MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Psmd4 (ENSMUSG00000005625)

Cross Reference

CCDS	CCDS71287.1
EMBL	AK145524
Fantom	I1C0010E10
GO	GO:0000502, GO:0005515, GO:0005654, ...show all
MGI_trans_name	Psmd4-001
OTTP	OTTMUSP00000021245
OTTT	OTTMUST00000047018
protein_id	BAE26484.1
RefSeq_mRNA	NM_001282017.1
RefSeq_peptide	NP_001268946

UCSC	uc008qhs.2
UniParc	UPI000002B1B5
Uniprot/SPTREMBL	Q3ULG4
Vega_transcript	OTTMUST00000047018, Psmd4-001
Vega_translation	188029, OTTMUSP00000021245

Definition

protein_id:ENSMUSP00000071589
translation:

MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
ASAAEAGIATPGTEGERDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQG
TEFSQESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGA
LASQATKDGKNDKKEEEKK

Chromosome

Length
Position(start - end)

9,718
95,032,814 - 95,042,533

Orient to Chromosome

minus

Link

Location : (3:95032814-95042533)
/

Detail Map

name	Psmd4 (ENSMUSG00000005625)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Psmd4 note : proteasome (prosome, macropain) 26S subunit, non- ATPase, 4 [Source:MGI Symbol;Acc:MGI:1201670]

name	Psmd4 (ENSMUSG00000005625)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000107237

name	Psmd4 (ENSMUSG00000005625)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000071664

name	Psmd4 (ENSMUSG00000005625)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000140348

name	Psmd4 (ENSMUSG00000005625)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000117355

name	Psmd4 (ENSMUSG00000005625) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS38541.1 Uniprot/SWISSPROT:O35226 RefSeq_peptide:NP_032977 RefSeq_mRNA:NM_008951.2 Vega_transcript:OTTMUST00000047019 Vega_transcript:Psmd4-002 UCSC:uc008qhr.2 EMBL:AB029090 EMBL:AB029142 EMBL:AB029143 EMBL:AB029144 EMBL:AB029145 EMBL:AB029146 EMBL:AF013099 EMBL:AF175574 EMBL:BC009005 GO:GO:0000502 GO:GO:0005654 GO:GO:0005737 GO:GO:0006511 GO:GO:0008540 GO:GO:0022624 GO:GO:0042802 GO:GO:0044822 MGI_trans_name:Psmd4-002 Vega_translation:188028 Vega_translation:OTTMUSP00000021246 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAC53547.1 protein_id:AAG09199.1 protein_id:AAH09005.1 protein_id:BAA97572.1 protein_id:BAA97573.1 protein_id:BAA97574.1 protein_id:BAA97575.1 protein_id:BAA97576.1 protein_id:BAA97577.1 OTTP:OTTMUSP00000021246 OTTT:OTTMUST00000047019 Reactome:R-MMU-109581 Reactome:R-MMU-112399 Reactome:R-MMU-112412 Reactome:R-MMU-1168372 Reactome:R-MMU-1169091 Reactome:R-MMU-1227986 Reactome:R-MMU-1236394 Reactome:R-MMU-1236974 Reactome:R-MMU-1236975 Reactome:R-MMU-1236978 Reactome:R-MMU-1250196 Reactome:R-MMU-1250347 Reactome:R-MMU-1266738 Reactome:R-MMU-1280215 Reactome:R-MMU-1280218 Reactome:R-MMU-1430728 Reactome:R-MMU-1433557 Reactome:R-MMU-162582 Reactome:R-MMU-1640170 Reactome:R-MMU-166520 Reactome:R-MMU-167044 Reactome:R-MMU-168249 Reactome:R-MMU-168256 Reactome:R-MMU-169893 Reactome:R-MMU-169911 Reactome:R-MMU-170968 Reactome:R-MMU-170984 Reactome:R-MMU-174084 Reactome:R-MMU-174113 Reactome:R-MMU-174143 Reactome:R-MMU-174154 Reactome:R-MMU-174178 Reactome:R-MMU-174184 Reactome:R-MMU-176408 Reactome:R-MMU-176409 Reactome:R-MMU-176814 Reactome:R-MMU-177929 Reactome:R-MMU-179419 Reactome:R-MMU-179812 Reactome:R-MMU-180336 Reactome:R-MMU-186763 Reactome:R-MMU-186797 Reactome:R-MMU-187037 Reactome:R-MMU-187577 Reactome:R-MMU-187687 Reactome:R-MMU-187706 Reactome:R-MMU-190236 Reactome:R-MMU-194138 Reactome:R-MMU-195253 Reactome:R-MMU-195721 Reactome:R-MMU-1963640 Reactome:R-MMU-201681 Reactome:R-MMU-211733 Reactome:R-MMU-2172127 Reactome:R-MMU-2404192 Reactome:R-MMU-2424491 Reactome:R-MMU-2428924 Reactome:R-MMU-2428928 Reactome:R-MMU-2454202 Reactome:R-MMU-2467813 Reactome:R-MMU-2555396 Reactome:R-MMU-2586552 Reactome:R-MMU-2871796 Reactome:R-MMU-2871837 Reactome:R-MMU-349425 Reactome:R-MMU-350562 Reactome:R-MMU-372790 Reactome:R-MMU-375165 Reactome:R-MMU-3858494 Reactome:R-MMU-4086400 Reactome:R-MMU-422475 Reactome:R-MMU-4420097 Reactome:R-MMU-449147 Reactome:R-MMU-450408 Reactome:R-MMU-450531 Reactome:R-MMU-451927 Reactome:R-MMU-453276 Reactome:R-MMU-453279 Reactome:R-MMU-4608870 Reactome:R-MMU-4641257 Reactome:R-MMU-4641258 Reactome:R-MMU-512988 Reactome:R-MMU-5218921 Reactome:R-MMU-5357801 Reactome:R-MMU-5358346 Reactome:R-MMU-5358351 Reactome:R-MMU-5607761 Reactome:R-MMU-5607764 Reactome:R-MMU-5610780 Reactome:R-MMU-5610783 Reactome:R-MMU-5610785 Reactome:R-MMU-5610787 Reactome:R-MMU-5621481 Reactome:R-MMU-5632684 Reactome:R-MMU-5654687 Reactome:R-MMU-5654693 Reactome:R-MMU-5654696 Reactome:R-MMU-5654700 Reactome:R-MMU-5654706 Reactome:R-MMU-5654708 Reactome:R-MMU-5654712 Reactome:R-MMU-5654716 Reactome:R-MMU-5654736 Reactome:R-MMU-5654738 Reactome:R-MMU-5654741 Reactome:R-MMU-5654743 Reactome:R-MMU-5658442 Reactome:R-MMU-5668541 Reactome:R-MMU-5673001 Reactome:R-MMU-5676590 Reactome:R-MMU-5683057 Reactome:R-MMU-5684996 Reactome:R-MMU-5687128 Reactome:R-MMU-68827 Reactome:R-MMU-68867 Reactome:R-MMU-68874 Reactome:R-MMU-68882 Reactome:R-MMU-68886 Reactome:R-MMU-68949 Reactome:R-MMU-69002 Reactome:R-MMU-69017 Reactome:R-MMU-69052 Reactome:R-MMU-69202 Reactome:R-MMU-69206 Reactome:R-MMU-69229 Reactome:R-MMU-69239 Reactome:R-MMU-69242 Reactome:R-MMU-69278 Reactome:R-MMU-69300 Reactome:R-MMU-69304 Reactome:R-MMU-69306 Reactome:R-MMU-69541 Reactome:R-MMU-69563 Reactome:R-MMU-69580 Reactome:R-MMU-69601 Reactome:R-MMU-69610 Reactome:R-MMU-69613 Reactome:R-MMU-69615 Reactome:R-MMU-69620 Reactome:R-MMU-69656 Reactome:R-MMU-71291 Reactome:R-MMU-74160 Reactome:R-MMU-74751 Reactome:R-MMU-74752 Reactome:R-MMU-75815 Reactome:R-MMU-881907 Reactome:R-MMU-912526 Reactome:R-MMU-983168 Reactome:R-MMU-983169 Reactome:R-MMU-983705 UniParc:UPI0000020ED6
definition	note : transcript_id=ENSMUST00000107237 protein_id : ENSMUSP00000102857 translation : MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATPGTEDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQGTEFSQESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGALASQATKDGKNDKKEEEKK

name	Psmd4 (ENSMUSG00000005625) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS71287.1 RefSeq_peptide:NP_001268946 RefSeq_mRNA:NM_001282017.1 Vega_transcript:OTTMUST00000047018 Vega_transcript:Psmd4-001 Uniprot/SPTREMBL:Q3ULG4 UCSC:uc008qhs.2 Fantom:I1C0010E10 EMBL:AK145524 GO:GO:0000502 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005737 GO:GO:0008134 GO:GO:0042802 GO:GO:0044822 MGI_trans_name:Psmd4-001 Vega_translation:188029 Vega_translation:OTTMUSP00000021245 protein_id:BAE26484.1 OTTP:OTTMUSP00000021245 OTTT:OTTMUST00000047018 UniParc:UPI000002B1B5
definition	note : transcript_id=ENSMUST00000071664 protein_id : ENSMUSP00000071589 translation : MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATPGTEGERDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQGTEFSQESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGALASQATKDGKNDKKEEEKK

name	Psmd4 (ENSMUSG00000005625) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000055685 Vega_transcript:Psmd4-008 Uniprot/SPTREMBL:F7AI87 UCSC:uc008qhs.2 EMBL:AC087062 GO:GO:0000502 GO:GO:0005654 GO:GO:0005737 GO:GO:0006511 GO:GO:0008540 GO:GO:0042802 GO:GO:0044822 MGI_trans_name:Psmd4-008 Vega_translation:188030 Vega_translation:OTTMUSP00000026699 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000026699 OTTT:OTTMUST00000055685 UniParc:UPI00015AA1B0
definition	note : transcript_id=ENSMUST00000140348 protein_id : ENSMUSP00000114545 translation : GSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEALRVSMEEQRQRQEEEARRAAAASAAEAGIATPGTEGERDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQGTEFSQESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGALASQATKDGKNDKKEEEKK

name	Psmd4 (ENSMUSG00000005625) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:O35226 Vega_transcript:OTTMUST00000047021 Vega_transcript:Psmd4-004 UCSC:uc008qht.2 EMBL:AB029090 EMBL:AB029142 EMBL:AB029143 EMBL:AB029144 EMBL:AB029145 EMBL:AB029146 EMBL:AF013099 EMBL:AF175574 EMBL:BC009005 GO:GO:0000502 GO:GO:0005654 GO:GO:0005737 GO:GO:0006511 GO:GO:0008540 GO:GO:0022624 GO:GO:0042802 GO:GO:0044822 MGI_trans_name:Psmd4-004 Vega_translation:188031 Vega_translation:OTTMUSP00000041833 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0008150 goslim_goa:GO:0009056 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAC53547.1 protein_id:AAG09199.1 protein_id:AAH09005.1 protein_id:BAA97572.1 protein_id:BAA97573.1 protein_id:BAA97574.1 protein_id:BAA97575.1 protein_id:BAA97576.1 protein_id:BAA97577.1 OTTP:OTTMUSP00000041833 OTTT:OTTMUST00000047021 Reactome:R-MMU-109581 Reactome:R-MMU-112399 Reactome:R-MMU-112412 Reactome:R-MMU-1168372 Reactome:R-MMU-1169091 Reactome:R-MMU-1227986 Reactome:R-MMU-1236394 Reactome:R-MMU-1236974 Reactome:R-MMU-1236975 Reactome:R-MMU-1236978 Reactome:R-MMU-1250196 Reactome:R-MMU-1250347 Reactome:R-MMU-1266738 Reactome:R-MMU-1280215 Reactome:R-MMU-1280218 Reactome:R-MMU-1430728 Reactome:R-MMU-1433557 Reactome:R-MMU-162582 Reactome:R-MMU-1640170 Reactome:R-MMU-166520 Reactome:R-MMU-167044 Reactome:R-MMU-168249 Reactome:R-MMU-168256 Reactome:R-MMU-169893 Reactome:R-MMU-169911 Reactome:R-MMU-170968 Reactome:R-MMU-170984 Reactome:R-MMU-174084 Reactome:R-MMU-174113 Reactome:R-MMU-174143 Reactome:R-MMU-174154 Reactome:R-MMU-174178 Reactome:R-MMU-174184 Reactome:R-MMU-176408 Reactome:R-MMU-176409 Reactome:R-MMU-176814 Reactome:R-MMU-177929 Reactome:R-MMU-179419 Reactome:R-MMU-179812 Reactome:R-MMU-180336 Reactome:R-MMU-186763 Reactome:R-MMU-186797 Reactome:R-MMU-187037 Reactome:R-MMU-187577 Reactome:R-MMU-187687 Reactome:R-MMU-187706 Reactome:R-MMU-190236 Reactome:R-MMU-194138 Reactome:R-MMU-195253 Reactome:R-MMU-195721 Reactome:R-MMU-1963640 Reactome:R-MMU-201681 Reactome:R-MMU-211733 Reactome:R-MMU-2172127 Reactome:R-MMU-2404192 Reactome:R-MMU-2424491 Reactome:R-MMU-2428924 Reactome:R-MMU-2428928 Reactome:R-MMU-2454202 Reactome:R-MMU-2467813 Reactome:R-MMU-2555396 Reactome:R-MMU-2586552 Reactome:R-MMU-2871796 Reactome:R-MMU-2871837 Reactome:R-MMU-349425 Reactome:R-MMU-350562 Reactome:R-MMU-372790 Reactome:R-MMU-375165 Reactome:R-MMU-3858494 Reactome:R-MMU-4086400 Reactome:R-MMU-422475 Reactome:R-MMU-4420097 Reactome:R-MMU-449147 Reactome:R-MMU-450408 Reactome:R-MMU-450531 Reactome:R-MMU-451927 Reactome:R-MMU-453276 Reactome:R-MMU-453279 Reactome:R-MMU-4608870 Reactome:R-MMU-4641257 Reactome:R-MMU-4641258 Reactome:R-MMU-512988 Reactome:R-MMU-5218921 Reactome:R-MMU-5357801 Reactome:R-MMU-5358346 Reactome:R-MMU-5358351 Reactome:R-MMU-5607761 Reactome:R-MMU-5607764 Reactome:R-MMU-5610780 Reactome:R-MMU-5610783 Reactome:R-MMU-5610785 Reactome:R-MMU-5610787 Reactome:R-MMU-5621481 Reactome:R-MMU-5632684 Reactome:R-MMU-5654687 Reactome:R-MMU-5654693 Reactome:R-MMU-5654696 Reactome:R-MMU-5654700 Reactome:R-MMU-5654706 Reactome:R-MMU-5654708 Reactome:R-MMU-5654712 Reactome:R-MMU-5654716 Reactome:R-MMU-5654736 Reactome:R-MMU-5654738 Reactome:R-MMU-5654741 Reactome:R-MMU-5654743 Reactome:R-MMU-5658442 Reactome:R-MMU-5668541 Reactome:R-MMU-5673001 Reactome:R-MMU-5676590 Reactome:R-MMU-5683057 Reactome:R-MMU-5684996 Reactome:R-MMU-5687128 Reactome:R-MMU-68827 Reactome:R-MMU-68867 Reactome:R-MMU-68874 Reactome:R-MMU-68882 Reactome:R-MMU-68886 Reactome:R-MMU-68949 Reactome:R-MMU-69002 Reactome:R-MMU-69017 Reactome:R-MMU-69052 Reactome:R-MMU-69202 Reactome:R-MMU-69206 Reactome:R-MMU-69229 Reactome:R-MMU-69239 Reactome:R-MMU-69242 Reactome:R-MMU-69278 Reactome:R-MMU-69300 Reactome:R-MMU-69304 Reactome:R-MMU-69306 Reactome:R-MMU-69541 Reactome:R-MMU-69563 Reactome:R-MMU-69580 Reactome:R-MMU-69601 Reactome:R-MMU-69610 Reactome:R-MMU-69613 Reactome:R-MMU-69615 Reactome:R-MMU-69620 Reactome:R-MMU-69656 Reactome:R-MMU-71291 Reactome:R-MMU-74160 Reactome:R-MMU-74751 Reactome:R-MMU-74752 Reactome:R-MMU-75815 Reactome:R-MMU-881907 Reactome:R-MMU-912526 Reactome:R-MMU-983168 Reactome:R-MMU-983169 Reactome:R-MMU-983705 UniParc:UPI000002B1B6
definition	note : transcript_id=ENSMUST00000117355 protein_id : ENSMUSP00000113554 translation : MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATPGTEGERDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQGTEFSQESADMDASSAMDTSDPVKVRASSEALTQPSLTSPAFRSLSFWDQGLSSLAFHKKGLGATEGNT

name
type	STS
link
xref	UniSTS_NUM:161910 UniSTS:RH125088
definition	note : map_weight=1 standard_name : RH125088

name
type	misc_feature
link
xref
definition	note : contig AC087062.25 22953..224451(1)

name	Psmd4 (ENSMUSG00000005625)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000047020 Vega_transcript:OTTMUST00000047020 MGI_trans_name:Psmd4-003 OTTT:OTTMUST00000047020
definition	note : retained_intron note : transcript_id=ENSMUST00000140280

name	Psmd4 (ENSMUSG00000005625)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000047022 Vega_transcript:OTTMUST00000047022 MGI_trans_name:Psmd4-005 OTTT:OTTMUST00000047022
definition	note : retained_intron note : transcript_id=ENSMUST00000136868

name	Psmd4 (ENSMUSG00000005625)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000055683 Vega_transcript:OTTMUST00000055683 MGI_trans_name:Psmd4-006 OTTT:OTTMUST00000055683
definition	note : retained_intron note : transcript_id=ENSMUST00000147960

name	Psmd4 (ENSMUSG00000005625)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000055684 Vega_transcript:OTTMUST00000055684 MGI_trans_name:Psmd4-007 OTTT:OTTMUST00000055684
definition	note : processed_transcript note : transcript_id=ENSMUST00000143688

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Psmd4 (ENSMUSG00000005625)
Transcript ID	ENSMUST00000071664

Reports
substitution
cSNPs	0
Insertion	12
Deletion	7
SNPs	+1kb 95042570(c.-37C>G), 95042696(c.-163C>T), 95042698(c.-165A>T), 95043023(c.-490G>C), 95043054(c.-521T>A), 95043928(c.-1395G>A), 95043958(c.-1425G>A), 95044783(c.-2250T>C), 95044941(c.-2408C>T), 95045262(c.-2729A>T), 95045263(c.-2730C>A), 95045423(c.-2890C>T), 95045909(c.-3376G>T), 95046138(c.-3605C>T), 95046342(c.-3809C>T), 95046366(c.-3833G>A), 95046660(c.-4127T>C), 95046744(c.-4211G>A), 95046785(c.-4252G>A), 95047199(c.-4666T>G), 95047363(c.-4830C>T), 5'UTR 95042552(c.-19G>A), CDS 3'UTR 95032702(c.112C>T), INTRON 95033285(c.969+197C>G), 95033287(c.969+195T>A), 95033390(c.969+92T>A), 95033405(c.969+77A>G), 95033602(c.904+31A>G), 95034343(c.654+223T>C), 95036077(c.168-153G>A), 95036767(c.27-22T>C), 95036998(c.27-253C>T), 95038009(c.27-1264C>G), 95038255(c.27-1510C>A), 95038584(c.27-1839A>G), 95038951(c.27-2206C>T), 95039130(c.27-2385A>G), 95041013(c.26+1495A>G), 95041072(c.26+1436A>T), 95041776(c.26+732A>C), 95042112(c.26+396C>T), -1kb 95027794(c.5020T>C), 95028220(c.4594T>A), 95028355(c.4459C>G), 95028473(c.4341A>G), 95028528(c.4286A>C), 95028704(c.4110G>T), 95028943(c.3871T>C), 95029179(c.3635T>A), 95029187(c.3627C>T), 95029876(c.2938C>T), 95030753(c.2061C>T), 95030789(c.2025T>C), 95031044(c.1770T>C), 95031232(c.1582A>G), 95031478(c.1336A>G), 95031511(c.1303G>A), 95031521(c.1293G>C), 95032595(c.*219T>C),
Insertions	+1kb 95044049 (c.-1517_-1516insCT), 95044873 (c.-2341_-2340insTT), 95045893 (c.-3361_-3360insA), 95047035 (c.-4503_-4502insGTTT), 5'UTR CDS 3'UTR INTRON 95036364 (c.167+240_167+241insT), 95036380 (c.167+224_167+225insTT), 95042479 (c.26+28dupG), -1kb 95027775 (c.5038_5039insGGTAAA), 95028473 (c.4340_4341insTGTGTGTGTGT), 95030016 (c.2797_2798insG), 95030201 (c.2612_2613insTGTTTG), 95031638 (c.1175_1176insA),
Deletions	+1kb 95043317 (c.-791_-785delGTTTGTT), 5'UTR CDS 3'UTR INTRON 95034235 (c.655-211_655-210delTT), 95037362 (c.27-620_27-618delGTT), 95040145 (c.26+2356_26+2362delCAAAAAA), 95041234 (c.26+1265_26+1273delTTTTTTTTT), -1kb 95028970 (c.3836_3843delATGTGTGT), 95029579 (c.3231_3234delTTTT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000071664)	MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA ASAAEAGIATPGTEGERDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQG TEFSQESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGA LASQATKDGKNDKKEEEKK*
MSMv4 transcript	MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA ASAAEAGIATPGTEGERDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQG TEFSQESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQSVLENLPGVDPNNAAIRSVMGA LASQATKDGKNDKKEEEKK*
homology	100.00 (380 / 380)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Psmd4 (ENSMUSG00000005625)
Transcript ID	ENSMUST00000071664


..........GCTATCCTTCGTTCCTTGGGTGATTACATGGTGTTTACTGCGGGCTGGGG
AAATGACTCAGTGCTTATGAGAGAGCGCTTACTGCTCTTCCTAGAGGACCAGAGTTCGGT
TCCCAGAACTCAAGACAGGCAGCTCACAGCTGCCTGGAACTCCAGTTCCGGATTTGATAT
TCTCTTCCAGCCTCTGCAGGGCCTGAATACACACACAAACGCTTAAAAATTTTTTTTGGT
TTGTTTTTTTTTTTTTAATTGGTCAAAACTTTTCTGGATTCCTTCATCCTGTCAGACTCA
ATACTGGAGTTAGGAATTGCATAGATTTTTTTTTTTTTTTTTTTTGGTAGGCAGTAGATA
GGTAAATCGAATTTGAGGATACAAGTGTTTGTAGCAGTTGCATAAACACAGTGCAATGGG
AAACAGGAAGTTAAAATGTGGTTAACGATGCTGACACACTTTTTAAGTGATTATGCTTGG
ACTGACATATCCACAGTAGTGTATGCACACATGAGTGTCTGTTATGTGTTCGAGGCAGTC
TCACTACGTAGTAGCTATGTTGCCCACGTTGGCCTGGAAATTGCAGTTCAGATCTTAGCA
TGAGTGTGCCCCTTGTAAACAGCACTGGGAGGTGAAGCAATAGAGTTTATTAGCCTGAGC
TCCACAGCGAATTGCTGTCATCCTTTTTCAAACCGTAACAACAAAAACAAATCAAAAACC
CAAATATACAAAAGAAAGAGAGCAGAAGAGGGGGTAAATTACAGCTCTCCTGCCTCACAC
TGGAGTGTTGCTGCCAGGCGAGTGCAGAGAGCTTACAGCTGTTCCGGAAGCTGCTGCGAA
GGTAGCCAACTCTATTGGATAACCTATCTTTCCATTTCTGTGGCGCCTACAAGTCCCAGA
ACACACCGCGGGGCGCGGAGGCGGGGCAGCATGAAGACTGAGTTCTTTGATTGGTGATGA
GCACCAGGCCAATCGGAGGTGCTGTTGTTTGTGAGTCCCGGAGCCGGTCC
ACAGAGGGAAGGAGGCAAGATGGTGTTGGAGAGCACTATGGTTTG
GTGAGGAGCTTCGGACGTGGCTGGG..........GTGCCCTTTTCTCCTTATCTGACAG
TGTGGACAACAGTGAGTACATGCGGAACGGAGACTTCCTTCCCACCCGGCTGCAGGCCCAGCAGGATGCCGTCAACATTGTATGTCACTCAAAGACCCGAAGCAACCCTGAGAATAACGTGGGCCTGATCACACTGGCCAA
GTACGTGGGACACAGTGGGGCTGTG..........ACTAAAATTCTTTGCTCACATTTAG
TGACTGTGAGGTGCTGACCACACTCACCCCGGACACTGGCCGTATCCTCTCCAAGCTCCACACTGTCCAACCCAAAGGCAAGATCACCTTCTGCACTGGCATCCGCGTGGCCCAC
GTGAGTCCTGTTGGCTCCCTGCTAT..........ACGGGAACTTCTTTTCCCTTCCAAG
TTGGCTCTGAAGCACCGGCAGGGCAAGAATCACAAGATGCGCATCATCGCCTTTGTCGGTAGCCCTGTGGAGGACAACGAGAAGGAT
GTGAGTCCACAGACAGCCTGCCAGG..........TTGATTTTTCTCCCTTTCTTCATAG
CTGGTGAAACTAGCTAAACGCCTTAAGAAAGAAAAAGTGAATGTTGACATCATTAATTTTGGGGAAGAG
GTAAGTCAGGGTTGCAGAGCATAGG..........CTGTCTTGTGCTCTCTGCTCTACAG
GAGGTGAACACAGAGAAGCTGACAGCCTTTGTGAACACACTGAATGGCAAGGATGGAACTGGGTCCCATCTAGTGACAGTGCCTCCTGGACCTAGCTTGGCTGATGCTCTCATCAGTTCTCCTATTCTGGCTGGTGAAGGCGGTGCCATGCTGGGTCTTGGTGCCAGTGACTTTGAGTTTGGAGTAGATCCCAGTGCTGATCCTGAATTGGCCCTG
GTAAGCAAATGTTGACCCTGGGGTT..........GCCCCCTTGTCTTGCTCTTTACCAG
GCCCTTCGAGTCTCTATGGAAGAGCAGCGGCAGCGGCAGGAGGAAGAGGCACGGCGGGCCGCTGCGGCCTCTGCAGCTGAGGCTGGAATTGCTACACCTGGGACTGAAGGTGAAAGAG
GTGGATTCTGAACTCCTGGGCCTGA..........ACCCTGGCCTTCTGTCCTTGCCCAG
ACTCGGATGACGCCCTACTGAAGATGACCATCAACCAGCAGGAGTTTGGCCGTCCTGGGCTTCCAGACCTAAGCAGCATGACTGAGGAAGAGCAGATCGCCTACGCCATGCAGATGTCCCTGCAGGGAACAG
GTGGGCCATGGCTTGGGTGGCAGGG..........CGGGCTGCTGCTCTCCTTTCCTCAG
AGTTTAGCCAAGAATCGGCTGACATGGATGCCAGCTCAGCCATGGACACATCTGATCCAGTCAAG
GTGAGGGCCAGCAGTGAGGCTCTGA..........CGCTGCTCCGTGTGCCTTTTTTCAG
GAGGAGGATGACTATGACGTCATGCAGGACCCGGAGTTCCTTCAGAGCGTCCTAGAGAACCTTCCAGGTGTGGATCCCAACAATGCAGCCATTCGAAGTGTCATGGGGGCTCTGGCCTCCCAGGCCACCAAGGATGGCAAGAATGACAAGAAAGAGGAAGAGAAGAAGTGAGACCGGAGGGAGGGGTAGCTGTGTCTGCCCGGGGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTGGCAAGTTTTCTCCTTT
TGCTTCAAATAGTGATAGCTTTGCACACAGTGGAGGAGTGGGCCTGAAGGAATGTCCTTA
CCTTCTGCTCTGCAGATGGCTGCTGCCTGTCATCTCCATCTCTGACAGTCCCTTGGGCTT
TTTCTTTTTCATTAAGAGAATCTTTACACCGGGCAGTGGTGGCGCACGCCTTTAATCCCA
GCACTTGGGAGGCAGAGGCTCGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGT
GAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGGAAAAAAAAAAGAGAGA
GAGAGGAGAGAAGCTTTGCTGAGGACCCACTCTTTTTTTTTTTTTTTTTTTTTAAAGATT
TATTTATTTATTACATGTAATGTACACTGTAGCTATCCTCAGATACTCCAGAAGAGGGAG
TCAGATCTCATTGGTTGTAAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCG
GAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGAGGACCCACTCTT
AAATCCTAAGGCCACTGAGATGAATCGAGGACAGCACCAGGGTCATGGTCTAGGGACAAG
AACAGCCCATGTCTGATTCAAAGAATATGTATGTACGTATGTGTGGGTGTGTATGTATGT
ATGTATGTGTGTATGTATGTATGTATGTATTTTTGAGACAGGGTCTCACTATGTAGCCTA
GACTGATCTATAATTATTATGTATACTAAATTGACCTCAAACTTACAGAGACCCATTAGC
CTCTGCCTCTGTATTGCTGGGAGTATGAACCACCATGCTGGCTCAAAAGAGAATTATGAG
GGATCTGGCAAGATGGCTCAGTGGAAAAAGGCACTTATCATGAAAAATCCTAAGAATATT
TTAGAAATTTTTATGGTGGTACACTCCTTTAATCCCAGCACTTGGGAGGTAGAGGCAGGT
GGGTCTCTGTCTGGGTCAAGGCAAGCTTGGTCTACAGAGC..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GCTATCCTTCGTTCCTTGGGTGATTACATGGTGTTTACTGCGGGCTGGGG AAATGACTCAGTGCTTATGAGAGAGCGCTTACTGCTCTTCCTAGAGGACCAGAGTTCGGT TCCCAGAACTCAAGACAGGCAGCTCACAGCTGCCTGGAACTCCAGTTCCGGATTTGATAT TCTCTTCCAGCCTCTGCAGGGCCTGAATACACACACAAACGCTTAAAAATTTTTTTTGGT TTGTTTTTTTTTTTTTAATTGGTCAAAACTTTTCTGGATTCCTTCATCCTGTCAGACTCA ATACTGGAGTTAGGAATTGCATAGATTTTTTTTTTTTTTTTTTTTGGTAGGCAGTAGATA GGTAAATCGAATTTGAGGATACAAGTGTTTGTAGCAGTTGCATAAACACAGTGCAATGGG AAACAGGAAGTTAAAATGTGGTTAACGATGCTGACACACTTTTTAAGTGATTATGCTTGG ACTGACATATCCACAGTAGTGTATGCACACATGAGTGTCTGTTATGTGTTCGAGGCAGTC TCACTACGTAGTAGCTATGTTGCCCACGTTGGCCTGGAAATTGCAGTTCAGATCTTAGCA TGAGTGTGCCCCTTGTAAACAGCACTGGGAGGTGAAGCAATAGAGTTTATTAGCCTGAGC TCCACAGCGAATTGCTGTCATCCTTTTTCAAACCGTAACAACAAAAACAAATCAAAAACC CAAATATACAAAAGAAAGAGAGCAGAAGAGGGGGTAAATTACAGCTCTCCTGCCTCACAC TGGAGTGTTGCTGCCAGGCGAGTGCAGAGAGCTTACAGCTGTTCCGGAAGCTGCTGCGAA GGTAGCCAACTCTATTGGATAACCTATCTTTCCATTTCTGTGGCGCCTACAAGTCCCAGA ACACACCGCGGGGCGCGGAGGCGGGGCAGCATGAAGACTGAGTTCTTTGATTGGTGATGA GCACCAGGCCAATCGGAGGTGCTGTTGTTTGTGAGTCCCGGAGCCGGTCC
1	EXON 1	95,042,508	95,042,552	-	2	45	ACAGAGGGAAGGAGGCAAGATGGTGTTGGAGAGCACTATGGTTTG
	INTRON 1 - 2	95,036,746	95,042,507			5,762	GTGAGGAGCTTCGGACGTGGCTGGG..........GTGCCCTTTTCTCCTTATCTGACAG
2	EXON 2	95,036,605	95,036,745	2	2	141	TGTGGACAACAGTGAGTACATGCGGAACGGAGACTTCCTTCCCACCCGGCTGCAGGCCCA GCAGGATGCCGTCAACATTGTATGTCACTCAAAGACCCGAAGCAACCCTGAGAATAACGT GGGCCTGATCACACTGGCCAA
	INTRON 2 - 3	95,035,925	95,036,604			680	GTACGTGGGACACAGTGGGGCTGTG..........ACTAAAATTCTTTGCTCACATTTAG
3	EXON 3	95,035,810	95,035,924	2	0	115	TGACTGTGAGGTGCTGACCACACTCACCCCGGACACTGGCCGTATCCTCTCCAAGCTCCA CACTGTCCAACCCAAAGGCAAGATCACCTTCTGCACTGGCATCCGCGTGGCCCAC
	INTRON 3 - 4	95,035,325	95,035,809			485	GTGAGTCCTGTTGGCTCCCTGCTAT..........ACGGGAACTTCTTTTCCCTTCCAAG
4	EXON 4	95,035,238	95,035,324	0	0	87	TTGGCTCTGAAGCACCGGCAGGGCAAGAATCACAAGATGCGCATCATCGCCTTTGTCGGT AGCCCTGTGGAGGACAACGAGAAGGAT
	INTRON 4 - 5	95,035,011	95,035,237			227	GTGAGTCCACAGACAGCCTGCCAGG..........TTGATTTTTCTCCCTTTCTTCATAG
5	EXON 5	95,034,942	95,035,010	0	0	69	CTGGTGAAACTAGCTAAACGCCTTAAGAAAGAAAAAGTGAATGTTGACATCATTAATTTT GGGGAAGAG
	INTRON 5 - 6	95,034,782	95,034,941			160	GTAAGTCAGGGTTGCAGAGCATAGG..........CTGTCTTGTGCTCTCTGCTCTACAG
6	EXON 6	95,034,566	95,034,781	0	0	216	GAGGTGAACACAGAGAAGCTGACAGCCTTTGTGAACACACTGAATGGCAAGGATGGAACT GGGTCCCATCTAGTGACAGTGCCTCCTGGACCTAGCTTGGCTGATGCTCTCATCAGTTCT CCTATTCTGGCTGGTGAAGGCGGTGCCATGCTGGGTCTTGGTGCCAGTGACTTTGAGTTT GGAGTAGATCCCAGTGCTGATCCTGAATTGGCCCTG
	INTRON 6 - 7	95,034,027	95,034,565			539	GTAAGCAAATGTTGACCCTGGGGTT..........GCCCCCTTGTCTTGCTCTTTACCAG
7	EXON 7	95,033,909	95,034,026	0	1	118	GCCCTTCGAGTCTCTATGGAAGAGCAGCGGCAGCGGCAGGAGGAAGAGGCACGGCGGGCC GCTGCGGCCTCTGCAGCTGAGGCTGGAATTGCTACACCTGGGACTGAAGGTGAAAGAG
	INTRON 7 - 8	95,033,765	95,033,908			144	GTGGATTCTGAACTCCTGGGCCTGA..........ACCCTGGCCTTCTGTCCTTGCCCAG
8	EXON 8	95,033,633	95,033,764	1	1	132	ACTCGGATGACGCCCTACTGAAGATGACCATCAACCAGCAGGAGTTTGGCCGTCCTGGGC TTCCAGACCTAAGCAGCATGACTGAGGAAGAGCAGATCGCCTACGCCATGCAGATGTCCC TGCAGGGAACAG
	INTRON 8 - 9	95,033,547	95,033,632			86	GTGGGCCATGGCTTGGGTGGCAGGG..........CGGGCTGCTGCTCTCCTTTCCTCAG
9	EXON 9	95,033,482	95,033,546	1	0	65	AGTTTAGCCAAGAATCGGCTGACATGGATGCCAGCTCAGCCATGGACACATCTGATCCAG TCAAG
	INTRON 9 - 10	95,032,985	95,033,481			497	GTGAGGGCCAGCAGTGAGGCTCTGA..........CGCTGCTCCGTGTGCCTTTTTTCAG
10	EXON 10	95,032,697	95,032,984	0	-	288	GAGGAGGATGACTATGACGTCATGCAGGACCCGGAGTTCCTTCAGAGCGTCCTAGAGAAC CTTCCAGGTGTGGATCCCAACAATGCAGCCATTCGAAGTGTCATGGGGGCTCTGGCCTCC CAGGCCACCAAGGATGGCAAGAATGACAAGAAAGAGGAAGAGAAGAAGTGAGACCGGAGG GAGGGGTAGCTGTGTCTGCCCGGGGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGT GCTCTGCTGCCTTTATGATGGAATAAAGCTTGGCAAGTTTTCTCCTTT
	3' upstream sequence						TGCTTCAAATAGTGATAGCTTTGCACACAGTGGAGGAGTGGGCCTGAAGGAATGTCCTTA CCTTCTGCTCTGCAGATGGCTGCTGCCTGTCATCTCCATCTCTGACAGTCCCTTGGGCTT TTTCTTTTTCATTAAGAGAATCTTTACACCGGGCAGTGGTGGCGCACGCCTTTAATCCCA GCACTTGGGAGGCAGAGGCTCGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGT GAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGGAAAAAAAAAAGAGAGA GAGAGGAGAGAAGCTTTGCTGAGGACCCACTCTTTTTTTTTTTTTTTTTTTTTAAAGATT TATTTATTTATTACATGTAATGTACACTGTAGCTATCCTCAGATACTCCAGAAGAGGGAG TCAGATCTCATTGGTTGTAAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCG GAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGAGGACCCACTCTT AAATCCTAAGGCCACTGAGATGAATCGAGGACAGCACCAGGGTCATGGTCTAGGGACAAG AACAGCCCATGTCTGATTCAAAGAATATGTATGTACGTATGTGTGGGTGTGTATGTATGT ATGTATGTGTGTATGTATGTATGTATGTATTTTTGAGACAGGGTCTCACTATGTAGCCTA GACTGATCTATAATTATTATGTATACTAAATTGACCTCAAACTTACAGAGACCCATTAGC CTCTGCCTCTGTATTGCTGGGAGTATGAACCACCATGCTGGCTCAAAAGAGAATTATGAG GGATCTGGCAAGATGGCTCAGTGGAAAAAGGCACTTATCATGAAAAATCCTAAGAATATT TTAGAAATTTTTATGGTGGTACACTCCTTTAATCCCAGCACTTGGGAGGTAGAGGCAGGT GGGTCTCTGTCTGGGTCAAGGCAAGCTTGGTCTACAGAGC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Psmd4 (ENSMUSG00000005625)
Transcript ID	ENSMUST00000071664

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 380 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information