGAGATTGTGTTTGACATGG
TGGTGGGCATCATCTACATCTTCAGTTGGTTCAATGTCAAGGAAGGCAGGACACGCTGCA
GGCTGTTCATTTACTATTTTGTAATCCTTTTGGAAAATACAGCCTTGAGTGCACTCTGGT
ACCTCTACAAAGCTCCCCAGATTGCAGATGCATTTGCCATCCCTGCATTGTGCGTGGTTT
TCAGCAGCTTTTTAACAGGTGTTGTTTTTATGCTGATGTACTATGCCTTCTTCCATCCCA
ATGGCCCCAGATTTGGGCAATCACCAAGTTGTGCTTGTGATGATCCAGCCACTGCCTTCT
CTCTGCCTCCAGAAGTAGCCACAAGCACACTACGGTCCATCTCCAACAACCGCAGTGTTG
CCAGTGACCGTGATCAGAAATTTGCAGAGCGGGATGGATGTGTACCTGTGTTTCAAGTGA
GACCAACTGCACCACCCACCCCATCATCTCGACCACCACGGATTGAAGAATCAGTCATTA
AAATTGACCTGTTCAGGAATAGATATCCAGCATGGGAGAGACATGTGTTAGATCGAAGCC
TGAGAAAGGCCATTTTAGCCTTTGAATGTTCCCCATCTCCTCCAAGGCTGCAGTACAAGG
ATGATGCCCTTATTCAGGAGAGGCTGGAATATGAAACCACTTTATAAAACACAAGGAGCC
GCAATGTCCACATGAAGGGGTAACAGCAGGGCTGTGGCAATAATGACACCTTATCCAAGA
GTAGGGCAGCGAGCTGTATGTTCTTAGTTGTGGTATGGTTTGATCTTCCATCAGCTGACT
GCCTGCTGCTGGTGTCTATTCAAGCCAGCAGTGCTGAGAGTCTCTTATACTGTCAGCTTA
ATATGACTGTTGCTACAAACTCCTCCAGCAGAGATTTGGGGCACATTCACTGGAGGATAA
CATTATTGTGAAAAATGTTGCCTCTAATCATTAGGGTATTTTGATGGGTTTTACTAAGTT
TTGCATAAATATATTCACACACCACCATACCACCCCTCAATCAAAGGAGTTAAGGTGGGG
ATGGAGAGATGACTCATTAGTTAAGAGCACTGACTGCTCTTGCAAAGGACCCAGGCTTGA
GTAGTTCACTGCAACTCTAATTCCAGAAGATCTAATGTCCATTTTTGGCCTCCTCAAGCA
CTGCACACACATGGTGCATAGACATATATGCAGGCAAAATACCCATACACATAGCATAAA
AATAAATCTCAAAGAAAAAAAGCTTAGGTGATTTCCTTGATGCAAAGCTCACAACATACT
CCAGGAAGAAAGCAGCATACTTGGGACAATTATATAAACTGTTCTCTCCTTTGCAAACCA
GTAGCATCAATGAAGTGGACAGCAAGACTCAAGTGTTTACACTCGTACTAACTAGCTTTG
ATGGGATGATTCTTTTTCTACATATTTCAGGATTTGTTTTTACTTTTAGGTTTTGCAGAT
GAGAACATTCTTCATGACAGAAATCCTATGCAGCACTTATATGGCTTTTGATGAGACCAA
GGAGCTCAATATCTGTAATGTAAATTAAATGCTAATCATAATTCAGTATTCAGTTGCAAA
AATACAATATATAAAAAGAGTCTTTGGGGAAGGGACAGAGTGAGATTCAGATTCTCAGGT
GTGTGCATCTTATATTGGAATGCACCCACAGAGCCACAGGAGAGGAACAGGGACTATTTC
AAGGTCTGTGTTCATGTCTGTTTCCAGAACTGTTTCCAGGTGCAGAATGACATGGGTCAG
CAGGTATGATTCCGGAAACCACGTGCCACATCTTTCGAGTGCCAAATTTTGTCCAATTAC
AGAACTGATATGGAATCCCCAAAATCTGAGAATAAGTGGTTTCCCAAAACAGACAAAAGA
AGAATAATCAGGTTCCCTGCTGTGTACAGACTTACCCTCTTCCCATCCAAGGTCAAAATG
ATGTGTCTACTAGAGACTTTGGGACACAATTTAGCAAGTGAGAGCATACAGATGCAATGT
GTATGCCATTAAAAATACTGCCTGGACTGCTTGAGGGCTTACCACTCCATCAGCTAAGAT
TTGTATTTGAATCATCTGTAAATTCGTGCTCTTACAAGCTTCTGAGTTTTAAATACCTCC
ACACAGCAAGTAAACATTCCCGCTTTCTGTTTTCGGTGTCCTTGGTCATGGTGCTTTTTG
TTGCATTAAAAGTGCCGGTCAAACTTT
3' upstream sequence
GATAGTATTTTTTTATAGTTGGTGCAGAGTGGAATAACTCATGGATTATTTCAATATTTT
TGTAATAAAAATATAGGGTGTACATATAGGCATCATTGCTTTTTTTATAGACTTGGAATT
ATTTAAAATATGTTAAATGTCATATTCACTTGGGATGTCAGAATCCAGTCTACAAATCCA
TCAGCCTGCCTCACCAGATGGAAAACACTTGTCTCTGGCAAGATCACCTTACATTTAGCA
ATTTGATGGCCCTGAGAATCTGAGCAGGGGTGCTATCAGAGTATCAAGTGAAGAGGGAAG
TAGCCTAACTAGATAAGGGCTTGTGAAGACTGGCCAATGTCTCCCAGGAAATCAAATATG
TGATTTCTTTCATCCATCCATTAGAACAACCTGACCACAGTGGAAGATGTCTTAAACTTC
CTTGCCTGGTTTTATACTATCCCAGCTGATATATTAAAGATTAGACAAGTCATTTTAAAA
AGATGGAAGAAAGTCAGTTTCATTTAAGTATTCATTTAAAATAGTTAAGATCTAGAGCCA
CCACCTGAAATGGACATGATATCCAAAGATTGTGGTCCCCAAAGTAACATCTGCAGGAAG
TGACAGAGGGCTCAACCTGGGACTTTTTGGTACAAAGCCCCAAAACAATTTTTAAAGACA
GACAATTTTTATCAGACATATTTCATAATATTCAAAGATTTGACCCTTCAAGCAAGATTT
CCACTACAATACTCTGATCTTTTGTTGAAATGAAAAAAAATATTACCTTGCCACAGTAAA
GCTCCAAGAAGACACTTGGCTTCTAGCAAATGGTGAACACATTCCATTCCAGTGCTGAAG
AGAATCACAATAATTTGGGCAGATACTTTGCAGGTATGCAGAACCATGAGTTATTAACTT
CATTAGTTCCAAGACAACTTTTAGCTGATGAACTCTGAAGACTCACCCTCCCAGGTGGAA
CACAGCTTTGATTCTGTGAACACAGTTCCAATGTAATAGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Xkr4 (ENSMUSG00000051951)
Transcript ID ENSMUST00000070533
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 648 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information