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Target CDS Information

Gene Symbol (Gene ID) Cspp1 (ENSMUSG00000056763)
Cross Reference
CCDS CCDS35511.1
GO GO:0000922, GO:0000922, GO:0005515, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Cspp1-004
OTTP OTTMUSP00000034200
OTTT OTTMUST00000067846
RefSeq_mRNA NM_026493.3
RefSeq_mRNA_predicted XM_006495483, XM_006495484
RefSeq_peptide NP_080769
RefSeq_peptide_predicted XP_006495542.2, XP_006495545.1, XP_006495546.1, ...show all
UCSC uc007ahi.1
UniParc UPI0000F0887C
Uniprot/SWISSPROT B2RX88
Vega_transcript Cspp1-004, OTTMUST00000067846
Vega_translation 178694, OTTMUSP00000034200
Definition protein_id:ENSMUSP00000068804
translation:
MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ
QQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSL
PIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLP
LQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAG
VPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRPHGSRR
GYVDGDDVPEEPNTQISAAENKSVHCNGPPRSADLDITSPFAGMLFGGEDRELTKRRKEK
YRQELLEQIAEQQKKKRREKDLAFGITTSGVQDPEKSPDRLKQFSLTPRHFEEMPPERPR
VAFQTPPPPFSAPSSPSVPPVHSAPSHNEDLHSGLGSTLGELAHPRVLPVPLNPPPPPLL
APPASNYRTPYDDAYYFYGARNTLDPNIVYYGSGMIGGQPAPHVSAPVTHQVAPPAVNTV
GQNEQKVLSDGLRNSGLVFEDKPKPSTQSLQSYQEALQEQIREREARRKKERLEKEEYEA
KLEAEMRIYNPWGKGGGGAPLRDAKGNLITDLNRMHRQNIDAYHNPDARTYEDKRAVVSI
DQNLATSNAENLEDSANKNSGPLQTQSSPFARGNTFGEPLSELQIKQQELYKNFLRFQIE
EKRQREEAEREKLRVAEEKEEKRLAEQRARIQQEYEEEQERRREKEEEQRLKNEELIRLA
EERRKEAERKKKEEEEKHNLQLQHYYERENIIGDETKHLRQPSPVVPALQNKIASKLQRP
PSVDTIISSFIHESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRKQLRSEERRLQG
RLLHLDSDDEIPMRKRERNPMDIFDMARHRVQAPVRRPSPKGLDATTFQNIHDFNELRER
DSDTRVDLRLMYPDPPRDHHTLEIQQQALLREQQKRLNRIKMRRDAGADLDTICTDNAQG
RRMPRDDTNDFLKNSLLESDSAFIGAYGETYPVIEDNAFPPPSQLPSARERRRNKLKGLD
FDSSRLHTPQDGLSLKSISSVNVDQVRMRNEDRMRRLTEQQKKPTNTDDEGSLVDPDDIM
RHLSDDGRNSAATEPWLRPGTSESLKRFMAEHLNEEQHKGPGKPGTFTWQGLSAAHA

Chromosome 1
Length
Position(start - end)
91,058
10,045,086 - 10,136,145
Orient to Chromosome plus
Link Location : (1:10045086-10136145)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cspp1 (ENSMUSG00000056763)
Transcript ID ENSMUST00000071087
Reports
substitution
cSNPs11
Insertion71
Deletion94
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num8
non-synonymous num3
synonymous substitutions 10047432 (p.Ala36Ala), 10066713 (p.Gln258Gln), 10088135 (p.Ala494Ala), 10090218 (p.Val547Val), 10095955 (p.Asn610Asn), 10112899 (p.Leu776Leu), 10112932 (p.Ala787Ala), 10127472 (p.Arg977Arg),
non-synonymous substitutions 10066691 (p.Gly251Glu), 10134095 (p.Ser1083Gly), 10135951 (p.Val1134Ile),
B6 transcript
(ENSMUST00000071087)
MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ
QQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSL
PIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLP
LQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAG
VPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRPHGSRR
GYVDGDDVPEEPNTQISAAENKSVHCNGPPRSADLDITSPFAGMLFGGEDRELTKRRKEK
YRQELLEQIAEQQKKKRREKDLAFGITTSGVQDPEKSPDRLKQFSLTPRHFEEMPPERPR
VAFQTPPPPFSAPSSPSVPPVHSAPSHNEDLHSGLGSTLGELAHPRVLPVPLNPPPPPLL
APPASNYRTPYDDAYYFYGARNTLDPNIVYYGSGMIGGQPAPHVSAPVTHQVAPPAVNTV
GQNEQKVLSDGLRNSGLVFEDKPKPSTQSLQSYQEALQEQIREREARRKKERLEKEEYEA
KLEAEMRIYNPWGKGGGGAPLRDAKGNLITDLNRMHRQNIDAYHNPDARTYEDKRAVVSI
DQNLATSNAENLEDSANKNSGPLQTQSSPFARGNTFGEPLSELQIKQQELYKNFLRFQIE
EKRQREEAEREKLRVAEEKEEKRLAEQRARIQQEYEEEQERRREKEEEQRLKNEELIRLA
EERRKEAERKKKEEEEKHNLQLQHYYERENIIGDETKHLRQPSPVVPALQNKIASKLQRP
PSVDTIISSFIHESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRKQLRSEERRLQG
RLLHLDSDDEIPMRKRERNPMDIFDMARHRVQAPVRRPSPKGLDATTFQNIHDFNELRER
DSDTRVDLRLMYPDPPRDHHTLEIQQQALLREQQKRLNRIKMRRDAGADLDTICTDNAQG
RRMPRDDTNDFLKNSLLESDSAFIGAYGETYPVIEDNAFPPPSQLPSARERRRNKLKGLD
FDSSRLHTPQDGLSLKSISSVNVDQVRMRNEDRMRRLTEQQKKPTNTDDEGSLVDPDDIM
RHLSDDGRNSAATEPWLRPGTSESLKRFMAEHLNEEQHKGPGKPGTFTWQGLSAAHA*
MSMv4 transcript
MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ
QQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSL
PIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLP
LQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAG
VPERRARRANEERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRPHGSRR
GYVDGDDVPEEPNTQISAAENKSVHCNGPPRSADLDITSPFAGMLFGGEDRELTKRRKEK
YRQELLEQIAEQQKKKRREKDLAFGITTSGVQDPEKSPDRLKQFSLTPRHFEEMPPERPR
VAFQTPPPPFSAPSSPSVPPVHSAPSHNEDLHSGLGSTLGELAHPRVLPVPLNPPPPPLL
APPASNYRTPYDDAYYFYGARNTLDPNIVYYGSGMIGGQPAPHVSAPVTHQVAPPAVNTV
GQNEQKVLSDGLRNSGLVFEDKPKPSTQSLQSYQEALQEQIREREARRKKERLEKEEYEA
KLEAEMRIYNPWGKGGGGAPLRDAKGNLITDLNRMHRQNIDAYHNPDARTYEDKRAVVSI
DQNLATSNAENLEDSANKNSGPLQTQSSPFARGNTFGEPLSELQIKQQELYKNFLRFQIE
EKRQREEAEREKLRVAEEKEEKRLAEQRARIQQEYEEEQERRREKEEEQRLKNEELIRLA
EERRKEAERKKKEEEEKHNLQLQHYYERENIIGDETKHLRQPSPVVPALQNKIASKLQRP
PSVDTIISSFIHESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRKQLRSEERRLQG
RLLHLDSDDEIPMRKRERNPMDIFDMARHRVQAPVRRPSPKGLDATTFQNIHDFNELRER
DSDTRVDLRLMYPDPPRDHHTLEIQQQALLREQQKRLNRIKMRRDAGADLDTICTDNAQG
RRMPRDDTNDFLKNSLLESDSAFIGAYGETYPVIEDNAFPPPSQLPSARERRRNKLKGLD
FDGSRLHTPQDGLSLKSISSVNVDQVRMRNEDRMRRLTEQQKKPTNTDDEGSLIDPDDIM
RHLSDDGRNSAATEPWLRPGTSESLKRFMAEHLNEEQHKGPGKPGTFTWQGLSAAHA*
homology99.75 (1198 / 1198)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cspp1 (ENSMUSG00000056763)
Transcript ID ENSMUST00000071087
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAAGAGCTGAAAAAAAACCAAACCAATCAATCCAAGAGCTCATGGATTTT
TTTTTTTTTTTTAAATCAATGCCCTGCTCATTCGATTTCTGAAAACAGCCACGCTCTTCA
GTTTGGGAATCTACTGAAGGCTGCAACTAACTGCATGTAGCCACCAGGTTCAAGGCAGAG
TGTGTGAGATTTACAAAAATAATCATGTTGACAAAAGTCGCACCCCAAGTCAGCCCTTTA
CACGCCCTGAAGGCAAGAAACTTTCTAAAAGGGGAATCGAAGCAGGCCCTAGAGGACAGG
TAAGGCTCTACTGACAAGGCAGACTAAGGCCACTGTGGCCAATATTCGGTCGACGCCCCA
CAGAAAGCCAAGCTCTCCACACCCTTCATCTCCCACCCCTCGCGGGTCTCTCACAGTCCC
GCCATCCCTGCCCTCCCCTGCGTCTCGCCAGGGACCTCCTCACTCCTTAGTCCAGGGTTT
CGCCGCCAGGATTTCTTGTTGTTGTTTTTTGTCATATTTGTAGATTTCATCGATACTCTG
CGCTTCCTGCATGTTGTTGGCCAATTCCCAGGTTTTCTGGGCCATACCACTCCCGGAAGC
TGCCATGGCCGAGGCACCGGAGAAGCTGTCGCTCCACAATCAAGATGCAACTTTCTTCTA
CTGGGCCTCAGCGTGCGGGCTTTGGACCTTCCCCACCAGGGTGCACACTCACTAGACTCT
CAAGGCAGCCATGACACTTGAGACCGGAGGTGACGTTGGTCCAGACCATTCGCGCGCTGG
GGCGCGGCGGCGGCGCAGCGACATAGAAAACACTTCCTTAGCGTTGGTTCGGCTCGGCTC
GGCTAAGATCAGTCTTGCCGGTGAAACGAGAACATGCTGGCTCGGAAATCCGTTCCTGTG
AACTGCGAGGGACGCAAAGCCTCGGTGTGGGAATGGTACAGCCTTTCGCGCCGGAAGGCG
GGACTATTGGCCTGCCAGGAAGGAGTCGGCCGGCTCGGCTCGTACTGCGC
1 EXON 1 10,038,217 10,038,344 - - 128
AGACTCAGATGCCACCATATTGTGTGTAGGAGGAAACTTGAGTTTGGGGAATTATGTTTA
TGTGAGTGTAGGTGCTTCAAACGAAATAAATTGTTTGGAATACTAAATGTCTCTAGAGAA
ACAGAGGT
INTRON 1 - 2 10,038,345 10,045,075 6,731
GTAAGTATCTCCGGATTATTGGTTT..........CTCACTGAAGACTTTTTTTTTTCAG
2 EXON 2 10,045,076 10,045,184 - 0 109
AATCTACAAAATGGCAGATAGCTTGGATGAATTTATTGAAGAGCAAAAAGCGAAACTGGC
CAAAGACAAAGCAGAATTGGAAAGTGATCCACCGTACATGGAGATGAAG
INTRON 2 - 3 10,045,185 10,047,423 2,239
GCAAGATTAGTAATTGTCTTGCAGT..........TGATTTGTAAATATGTCTTTTCCAG
3 EXON 3 10,047,424 10,047,526 0 1 103
GGAAAGGCATCAGAGAAACTCTCTGAAAACAGTAAAATATTAATCTCTATGGCTAAGGAG
AACATTCCACCAAGCAGCCAACAACAGCCCAAGGGACCCTTAG
INTRON 3 - 4 10,047,527 10,058,719 11,193
GTATGGTACTGTATGTGTGGAGCTA..........CGACTTAAGCTGTTTTCTTTTTTAG
4 EXON 4 10,058,720 10,058,823 1 0 104
GAATTGAATATGGCTTAAGTTTACCGCTTGGAGAAGATTATGAACAGAAGAAACATAAAT
TAAAAGAAGAATTGAGGCAAGATTATAGACGATATCTTACTCAG
INTRON 4 - 5 10,058,824 10,064,332 5,509
GTAAGTTGTTCTGTTAGTGAGTTGT..........TATATTTTAATGTGCATATATACAG
5 EXON 5 10,064,333 10,064,413 0 0 81
AAAAATTTCCTATCTACTGGTGAAACAGACCCATCTACTCTGGGAGTTTCTCTTCCCATT
GATGAGCGGTTATCTGCCAAG
INTRON 5 - 6 10,064,414 10,065,322 909
GTAGGTGGATAGGAATAAGAGTTTC..........ATTGTTTTTCAATTTTTTTGTAAAG
6 EXON 6 10,065,323 10,065,421 0 0 99
GAAAGATTGAAACTTGAACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAA
TCCACAGAAAAAGTCAGACAGGTAGAAAAGAATATTGAG
INTRON 6 - 7 10,065,422 10,066,425 1,004
GTATGTTTTACTTTTATAAAGTGAT..........CTTTTTTTCTTTTTTAATTCAACAG
7 EXON 7 10,066,426 10,066,820 0 2 395
CCTAAGAGTCAAAGAAATAAAAACCCTATTAGTCAAGGTAAATCTGATCTACCTTTACAA
ATACAGACTGCATACACACATTCAGAGGGACCCTGGCTAAGCCGGCAAGAGGAGGGCCTG
TACCGACAGCTAGATGGTGAAATTGAATTAAGGAGCAGAAGACCGCTTAAACAAACAAAG
GAAGAAGTAGGCATTTCTGGTGCAGAACATCCAAGCCTTTCTGGCAGCGCTGGTGTCCCA
GAGAGAAGAGCCCGCAGGGCTAACGAGGAGCGGGTGCTTGACAGACAGCATTGCAGAGCC
GACCGAGACCCTGGTGTGAGTGAAGACATGGACGAGAGGTTTAGATTTGAAAGTGATTTT
GATAGAAGACTTTTGAGAGTGTATACAAATGGCAG
INTRON 7 - 8 10,066,821 10,074,859 8,039
GTATTTACATCTTCACTTTTCTTCT..........CTTTATAAGCTAATGTGTTTTGAAG
8 EXON 8 10,074,860 10,074,946 2 2 87
GCCGCATGGGAGCAGACGAGGGTATGTGGATGGGGATGATGTCCCAGAAGAGCCAAACAC
ACAGATCTCAGCTGCTGAAAATAAAAG
INTRON 8 - 9 10,074,947 10,077,171 2,225
GTACGTGACAGCAATGATCTCCTTG..........TGCTCTCTCATATTGTTTGTTTTAG
9 EXON 9 10,077,172 10,077,242 2 1 71
TGTTCACTGTAATGGACCACCCAGATCTGCTGATCTCGATATCACAAGTCCATTTGCAGG
CATGCTCTTTG
INTRON 9 - 10 10,077,243 10,082,252 5,010
GTATGTCCAGCACTTTCAGCTGATT..........GTTTATTTCTTTATTTTTTATCCAG
10 EXON 10 10,082,253 10,082,346 1 2 94
GAGGTGAAGATCGAGAACTTACCAAGAGAAGGAAGGAGAAATATAGGCAAGAACTACTAG
AACAGATAGCTGAGCAACAGAAGAAGAAGAGACG
INTRON 10 - 11 10,082,347 10,083,500 1,154
GTAATGAAAAGCTTGCATTTAGCAG..........TTTACAAAATCTTAATTTTGTTTAG
11 EXON 11 10,083,501 10,083,558 2 0 58
AGAAAAAGATTTAGCATTTGGAATTACAACTTCTGGAGTACAAGACCCTGAAAAATCG
INTRON 11 - 12 10,083,559 10,085,746 2,188
GTAAGAGTTCTTGGCATCTTTTAGT..........TTTTTTGTCTTTTTCTTTATTGTAG
12 EXON 12 10,085,747 10,085,952 0 2 206
CCTGATAGACTAAAGCAGTTTAGTTTGACACCAAGACACTTTGAAGAGATGCCACCTGAG
AGGCCCAGAGTAGCTTTCCAGACACCTCCCCCTCCCTTCTCTGCCCCGTCTAGCCCATCC
GTCCCACCAGTTCATTCCGCCCCTTCTCACAATGAAGACTTGCACAGTGGACTCGGCAGC
ACCCTTGGTGAACTGGCGCATCCCAG
INTRON 12 - 13 10,085,953 10,088,050 2,098
GTGCTTGTTTAAATGTTTGTCTTTG..........TGTTTTTGGTTTTCTTTTGCTATAG
13 EXON 13 10,088,051 10,088,184 2 1 134
GGTTCTGCCTGTGCCTCTGAATCCACCCCCGCCTCCGCTCCTTGCCCCTCCAGCTTCTAA
CTATCGAACTCCTTACGATGATGCCTACTATTTTTACGGTGCCAGAAATACACTGGATCC
CAATATTGTATACT
INTRON 13 - 14 10,088,185 10,088,881 697
GTGAGTTTTCTATATGTTCTATAAA..........TGTCCTTTTTTCTGTTTCCCTTTAG
14 EXON 14 10,088,882 10,088,960 1 2 79
ATGGTTCAGGAATGATTGGAGGACAGCCTGCCCCTCATGTCTCTGCCCCTGTCACTCACC
AGGTAGCACCGCCAGCTGT
INTRON 14 - 15 10,088,961 10,090,187 1,227
GTAAGTCTTAAAATAAAATAAAGTT..........ATTGAAATTGTTTATTTGCTCTTAG
15 EXON 15 10,090,188 10,090,317 2 0 130
GAATACTGTTGGACAGAATGAACAGAAAGTCCTTAGTGATGGACTCAGGAATTCAGGACT
GGTCTTTGAGGATAAGCCAAAACCTTCTACACAGTCGCTTCAGTCTTACCAAGAAGCTTT
GCAGGAGCAG
INTRON 15 - 16 10,090,318 10,095,865 5,548
GTATTCATTCATTCATTTATTCATT..........ATTAAGCATATCTTATGTTGTCAAG
16 EXON 16 10,095,866 10,096,013 0 1 148
ATTCGGGAAAGAGAAGCAAGAAGGAAGAAAGAACGTTTAGAAAAAGAAGAATATGAAGCT
AAATTAGAAGCCGAAATGAGGATCTACAATCCCTGGGGGAAGGGCGGAGGTGGTGCTCCT
CTCAGAGACGCCAAAGGAAATCTGATAA
INTRON 16 - 17 10,096,014 10,104,211 8,198
GTATGATGTGTTCATAAACTTGCTT..........TAAATGGATTATTTTTCCCTCTCAG
17 EXON 17 10,104,212 10,104,364 1 1 153
CTGATTTGAATAGGATGCACAGACAGAATATAGATGCCTACCATAACCCAGATGCAAGAA
CATATGAAGATAAAAGGGCTGTTGTATCTATAGACCAAAATTTAGCCACTTCAAATGCTG
AGAACCTAGAAGATTCTGCAAATAAAAACTCAG
INTRON 17 - 18 10,104,365 10,108,368 4,004
GTTTTTAATCATATTCTATATTTAA..........TGTTTTTGCAAATTGTCTTTTGAAG
18 EXON 18 10,108,369 10,108,481 1 0 113
GTCCTTTGCAAACACAAAGCTCTCCTTTTGCCCGGGGAAACACATTTGGTGAGCCACTCA
GCGAGCTTCAGATTAAACAGCAAGAATTATACAAGAATTTTCTTCGTTTTCAG
INTRON 18 - 19 10,108,482 10,112,392 3,911
GTGAAAGCCTTGTTTGGTTATAGTT..........ATAATCACTAAGTCCAATTCTTTAG
19 EXON 19 10,112,393 10,112,542 0 0 150
ATTGAGGAAAAGAGACAAAGAGAAGAAGCCGAGCGCGAGAAGCTGAGAGTTGCTGAAGAG
AAGGAAGAAAAGCGGCTTGCGGAGCAGAGGGCAAGGATTCAGCAAGAGTATGAGGAGGAG
CAGGAGCGGAGGAGGGAGAAGGAGGAGGAG
INTRON 19 - 20 10,112,543 10,112,875 333
GTGTGTCTGTTTCTCCAGCCAAAGT..........CGTGTGTCTTTTTTAAATTTTAAAG
20 EXON 20 10,112,876 10,113,022 0 0 147
CAAAGGTTGAAAAATGAAGAACTGATTCGGTTAGCTGAAGAGAGGCGAAAGGAAGCAGAA
AGAAAGAAGAAAGAGGAGGAAGAAAAACATAACTTGCAACTTCAGCATTACTATGAGAGA
GAAAATATTATCGGAGATGAAACAAAG
INTRON 20 - 21 10,113,023 10,113,602 580
GTATGTCTTGGACAGAGGCATGTCG..........TGTACAGAAATCATTTTTTTTTCAG
21 EXON 21 10,113,603 10,113,707 0 0 105
CACTTGAGACAGCCTTCTCCTGTAGTTCCTGCTCTTCAGAACAAAATTGCAAGCAAACTC
CAAAGACCTCCTTCAGTCGACACCATCATAAGTTCCTTCATTCAC
INTRON 21 - 22 10,113,708 10,116,017 2,310
GTACATACTTTTTTCTCAGGGTTAA..........ACTGTGCCTGTCCTGTTGGCCACAG
22 EXON 22 10,116,018 10,116,084 0 1 67
GAAAGCTCCATGTCCCGGGCACAGTCTCCTCCAGTGCCTGCAAGGAAGAACCAACTCCGT
GCAGAAG
INTRON 22 - 23 10,116,085 10,116,613 529
GTGGGTTGGACGTCTATAAATGAGA..........CTCTCTTCTCTATGGGAATTTGCAG
23 EXON 23 10,116,614 10,116,731 1 2 118
AGGAGAAAAAAAATGTGATTATGGAGTTATCAGAAATGAGGAAGCAGCTCCGGAGCGAGG
AGAGGCGTTTGCAGGGGCGGCTGCTGCACCTGGACAGTGACGACGAGATCCCCATGAG
INTRON 23 - 24 10,116,732 10,126,339 9,608
GTGCTTCTGCGCATCTTCCTGGAGT..........ATTGATCATGATTTGCTATTTTTAG
24 EXON 24 10,126,340 10,126,479 2 1 140
GAAAAGAGAGAGGAACCCAATGGATATATTTGACATGGCTAGACATCGGGTACAAGCCCC
TGTCAGAAGACCATCGCCTAAGGGCTTAGATGCTACTACTTTTCAGAATATTCATGACTT
TAATGAGCTGAGAGAGAGAG
INTRON 24 - 25 10,126,480 10,127,422 943
GTGAGCATAAAGTTATAATTGTTCT..........CTTAGTTATGTAACTTTTGTGACAG
25 EXON 25 10,127,423 10,127,563 1 1 141
ATTCAGATACTCGAGTGGATCTGAGATTAATGTACCCAGATCCTCCCCGAGATCATCACA
CCTTGGAGATTCAGCAGCAGGCCCTACTCCGAGAGCAGCAGAAGAGGCTTAATAGAATAA
AGATGCGGAGAGATGCAGGAG
INTRON 25 - 26 10,127,564 10,129,985 2,422
GTAAGTGCAAGCCTGGCTGCTTTAC..........CATTATTCTTTTGTTCTGTTTACAG
26 EXON 26 10,129,986 10,130,032 1 0 47
CTGATTTGGACACCATCTGCACTGATAATGCACAAGGGCGCAGAATG
INTRON 26 - 27 10,130,033 10,132,453 2,421
GTAAGCAACCAGTTCAAATTCCTCA..........ACAATTGTTGTTTTTTTTATTTTAG
27 EXON 27 10,132,454 10,132,517 0 1 64
CCCAGAGATGACACTAATGATTTTTTGAAAAATTCATTACTAGAATCTGATAGTGCTTTT
ATTG
INTRON 27 - 28 10,132,518 10,133,163 646
GTGAGTATATCTAATGTGATATTAA..........CATATTCTTTGTGTGGCCTGTTTAG
28 EXON 28 10,133,164 10,133,273 1 0 110
GTGCTTATGGTGAGACATATCCTGTTATTGAAGACAATGCCTTCCCTCCACCATCACAGC
TGCCCTCTGCAAGGGAACGCAGGAGGAACAAATTAAAAGGACTAGATTTT
INTRON 28 - 29 10,133,274 10,134,091 818
GTATGTATGATCTTCTCAGTTTAGA..........CCTAAATTCTCTCTCTTAACTTTAG
29 EXON 29 10,134,092 10,134,230 0 1 139
GACGGTAGTCGGCTGCACACCCCACAAGATGGTCTCTCTTTAAAATCTATCTCCAGTGTA
AATGTCGATCAAGTTAGAATGAGAAATGAAGACAGAATGAGAAGACTGACTGAGCAGCAG
AAGAAACCCACTAACACAG
INTRON 29 - 30 10,134,231 10,135,933 1,703
GTACTTCCATACAAGATATCCACTG..........GACTTGTATCTTTTGCCTTCTGTAG
30 EXON 30 10,135,934 10,136,768 1 - 835
ATGATGAGGGTTCACTGATTGATCCTGATGACATCATGAGACACCTGAGTGATGATGGAC
GCAACTCTGCGGCAACTGAGCCCTGGCTCCGCCCTGGCACTTCAGAAAGTCTGAAACGGT
TCATGGCAGAGCATCTGAATGAAGAACAGCATAAGGGGCCTGGGAAGCCAGGCACGTTTA
CTTGGCAGGGCCTCTCTGCTGCACATGCTTAAAATAAACCCTCTCGGATCCAGTAGTGCC
TTTTACAGTGGAACGTTCACCTGTATCTTGAATACTATGTCTTGCTTGTGGCCCTACTTT
AATATTAGTTATTTATGTAAAGTGTATTTTTCCCATGATGATACGTTATGTATATATAAT
GTACATAAAAGCCCTGATTATTGGTTTCTAATTGTATAGAATTATTTTTGCAATTTTGCT
ATGGGTGGTAATGAACTCTTGATTGAGCTACCGTATGTGCATTAAAATGTGCTTGCCATT
AAGAGGTGGTGAGCTAGAGTGTACACAGCACTGTGAAACAATACACTGTTACTAGCCTAC
TTGCCACTGTTAGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACCTGCTGT
TGCTGTGACTATGCCAGCTGCTAGGCAATGAAAGATTCAAACAAGCTGCTCATTTTCATA
TCTGTAGTTACACATTCCATAGGAGCAAAGGGATTTGTGATCATCCATGAGCCATGATTA
AATGTTACATTTTTCTGCCTCCATCTTATTTTTATGCTGATAGAAGCACAGACTGGGTTA
TTAATTTATCTGATTTCACTATTTCTTAACACAAATAAAGTTCTATTTTTATTAA
3' upstream sequence
CTACCAGTGTCGGTTTCTTTCTTTACTCAAAGTGTTTCTAGGGGTTAAAAAGGTCCCATC
CAGAGAGGATAGAGGCAGTGGTCTTCTGTCCCACCACCTGAGACCCTTGGCTACGTGAAC
TGATAAGTAAATGATATTTTACTTCATAAAGACTCATTCAACTTTTAGAAATTCTAGAAA
ATAATTCTTACTTGGATTAGGGTCTTCAATGTGTACCATGATGGCAGTTGAAGACAGGCA
GCCACTGCTTCTCTGTAATTTCCAGGGATAACATCAACATCCGATTTTGACATTAGAGTT
TACCAAAAATAAGACATTTTTGGTATTCTTTCTTGTTTTTTTTTTTCCTTTGGCTACATC
TAATTTTTATGTTCAATTTTGCTCTGATAATAGGTTTTCTTCTGTCAACATTTGAAAATA
ACAATTGTGTCCTCTTCAGCCATGGGAGGAAATGGCTTAGACTAGAAAACACTGAAGTAA
CTTAGTTCTAGCATTTAACCTGGCCTTGTCATAAATACTAACTTCTCATTATTTAGGGAC
ATATTTCCTGTTTTGAAATTAACCACTGCAGTTTTGATTTTTAATGCTATGTACCACGGA
ACTGACTGATCTATAAAATGCCATAGTATAAACTACCAGCATTATCACTGAGTAATAAAT
ATGCTTTTGGGTATCTTAAGATTAAGAAAGGAAGTTGAAGAATCCAATGTAGACTGTGAA
GAAGGGTCTCTGTAGCTTAAAAAAAATCTTTTCATGGTTTGACCTTTAATTAAAACAAAC
AAAAAACAATGAAAACAGGGCTGTGGGTTACACTGCACTGATGAAATAATTCAAAAACTT
TATTGACCTATAACCTGATTAGATATGCCAGATGAGAATCAATATTGTACAGAAAGTTGT
ACAGAATTTTTTACATAGAAAACTTTACATCTGTACCATATACATATCCACCTGAAAACA
TTTTCTACATCCACTGTTATATGGAATGCTTGATAAGCTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Cspp1 (ENSMUSG00000056763)
Transcript ID ENSMUST00000071087
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1198 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information