MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cox5b (ENSMUSG00000061518)

Cross Reference

GO	GO:0004129, GO:0005740, GO:1902600
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Cox5b-003
OTTP	OTTMUSP00000068268
OTTT	OTTMUST00000126143
UCSC	uc007aqw.1
UniParc	UPI00053BD6D7
Uniprot/SPTREMBL	F7C106
Vega_transcript	Cox5b-003, OTTMUST00000126143
Vega_translation	178994, OTTMUSP00000068268

Definition

codon_start:2
protein_id:ENSMUSP00000079944
translation:

XGGVPTDEEQATGLEREIMIAAQKGLSTLVSFRTHTICYLQRQLQAPRKTLI

Chromosome

Length
Position(start - end)

822
36,691,688 - 36,692,511

Orient to Chromosome

plus

Link

Location : (1:36691688-36692511)
/

Detail Map

name	Cox5b (ENSMUSG00000061518)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cox5b note : cytochrome c oxidase subunit Vb [Source:MGI Symbol;Acc:MGI:88475]

name	Cox5b (ENSMUSG00000061518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000193210

name	Cox5b (ENSMUSG00000061518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000195151

name	Cox5b (ENSMUSG00000061518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000081180

name	Cox5b (ENSMUSG00000061518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14886.1 RefSeq_peptide:NP_034072 RefSeq_mRNA:NM_009942.2 RefSeq_peptide_predicted:XP_006543036.1 Vega_transcript:Cox5b-001 Vega_transcript:OTTMUST00000126138 Uniprot/SPTREMBL:Q9D881 UCSC:uc007aqw.1 Fantom:1700000A03 Fantom:2010107H02 Fantom:6620403C02 EMBL:AC084389 EMBL:AK008339 EMBL:AK131673 EMBL:AK135174 EMBL:AL589742 EMBL:BC096048 EMBL:BC099474 EMBL:CH466536 EMBL:CH466561 GO:GO:0004129 GO:GO:0005740 GO:GO:1902600 MGI_trans_name:Cox5b-001 Vega_translation:178992 Vega_translation:OTTMUSP00000068266 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016491 goslim_goa:GO:0022857 goslim_goa:GO:0043226 goslim_goa:GO:0055085 protein_id:AAH96048.1 protein_id:AAH99474.1 protein_id:BAB25614.1 protein_id:BAE20757.1 protein_id:BAE22451.1 protein_id:EDL14503.1 protein_id:EDL32647.1 OTTP:OTTMUSP00000068266 OTTT:OTTMUST00000126138 Reactome:R-MMU-1428517 Reactome:R-MMU-1430728 Reactome:R-MMU-163200 Reactome:R-MMU-212436 Reactome:R-MMU-3700989 Reactome:R-MMU-5628897 Reactome:R-MMU-611105 Reactome:R-MMU-74160 UniParc:UPI0000020DD1
definition	note : transcript_id=ENSMUST00000193210 protein_id : ENSMUSP00000141554 translation : MASRLLRGVGALAAQALRAHGPRGAAVTRSMASGGGVPTDEEQATGLEREIMIAAQKGLDPYNMLPPKAASGTKEDPNLVPSISNKRIVGCICEEDNCTVIWFWLHKGESQRCPNCGTHYKLVPHQMAH

name	Cox5b (ENSMUSG00000061518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cox5b-004 Vega_transcript:OTTMUST00000126139 Uniprot/SPTREMBL:A0A0A6YVR0 UCSC:uc007aqw.1 GO:GO:0004129 GO:GO:0005740 GO:GO:1902600 MGI_trans_name:Cox5b-004 Vega_translation:178993 Vega_translation:OTTMUSP00000068267 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016491 goslim_goa:GO:0022857 goslim_goa:GO:0043226 goslim_goa:GO:0055085 OTTP:OTTMUSP00000068267 OTTT:OTTMUST00000126139 UniParc:UPI00053BD663
definition	codon_start : 2 note : transcript_id=ENSMUST00000195151 protein_id : ENSMUSP00000141224 translation : XVGALAAQALRAHGPRGAAVTRSMASGGGVPTDEEQATGLEREIMIAAQKGLVKRTTVLSSGFGCTKARVSDAPTVEPITSWCPTKWPTEPLCYLFRM

name	Cox5b (ENSMUSG00000061518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cox5b-003 Vega_transcript:OTTMUST00000126143 Uniprot/SPTREMBL:F7C106 UCSC:uc007aqw.1 GO:GO:0004129 GO:GO:0005740 GO:GO:1902600 MGI_trans_name:Cox5b-003 Vega_translation:178994 Vega_translation:OTTMUSP00000068268 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016491 goslim_goa:GO:0022857 goslim_goa:GO:0043226 goslim_goa:GO:0055085 OTTP:OTTMUSP00000068268 OTTT:OTTMUST00000126143 UniParc:UPI00053BD6D7
definition	codon_start : 2 note : transcript_id=ENSMUST00000081180 protein_id : ENSMUSP00000079944 translation : XGGVPTDEEQATGLEREIMIAAQKGLSTLVSFRTHTICYLQRQLQAPRKTLI

name
type	misc_feature
link
xref
definition	note : contig AC084389.1 1..206297(-1)

name	Cox5b (ENSMUSG00000061518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000126140 Vega_transcript:OTTMUST00000126140 MGI_trans_name:Cox5b-005 OTTT:OTTMUST00000126140
definition	note : retained_intron note : transcript_id=ENSMUST00000191790

name	Cox5b (ENSMUSG00000061518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000126141 Vega_transcript:OTTMUST00000126141 MGI_trans_name:Cox5b-006 OTTT:OTTMUST00000126141
definition	note : retained_intron note : transcript_id=ENSMUST00000192859

name	Cox5b (ENSMUSG00000061518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000126142 Vega_transcript:OTTMUST00000126142 MGI_trans_name:Cox5b-002 OTTT:OTTMUST00000126142
definition	note : processed_transcript note : transcript_id=ENSMUST00000193235

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cox5b (ENSMUSG00000061518)
Transcript ID	ENSMUST00000081180

Reports
substitution
cSNPs	1
Insertion	7
Deletion	8
SNPs	-1kb 36687611(c.-4078G>A), 36687692(c.-3997G>T), 36687846(c.-3843G>A), 36688177(c.-3512G>A), 36688207(c.-3482C>T), 36688677(c.-3012G>A), 36688757(c.-2932A>T), 36688933(c.-2756G>A), 36689118(c.-2571A>G), 36690107(c.-1582A>G), 36690594(c.-1095T>A), 36690644(c.-1045C>T), 36690709(c.-980G>A), 36690799(c.-890T>C), 36690809(c.-880T>C), 36691088(c.-601T>G), 36691090(c.-599T>G), 36691102(c.-587T>G), 36691227(c.-462A>G), 5'UTR CDS 36692486(c.131A>G), 3'UTR 36693362(c.205T>C), INTRON 36691705(c.1+16G>A), 36691840(c.1+151T>G), 36692040(c.2-171A>G), 36692073(c.2-138G>C), 36692124(c.2-87G>C), 36692165(c.2-46C>T), 36692178(c.2-33A>G), 36692180(c.2-31C>T), 36692182(c.2-29A>G), 36692188(c.2-23G>A), 36692287(c.75+3A>G), 36692336(c.75+52A>G), 36692576(c.39+26G>A), 36692659(c.39+109A>G), 36692960(c.40-237G>A), 36693064(c.40-133G>T), 36693119(c.40-78T>C), +1kb 36693462(c.951A>G), 36693681(c.1170A>G), 36693735(c.1224A>G), 36693798(c.1287A>G), 36693955(c.1444T>C), 36693968(c.1457G>A), 36693983(c.1472A>T), 36694158(c.1647T>C), 36694246(c.1735G>A), 36694721(c.2210T>C), 36694756(c.2245G>A), 36694833(c.2322C>G), 36694875(c.2364G>A), 36694883(c.2372T>C), 36694898(c.2387C>A), 36694932(c.2421A>G), 36694950(c.2439A>G), 36695111(c.2600G>A), 36695743(c.3232C>T), 36695776(c.3265C>T), 36695797(c.3286G>A), 36695813(c.3302C>T), 36695996(c.3485T>C), 36695998(c.3487G>A), 36696047(c.3536A>G), 36696080(c.3569A>T), 36696138(c.3627C>T), 36696191(c.3680C>T), 36696217(c.3706G>A), 36696266(c.3755T>C), 36696336(c.3825T>A), 36696370(c.3859A>G), 36696409(c.3898A>G), 36696469(c.3958G>T), 36696654(c.4143T>A), 36696665(c.4154T>C), 36696667(c.4156A>C), 36696971(c.4460T>C), 36696996(c.4485A>C), 36697024(c.4513A>G), 36697040(c.4529G>A), 36697046(c.4535A>C), 36697051(c.4540C>T), 36697082(c.4571A>G), 36697550(c.5039T>C), 36697566(c.5055A>G),
Insertions	-1kb 36691091 (c.-598_-597insCCG), 36691096 (c.-593_-592insGC), 5'UTR CDS 3'UTR INTRON +1kb 36693413 (c.902_903insT), 36695985 (c.3474_3475insT), 36696312 (c.3801_3802insT), 36696336 (c.3825_3826insCC), 36696692 (c.4181_4182insAGG),
Deletions	-1kb 36688907 (c.-2781_-2780delAC), 36690844 (c.-844_-843delAC), 36691052 (c.-636_-632delAAACA), 5'UTR CDS 3'UTR INTRON +1kb 36695022 (c.2512delA), 36695833 (c.3323_3330delTATGTATA), 36696686 (c.4176delC), 36696874 (c.4364delG), 36697025 (c.4515_*4518delATGG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	1
synonymous substitutions
non-synonymous substitutions	36692486 (p.Gln44Arg),
B6 transcript (ENSMUST00000081180)	GGVPTDEEQATGLEREIMIAAQKGLSTLVSFRTHTICYLQRQLQAPRKTLI*
MSMv4 transcript	GGVPTDEEQATGLEREIMIAAQKGLSTLVSFRTHTICYLQRQLRAPRKTLI*
homology	98.08 (52 / 52)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cox5b (ENSMUSG00000061518)
Transcript ID	ENSMUST00000081180

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TGTCTAAATTAGAGACTTCTGACCACGGTGCCTATTGTCATTTCCAGTTG CATTATTAACTTTCTTTCTGTCCCTCCTCCTCCTAGTATCCTCATCGTGGTGGAGTGGCC ACCAGGAGGTACCCTACATCTATGCCTCCAAAGCCCTTCTGCACCGCACCCCCCGCACCC CCCTCATCCTTGTCCCTGGGGCCAACACCATCACCTCCCATAACATTACTATAGGAGGAA AACTGAGGACGGTGCAACAGCTTTAATCCCAGCAGAGGTAACCAGATCTCTGTGAGCTTT AGACCACCCTGATCTACATAGGGAGTTAAAGGTCAGCCAGGCTACATAGTGATACCGTGC TTAAAAAACAAAACAAAACAGAGTGGAGGAGGGAATTGAGGCTAAGACTGTGTGTGTGGG GGGGTGTACTGTCAATTTCTGACGGAGTGGGCCATTGCAACAATTTGGTAACAACTAAAG CTGTCTGCAGTCTCGAACCCGTGGCTAACAGGCATAACAAACACAACAGGCTTCCTGAGC TCACGCCCAGGGTTGTATGATTCGTGGTGGAAGCCCTTGACTGCGGGAACTTCGGCTTCC ACAGCACCTCCACTACAAGAACTACTATGTGGCTGGGACACTGGGCGCGAACACTCAAGC GGACAGGTCATGAACCCGAAAGCCGCTAGCTGTCAGGGTGACTGACGCCACGCCCCGGAG GCGGCGGGAGTCTGCGCGGCCCACGAAGAGGCAGAACTGCGCATGTGCGGCGTCTACTTT TAGCGCTGCTTCGGCTGGTCGGGGCAGGAAGCGGAAGACTGACCGGGCGTTGTTAGACTC CCACCAACGGAAGTCCCGCCCATCTTGCTCAGCCTGTTCCCGGAAGTGCATCTGCTTGTC TCGGGCGAGATGGCTTCAAGGTTACTTCGCGGAGTGGGCGCTTTGGCGGCGCAGGCCCTG AGGGCCCACGGCCCCCGTGGCGCGGCCGTGACCCGCTCCATGGCTTCTGG
1	EXON 1	36,691,688	36,691,689	-	1	2	AG
	INTRON 1 - 2	36,691,690	36,692,210			521	GTACGTGACCAGCTGAGCGGGACAG..........CCATAGCTCATTTTTCTTCTTCTAG
2	EXON 2	36,692,211	36,692,284	1	0	74	GTGGTGTCCCCACTGATGAGGAGCAGGCTACTGGGCTGGAGAGGGAGATCATGATAGCAG CACAGAAGGGACTG
	INTRON 2 - 3	36,692,285	36,692,430			146	GTGAGGAGAAATGCTGTGTCCTCTG..........GGCAGGCGTTATCTGTCATAAATAG
3	EXON 3	36,692,431	36,692,550	0	-	120	TCAACTCTTGTCTCTTTCAGGACCCATACAATATGCTACCTCCAAAGGCAGCTTCGGGCA CCAAGGAAGACCCTAATCTAGTCCCGTCCATCAGCAACAAGAGAATAGTGGGCTGCATCT
	INTRON 3 - 4	36,692,551	36,693,196			646	GTAAGCACTTTGTTTTTATTTTCTG..........ACTGTCAACCGTCTTTCCCTTTCAG
4	EXON 4	36,693,197	36,693,386	-	-	190	GTGAAGAGGACAACTGTACTGTCATCTGGTTTTGGCTGCACAAAGGCGAGAGTCAGCGAT GCCCCAACTGTGGAACCCATTACAAGCTGGTGCCCCACCAAATGGCCCACTGAGCCCCTG TGTTATCTTTTCAGAATGTAAAGAAAAACTTCTCTCTAATAAAGACTAGCCATTGCACTG GCTCCTCCCA
	3' upstream sequence						TAGCTGGCTAGTCTTATGTCTATAGTCTTTTTTTTTTTAATATATATATATTGAGACCAC CTATCTCTTAATACTGGTTTGGCATCCACTTAGAATGTAAAACCAGTATAGAATTGTTAG AATTTTATTTTTAAAAAATTTTAAACTTTTTGTTGTTGCTGTTATTTGTTTGCTTTTCGA GACAGGGTTTCTCTTTTCTCTGTGTAGCCTTGGCTGGCCTGGAACTCACTCTGTAGACCA GGCTTGCCTTGACTTCAGATTCTGAGTGCTGGGATTAAAAGTATCTGCCACCACGGCCTG GCTAAAAATTCTTTTAAATTTTAACTTTTATATAATGTAGAGGGGGCAGAAACCAAGGGG GATTGTTAGGGGCAAGAGCAGTGACAATATGCTGACCTTGCTCAGATCTTCGTGGTTCCG TTTTGCCCTGCTAATGACTGAATAACTGGGCCATATGCTACAGAGACACTAACCCTGACG CAGGACTTAGGGGAAGGACGTTACAGAGCTCCAGCCCACTCTGTCCTCCAGTGAGAACTG TCACTGTGATCTCTGCACCTGTCAGTGGCTCCCTTTAAAAGAGAGAATGAAGAAAGTGAG ACGCACTGAGCTGGACCCGGTCATGGAAGTCCCAGTCACTTGAGAGACTGCCGTGAGACG ATACCTGAGCCTGGGTGACCTAGACCTCACTCTATAAAATAACAGTGATGATTGGAGCTT AGTATTGGTGCCTAGGTATTTACTGAATTTTTATGTGTGAGGAGTTTTTCTCTGGAAATA CTCACGGAAATATAAACTGGGGAGGGCAGCCACAGCTCATCTCAGCCAGCAAGTTTATGA TTCATGTTGAAATTCTCAAAGCAGATCCCTATAAAGTGGAAATGCCTTCTCATTCTGTGT TGAAATTTGCCAGAGGTGACTTTGGTTACTATCTATTAAGCGGGTTCACTATACATAATT TCCCGGTTGATTTCAGGGATGGAAAGTGGAGTGGCCCACC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cox5b (ENSMUSG00000061518)
Transcript ID	ENSMUST00000081180

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 52 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information