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Target CDS Information

Gene Symbol (Gene ID) Dtnbp1 (ENSMUSG00000057531)
Cross Reference
CCDS CCDS36647.1
EMBL AJ404859, AK010924, AK159656, ...show all
Fantom 2510008A14, I420027H10
GO GO:0001956, GO:0005515, GO:0005515, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0005575, ...show all
MGI_trans_name Dtnbp1-201
protein_id AAH18350.1, AAH48682.1, AAH58574.1, ...show all
Reactome R-MMU-199991, R-MMU-199992, R-MMU-421837, ...show all
RefSeq_mRNA NM_025772.4
RefSeq_peptide NP_080048
UCSC uc007qgx.1
UniParc UPI000002945C
Uniprot/SWISSPROT Q91WZ8
Definition protein_id:ENSMUSP00000072170
translation:
MLETLRERLLSVQQDFTSGLKTLSDKSREAKVKGKPRTAPRLPKYSAGLELLSRYEDAWA
ALHRRAKECADAGELVDSEVVMLSAHWEKKRTSLNELQGQLQQLPALLQDLESLMASLAH
LETSFEEVENHLLHLEDLCGQCELERHKQAQAQHLESYKKSKRKELEAFKAELDTEHTQK
ALEMEHTQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPMGSMSSMEVNVDVLEQ
MDLMDISDQEALDVFLNSGGEDNIVMSPGVEMESNPNQNEMSLQIPSPSESASQPPASPS
ACTDLDTADAPLIQSDEEEVQVDTALVTLHTDRKSTPGVSDDSDQCDSTQDI

Chromosome 13
Length
Position(start - end)
79,764
44,922,207 - 45,001,972
Orient to Chromosome minus
Link Location : (13:44922207-45001972)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dtnbp1 (ENSMUSG00000057531)
Transcript ID ENSMUST00000072329
Reports
substitution
cSNPs6
Insertion66
Deletion71
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num2
synonymous substitutions 44923213 (p.Gln249Gln), 44931000 (p.Arg221Arg), 44992033 (p.Leu49Leu), 44993729 (p.Thr22Thr),
non-synonymous substitutions 44970101 (p.Glu145Lys), 44993695 (p.Gly34Ser),
B6 transcript
(ENSMUST00000072329)
MLETLRERLLSVQQDFTSGLKTLSDKSREAKVKGKPRTAPRLPKYSAGLELLSRYEDAWA
ALHRRAKECADAGELVDSEVVMLSAHWEKKRTSLNELQGQLQQLPALLQDLESLMASLAH
LETSFEEVENHLLHLEDLCGQCELERHKQAQAQHLESYKKSKRKELEAFKAELDTEHTQK
ALEMEHTQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPMGSMSSMEVNVDVLEQ
MDLMDISDQEALDVFLNSGGEDNIVMSPGVEMESNPNQNEMSLQIPSPSESASQPPASPS
ACTDLDTADAPLIQSDEEEVQVDTALVTLHTDRKSTPGVSDDSDQCDSTQDI*
MSMv4 transcript
MLETLRERLLSVQQDFTSGLKTLSDKSREAKVKSKPRTAPRLPKYSAGLELLSRYEDAWA
ALHRRAKECADAGELVDSEVVMLSAHWEKKRTSLNELQGQLQQLPALLQDLESLMASLAH
LETSFEEVENHLLHLEDLCGQCELKRHKQAQAQHLESYKKSKRKELEAFKAELDTEHTQK
ALEMEHTQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPMGSMSSMEVNVDVLEQ
MDLMDISDQEALDVFLNSGGEDNIVMSPGVEMESNPNQNEMSLQIPSPSESASQPPASPS
ACTDLDTADAPLIQSDEEEVQVDTALVTLHTDRKSTPGVSDDSDQCDSTQDI*
homology99.43 (353 / 353)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dtnbp1 (ENSMUSG00000057531)
Transcript ID ENSMUST00000072329
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCTCCCGATACTGAACCTCTTATAACCTTGACCATCTTGTTATTTAAAAA
AGAGGGTGTCACCCTGGTAGCCAGTCTTTAAGCAAAATGAATCCTCATTTTGGAAGTCTG
CACTCAAGGAAAAAAAAAAGCATGACTAAATATCCAACTTCCTAGCTCAGTAGTCCTCTC
TCCTGAGAAGAAAAGGCTCGGAGTGTTTTAATCCCCTTTTCCACATGGAAGGGCTGGGGA
TGTCACCCACTGCCAGAGTGCTTGTCTAGTATGCCACAAAGGATGCTTGAGATGTCCCGG
GGACAACGCGGTGAAACAACTGAAAGGAAAGGAAGGGGGCAAGCAAAAACAGAGGAGTAC
CCTACAATAGATGACGGCTAGACTAGCCCAGGGAAAGTGCATAGAGAGGAGGAGGAGTCT
GTGCACATAGTTTTGGGCCAGAAGGGATGAAAGGAAGAAAAAAGGTGAGCAACTGCTCTG
AGGATAACTGAAAGGTTGAGAAAAGATTGAAGCACAGAATAAAGAGGGTTGGCTCAGTGG
GAGAGCCTTGGTATGCAAGAAACCGAGTTCCACCCCCACAAGGGGGCAGAGGAGGGGAAA
CATGGCTTTGGCAACATGGAGAGATGAAGGGCACAGAAATTTGACGGGGTCAGTCAAAGA
TCTAGAGTGGGCAAAGTAAGGGTTTGGAGACAGGTGATCATCACCGACAAACCCCAATAC
GGAGTACCAAAGCAGTGTTGTTATAGGGAGGCGCAGCCACCCAGGAGATTCCCGCAGCGC
TCTTCCGACCCTAGAAAGCCAACCAACCCTTCAACTAAAGGGCGCAGGGGCCTGAAATCA
TCCTTCCAAGAAGCAGTCATAACCTTGGAGAAGGCCGGCTTCCCGCCCTGTCTGCAGAGC
CGGCGAGCGCGCTCGCGAAGGCCCCGCCCCTCGGCGCCGCGCGAGCCTCCCCTGAGCGCC
GCACTGCGGCTGCGCCGGCCGGGCGCGCGGAGGGGGGCGGGGACGCGGAA
1 EXON 1 45,001,917 45,002,096 - 2 180
GGCGCGGCGGCCGGGGAGGCTGCGGCGGCGGCGGCGCGGTGAAGCGAGAGCCGGCGCGCG
GGGCGAGGGGACGCCCGACGGCGTCCGAGGGCGCGGTGGCGCGAGGCCTGAGGGAGGGGA
CGCGATGCTGGAGACCCTGCGCGAGCGGCTGCTGAGCGTACAGCAGGATTTCACCTCCGG
INTRON 1 - 2 44,993,739 45,001,916 8,178
GTGAGTACGCGGTGGGCGGCCGAAA..........ATATTTTATATTTCTTTCTTTCTAG
2 EXON 2 44,993,685 44,993,738 2 2 54
GCTGAAGACGTTAAGTGATAAGTCAAGAGAAGCAAAAGTGAAAAGCAAACCCAG
INTRON 2 - 3 44,992,070 44,993,684 1,615
GTGAGCCACGCCACGAGCTTTAGTT..........CTCTAATGAACGTTTCTCTTGGCAG
3 EXON 3 44,992,019 44,992,069 2 2 51
GACTGCTCCACGCTTACCGAAGTACTCTGCTGGACTGGAATTACTTAGCAG
INTRON 3 - 4 44,986,096 44,992,018 5,923
GTAATATTTTCCTTCAGAGAAGAGT..........TTTAAATTATTCTTTGCATTTTTAG
4 EXON 4 44,986,035 44,986,095 2 0 61
GTATGAGGATGCGTGGGCTGCACTTCACAGAAGAGCCAAGGAGTGTGCAGACGCTGGCGA
G
INTRON 4 - 5 44,982,874 44,986,034 3,161
GTAGAGTGTGCTGACCTTACCCTTT..........TGAGCCCCGCTGGTCTGTGTTGCAG
5 EXON 5 44,982,741 44,982,873 0 1 133
CTGGTGGACAGCGAGGTGGTCATGCTGTCTGCCCACTGGGAGAAGAAGAGGACCAGCCTG
AACGAGCTGCAGGGGCAGCTGCAGCAGCTGCCCGCTCTCCTGCAGGACTTGGAGTCTCTG
ATGGCAAGCCTGG
INTRON 5 - 6 44,970,179 44,982,740 12,562
GTAAGTGTGGCCTGTGTGTGAGAGC..........TTCTCGTTTTTGTGTTTACTTTCAG
6 EXON 6 44,970,046 44,970,178 1 2 133
CTCATTTAGAGACAAGTTTTGAAGAGGTAGAGAACCATTTGCTGCACCTGGAGGACTTGT
GTGGGCAGTGTGAGTTAAAAAGACACAAGCAGGCCCAGGCCCAACACCTGGAGAGCTACA
AGAAAAGTAAGAG
INTRON 6 - 7 44,953,195 44,970,045 16,851
GTGAGTTTAAGACTTGGGCTGCAAC..........AATTTGCTTTTCTCTTTTCTTATAG
7 EXON 7 44,953,172 44,953,194 2 1 23
GAAGGAGCTTGAAGCCTTCAAAG
INTRON 7 - 8 44,931,152 44,953,171 22,020
GTAATTCTCTGTTTAATTCTTCACT..........CACCACTGCACCTATGCTTCCTCAG
8 EXON 8 44,930,996 44,931,151 1 1 156
CTGAACTCGATACAGAGCACACACAGAAGGCCCTGGAAATGGAGCACACCCAGCAACTGA
AGCTGAAGGAGCGGCAGAAGTTCTTCGAGGAAGCCTTCCAGCAGGACATGGAACAGTACC
TGTCCACGGGCTACCTGCAGATCGCAGAGAGACGAG
INTRON 8 - 9 44,923,293 44,930,995 7,703
GTGAGCTGGGGCACTTCCAAGCTGC..........GCAAAAAGTCCATCTCTTTTATCAG
9 EXON 9 44,923,149 44,923,292 1 1 144
AGCCTATGGGCAGCATGTCATCCATGGAAGTGAATGTGGACGTGCTGGAGCAGATGGACC
TGATGGACATCTCAGACCAAGAGGCTCTCGATGTCTTCCTGAACTCCGGCGGAGAGGACA
ACATTGTGATGTCCCCTGGTGTGG
INTRON 9 - 10 44,922,455 44,923,148 694
GTAAGAGTAATGACAACACTAAAGT..........AGGCTTTTTCTACTTTCTTCAACAG
10 EXON 10 44,922,079 44,922,454 1 - 376
AGATGGAATCCAACCCCAATCAGAATGAAATGAGTCTTCAGATTCCAAGTCCCTCAGAAT
CAGCATCCCAGCCACCTGCCTCACCCTCTGCCTGCACTGACCTGGACACTGCTGATGCCC
CCCTCATCCAGTCTGATGAGGAGGAGGTACAGGTGGACACGGCCTTGGTCACATTACACA
CTGACAGAAAGTCCACCCCAGGTGTCAGTGATGACAGTGACCAGTGTGACTCAACTCAGG
ACATTTAAGTGACTTGTCAGCTGTGCGCAGAATCCTCCTGCAAAGCCAGGTGCTTAGAGG
TTTTCAATTTTACACACTTGCTAATGGGATGTAAGAACCATTAGAGAAGCGCTCACAATA
AAGCTTATGGAATAAA
3' upstream sequence
CACTGTGCAGCTGGTGAGTATATGGGTCGTATAGAGGCCCCTGCCTTGACAGGTGCTTAG
AGCTGATTGACCAAGAGTTCCTAAAGAAACACAGGTGTGGAGGTCTGCTGGAGAGGGCCT
TGAAGGAAATAGGACCTAGGCCAGGCTATGTGGGCACCGTGCCCTACCATACTGGGAGGC
AGAGTCTGTTAGCATAACCAATAGTGGTCAAATTGGGATCTGAAGAACTTAATTTTACCT
AGCATCAGGTGACAACCTGGGAAAGAAACTTGCTTCCCCAAGGTCCCCAGGGCATGAGCT
AGCCTAGTTGCAGCCCAGAGTGGTGAGCAGTGCCACGGACATGCCTCTGTAGCTCCGCTC
CCTGGCCTAAGAGAGGATGTGTAGCCCCTGCCCCACTGACCAAAGAAAGCCCAATCCCTT
CCCACAAGACAGACAAAATGTCCAAAAAACTTTTTATTATTAAACCTTGTAGTACAAACC
TGAAAAGTAAACAAAGAACTGGCAATAACCACACAGAGCCTCCCGGCAGGAGGGGTGCAG
AGCAGCGCTAATAAATTAAATGTCGAACTGTAAGCCATAGGCGAAAGGTTACCGACAAAG
AGGGGAAAGTCCACAGCAAGGCCATAGAAACTGGACGACCACATTGGAAACACTCGACTG
TTAGGCGATCGTTAAATAGTCCAAAGCAGTTTAGTCTTCTGCAACAACAGCCACCAAAGT
GGATCCTAGGCGTTCCTGGCAGTCACCACTGGCAAGCTCAGTGCAACGTGGGTAGCTATG
GACTGATCCAATTATGAAACAAACAACAGCTTGTGAAAACAGTTTCCCTTTTTTATTCCA
CACATACTGTACACACAGCCGGAGAAGGGCAACAGCTACTCCACTACCACGTTCTGTTGC
TGTTGAGTGATGTAAGCAGCACTTATACATGTCACAAGAGAACCCTGTAAGCATCCAATC
AGCCGATGAAGAAACGGAAACGTAAGGCTTTTCTCCATCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Dtnbp1 (ENSMUSG00000057531)
Transcript ID ENSMUST00000072329
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 353 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information