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Target CDS Information

Gene Symbol (Gene ID) Ncoa2 (ENSMUSG00000005886)
Cross Reference
CCDS CCDS35514.1
EMBL AC091248, AC121538
GO GO:0000122, GO:0000978, GO:0001162, ...show all
goslim_goa GO:0000988, GO:0003674, GO:0003677, ...show all
MGI_trans_name Ncoa2-001
OTTP OTTMUSP00000024144
OTTT OTTMUST00000051358
RefSeq_mRNA NM_001302702.1
RefSeq_mRNA_predicted XM_011238360.1, XM_011238361.1
RefSeq_peptide NP_001289631
RefSeq_peptide_predicted XP_011236662.1, XP_011236663.1
UCSC uc007ail.2
UniParc UPI00001EDCAC
Uniprot/SPTREMBL E9PV80
Vega_transcript Ncoa2-001, OTTMUST00000051358
Vega_translation 178732, OTTMUSP00000024144
Definition protein_id:ENSMUSP00000080413
translation:
MSGMGENTSDPSRAETRKRKECPDQLGPSPKRSTEKRNREQENKYIEELAELIFANFNDI
DNFNFKPDKCAILKETVKQIRQIKEQEKAAAANIDEVQKSDVSSTGQGVIDKDALGPMML
EALDGFFFVVNLEGSVVFVSENVTQYLRYNQEELMNKSVYSILHVGDHTEFVKNLLPKSM
VNGGSWSGEPPRRSSHTFNCRMLVKPLPDSEEEGHDSQEAHQKYEAMQCFAVSQPKSIKE
EGEDLQSCLICVARRVPMKERPTLPSSESFTTRQDLQGKITSLDTSTMRAAMKPGWEDLV
RRCIQKFHTQHEGESLSYAKRHHHEVLRQGLAFSQIYRFSLSDGTLVAAQTKSKLIRSQT
TNEPQLVISLHMLHREQNVCVMNPDLTGQAMGKPLNPISSSSPAHQALCSGNPGQDMTLG
SNINFPMNGPKEQMGMPMGRFGGSGGMNHVSGMQATTPQGSNYALKMNSPSQSSPGMNPG
QASSVLSPRQRMSPGVAGSPRIPPSQFSPAGSLHSPVGVCSSTGNSHSYTNSSLNALQAL
SEGHGVSLGSSLASPDLKMGNLQNSPVNMNPPPLSKMGSLDSKDCFGLYGEPSEGTTGQA
EASCHPEEQKGPNDSSMPQAASGDRAEGHSRLHDSKGQTKLLQLLTTKSDQMEPSPLPSS
LSDTNKDSTGSLPGPGSTHGTSLKEKHKILHRLLQDSSSPVDLAKLTAEATGKELSQESS
STAPGSEVTVKQEPASPKKKENALLRYLLDKDDTKDIGLPEITPKLERLDSKTDPASNTK
LIAMKTVKEEVSFEPSDQPGSELDNLEEILDDLQNSQLPQLFPDTRPGAPTGSVDKQAII
NDLMQLTADSSPVPPAGAQKAALRMSQSRMIGSSTSRPSMPSGEWAPQSPAVRVTCAATT
GAMNRPVQGGMIRNPTASIPMRANSQPGQRQMLQSQVMNIGPSELEMNMGGPQYNQQQAP
PNQTAPWPESILPIDQASFASQNRQPFGSSPDDLLCPHPAAESPSDEGALLDQLYLALRN
FDGLEEIDRALGIPELVSQSQAVDAEQFSSQESSIMLEQKPPVFPQQYASQAQMAQGGYN
PMQDPNFHTMGQRPNYTTLRMQPRPGLRPTGIVQNQPNQLRLQLQHRLQAQQNRQPLMNQ
ISSVSNVNLTLRPGVPTQAPINAQMLAQRQREILNQHLRQRQMQQQVQQRTLMMRGQGLN
VTPSMVAPAGLPAAMSNPRIPQANAQQFPFPPNYGISQQPDPGFTGATTPQSPLMSPRMA
HTQSPMMQQSQANPAYQPTSDMNGWAQGSMGGNSMFSQQSPPHFGQQANTSMYSNNMNIS
VSMATNTGGLSSMNQMTGQMSMTSVTSVPTSGLPSMGPEQVNDPALRGGNLFPNQLPGMD
MIKQEGDASRKYC

Chromosome 1
Length
Position(start - end)
81,932
13,142,761 - 13,224,694
Orient to Chromosome minus
Link Location : (1:13142761-13224694)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ncoa2 (ENSMUSG00000005886)
Transcript ID ENSMUST00000081713
Reports
substitution
cSNPs10
Insertion133
Deletion167
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num10
non-synonymous num0
synonymous substitutions 13149068 (p.Thr1248Thr), 13150819 (p.Leu1192Leu), 13150862 (p.His1177His), 13152454 (p.Asn1133Asn), 13162179 (p.Arg905Arg), 13174469 (p.Ser668Ser), 13180557 (p.Val300Val), 13184221 (p.Gln228Gln), 13184353 (p.Gly184Gly), 13186905 (p.Leu123Leu),
non-synonymous substitutions
B6 transcript
(ENSMUST00000081713)
MSGMGENTSDPSRAETRKRKECPDQLGPSPKRSTEKRNREQENKYIEELAELIFANFNDI
DNFNFKPDKCAILKETVKQIRQIKEQEKAAAANIDEVQKSDVSSTGQGVIDKDALGPMML
EALDGFFFVVNLEGSVVFVSENVTQYLRYNQEELMNKSVYSILHVGDHTEFVKNLLPKSM
VNGGSWSGEPPRRSSHTFNCRMLVKPLPDSEEEGHDSQEAHQKYEAMQCFAVSQPKSIKE
EGEDLQSCLICVARRVPMKERPTLPSSESFTTRQDLQGKITSLDTSTMRAAMKPGWEDLV
RRCIQKFHTQHEGESLSYAKRHHHEVLRQGLAFSQIYRFSLSDGTLVAAQTKSKLIRSQT
TNEPQLVISLHMLHREQNVCVMNPDLTGQAMGKPLNPISSSSPAHQALCSGNPGQDMTLG
SNINFPMNGPKEQMGMPMGRFGGSGGMNHVSGMQATTPQGSNYALKMNSPSQSSPGMNPG
QASSVLSPRQRMSPGVAGSPRIPPSQFSPAGSLHSPVGVCSSTGNSHSYTNSSLNALQAL
SEGHGVSLGSSLASPDLKMGNLQNSPVNMNPPPLSKMGSLDSKDCFGLYGEPSEGTTGQA
EASCHPEEQKGPNDSSMPQAASGDRAEGHSRLHDSKGQTKLLQLLTTKSDQMEPSPLPSS
LSDTNKDSTGSLPGPGSTHGTSLKEKHKILHRLLQDSSSPVDLAKLTAEATGKELSQESS
STAPGSEVTVKQEPASPKKKENALLRYLLDKDDTKDIGLPEITPKLERLDSKTDPASNTK
LIAMKTVKEEVSFEPSDQPGSELDNLEEILDDLQNSQLPQLFPDTRPGAPTGSVDKQAII
NDLMQLTADSSPVPPAGAQKAALRMSQSRMIGSSTSRPSMPSGEWAPQSPAVRVTCAATT
GAMNRPVQGGMIRNPTASIPMRANSQPGQRQMLQSQVMNIGPSELEMNMGGPQYNQQQAP
PNQTAPWPESILPIDQASFASQNRQPFGSSPDDLLCPHPAAESPSDEGALLDQLYLALRN
FDGLEEIDRALGIPELVSQSQAVDAEQFSSQESSIMLEQKPPVFPQQYASQAQMAQGGYN
PMQDPNFHTMGQRPNYTTLRMQPRPGLRPTGIVQNQPNQLRLQLQHRLQAQQNRQPLMNQ
ISSVSNVNLTLRPGVPTQAPINAQMLAQRQREILNQHLRQRQMQQQVQQRTLMMRGQGLN
VTPSMVAPAGLPAAMSNPRIPQANAQQFPFPPNYGISQQPDPGFTGATTPQSPLMSPRMA
HTQSPMMQQSQANPAYQPTSDMNGWAQGSMGGNSMFSQQSPPHFGQQANTSMYSNNMNIS
VSMATNTGGLSSMNQMTGQMSMTSVTSVPTSGLPSMGPEQVNDPALRGGNLFPNQLPGMD
MIKQEGDASRKYC*
MSMv4 transcript
MSGMGENTSDPSRAETRKRKECPDQLGPSPKRSTEKRNREQENKYIEELAELIFANFNDI
DNFNFKPDKCAILKETVKQIRQIKEQEKAAAANIDEVQKSDVSSTGQGVIDKDALGPMML
EALDGFFFVVNLEGSVVFVSENVTQYLRYNQEELMNKSVYSILHVGDHTEFVKNLLPKSM
VNGGSWSGEPPRRSSHTFNCRMLVKPLPDSEEEGHDSQEAHQKYEAMQCFAVSQPKSIKE
EGEDLQSCLICVARRVPMKERPTLPSSESFTTRQDLQGKITSLDTSTMRAAMKPGWEDLV
RRCIQKFHTQHEGESLSYAKRHHHEVLRQGLAFSQIYRFSLSDGTLVAAQTKSKLIRSQT
TNEPQLVISLHMLHREQNVCVMNPDLTGQAMGKPLNPISSSSPAHQALCSGNPGQDMTLG
SNINFPMNGPKEQMGMPMGRFGGSGGMNHVSGMQATTPQGSNYALKMNSPSQSSPGMNPG
QASSVLSPRQRMSPGVAGSPRIPPSQFSPAGSLHSPVGVCSSTGNSHSYTNSSLNALQAL
SEGHGVSLGSSLASPDLKMGNLQNSPVNMNPPPLSKMGSLDSKDCFGLYGEPSEGTTGQA
EASCHPEEQKGPNDSSMPQAASGDRAEGHSRLHDSKGQTKLLQLLTTKSDQMEPSPLPSS
LSDTNKDSTGSLPGPGSTHGTSLKEKHKILHRLLQDSSSPVDLAKLTAEATGKELSQESS
STAPGSEVTVKQEPASPKKKENALLRYLLDKDDTKDIGLPEITPKLERLDSKTDPASNTK
LIAMKTVKEEVSFEPSDQPGSELDNLEEILDDLQNSQLPQLFPDTRPGAPTGSVDKQAII
NDLMQLTADSSPVPPAGAQKAALRMSQSRMIGSSTSRPSMPSGEWAPQSPAVRVTCAATT
GAMNRPVQGGMIRNPTASIPMRANSQPGQRQMLQSQVMNIGPSELEMNMGGPQYNQQQAP
PNQTAPWPESILPIDQASFASQNRQPFGSSPDDLLCPHPAAESPSDEGALLDQLYLALRN
FDGLEEIDRALGIPELVSQSQAVDAEQFSSQESSIMLEQKPPVFPQQYASQAQMAQGGYN
PMQDPNFHTMGQRPNYTTLRMQPRPGLRPTGIVQNQPNQLRLQLQHRLQAQQNRQPLMNQ
ISSVSNVNLTLRPGVPTQAPINAQMLAQRQREILNQHLRQRQMQQQVQQRTLMMRGQGLN
VTPSMVAPAGLPAAMSNPRIPQANAQQFPFPPNYGISQQPDPGFTGATTPQSPLMSPRMA
HTQSPMMQQSQANPAYQPTSDMNGWAQGSMGGNSMFSQQSPPHFGQQANTSMYSNNMNIS
VSMATNTGGLSSMNQMTGQMSMTSVTSVPTSGLPSMGPEQVNDPALRGGNLFPNQLPGMD
MIKQEGDASRKYC*
homology100.00 (1394 / 1394)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ncoa2 (ENSMUSG00000005886)
Transcript ID ENSMUST00000081713
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGCTGCACGGGTGGGAGCCGGCCGAGGGGAGGCAGGACCTGGGAAGTGCC
GGGGGTGTGTGAAGGTGACGCGGCCGGCAGGGGCGGCGGCGGGGGCTCGGGCGTCTGGGG
GGCCTCGGGCTTGGGTGGCTTCGGGGCGGTAGCGCTCGGGCCGCGCAGGCCGGGCCGCGG
TGGGGGCGGGGAGCCGGGGTCGGGCGGCGGCGGCGGTGGCGGCGCCGCGCCGGGCTCGCC
CCTGACTTAACTTTCTGGGTGCGGGCATGTGTGCCGGAGGCGCGCTGGGGCCGCGGCCGG
GGGCGGGAGGCGGGCTGCGGGCCAGGAGGTTCCGGGTTGGCTCGCCAGCGCCCCCTCTTC
CGTACCCCTTCTGCGGCCCCTGCAGGGACAGGCCCTCGGGGGCCCCCCGCGGGAAGCGGG
AGGGGTCCTGGCGGCCCTCGCGCCCCGGTCACGCCCTGGGCCGGGGACCCTCCTCTCCGG
GCCCCTGGAGGCTCCCGGGGAGGCGTCCAGGGTCGGCGCCGCGGGCTGGAGTGCCCGCAC
CCCGCCCCTGGGGGAGTCCTGGAGGCGCCGCGGCCGCGCTCGGGGGTGGCTCGGTCCCTG
CTTCCATGGTCCCTCCCTTTCCCCTCCCCCAAGTGGCTTCCGGGGCCTGCGGACTGAGGG
GCGGGAATCGGGGACCCGAGCCCCTTACTCGCCGGGAGTGACGTTGGGCCTCAAGCCTAG
AGGGCCTGTCACTGGCAGGGGAAACTTTCCCAAACCCGAGCCTGAGCTCGAGCACCCTCC
TCCGCCACCTCGTCCTCTAATCCCACTCCCACTCCACCTCCTCCGACTCCTTCCCCTCCC
ACCGACCCGAATCTGGCTGTGCCTGACTGATGGGGCAGTGAGCCAATGGAAGGCAGGAAC
TGACCTGCCGGGTACCGGTAAGCCAATGGTGGGAGCCAGAGGCAGGAAGGAGGCGGGGTT
TCTTCCGTCCAGTTAGGGCTGAGTTGCAGGCGGGGCGGGGGAGCCTTGGA
1 EXON 1 13,372,183 13,372,439 - - 257
GACGCCGCGAGCCCTCCACTCTGGCGCGTCCCTTGGTCACCCGCACCTGGGTTTGTGGAA
TAGTGTCACTCACAGAATCTGTGACCCGGGGAGACCTGCATAGGTGCGCGAAGATATTGC
TTTTCTCTGGTGCTGCGAGAGGCGTTGTTTTAGACATGACAAAGTCTAAAGCCACTTCAG
GATGTGGCAGTAACTGCGAGGCCCGGTTTTAAAATGGCATATGTTGATAGTGACCGCGTT
CTGGATCTCAGCACCAG
INTRON 1 - 2 13,286,026 13,372,182 86,157
GTGAGATCTTTGAAGGTCTGCGTTA..........CGTCTGGGTTTTGTTCCCATTGCAG
2 EXON 2 13,285,969 13,286,025 - - 57
ATTTTCCTCGCATCTGGCTTCACTGCATTGGCTCTTCTGCACTGTGTATAGGCACAG
INTRON 2 - 3 13,224,714 13,285,968 61,255
GTGAGTTAATCCTTGGGTCTTTCAT..........CCTTTTCCCATGTGTTCTGTTTTAG
3 EXON 3 13,224,609 13,224,713 - 2 105
TTGCTGATATGTGTTCAAGATGAGTGGGATGGGAGAAAACACCTCTGACCCGTCCAGGGC
AGAGACCAGAAAACGCAAGGAATGTCCCGACCAGCTCGGACCCAG
INTRON 3 - 4 13,221,480 13,224,608 3,129
GTGAGCCGATCGTCAACCAAAGAAA..........ATAGTAATGTCCCGTTCCTTCTTAG
4 EXON 4 13,221,307 13,221,479 2 1 173
CCCCAAAAGGAGCACTGAGAAACGGAACCGCGAGCAGGAGAATAAGTACATAGAGGAGCT
GGCCGAGCTGATCTTCGCAAACTTTAATGATATTGACAACTTCAACTTCAAACCTGACAA
ATGTGCCATCCTAAAAGAAACTGTGAAGCAGATCCGCCAGATCAAAGAGCAAG
INTRON 4 - 5 13,190,191 13,221,306 31,116
GTAAGAGGACGGGAGGGGTTCTGCG..........AATTTGCTCTTGTGTTTTGTTGCAG
5 EXON 5 13,190,087 13,190,190 1 0 104
AGAAAGCAGCAGCTGCCAACATAGATGAAGTGCAGAAGTCAGATGTGTCGTCCACGGGGC
AGGGTGTCATCGACAAGGATGCACTGGGGCCCATGATGCTTGAG
INTRON 5 - 6 13,186,911 13,190,086 3,176
GTAACCACAGCCTTACCTGGTTTTG..........GTTTTTATGTTGTTGCACCCTGTAG
6 EXON 6 13,186,733 13,186,910 0 1 178
GCCCTTGATGGGTTCTTCTTCGTTGTGAACCTGGAAGGCAGTGTGGTGTTCGTGTCAGAG
AATGTGACACAGTATCTACGGTATAACCAAGAAGAGCTGATGAACAAGAGTGTCTACAGC
ATCCTGCATGTCGGGGACCACACTGAATTTGTCAAGAACCTGCTGCCAAAGTCCATGG
INTRON 6 - 7 13,184,364 13,186,732 2,369
GTAAATGTCAGTGGATCCCGCTGCC..........CAGGTGTCTCTTTCCCCCCTCGCAG
7 EXON 7 13,184,175 13,184,363 1 1 189
TGAATGGAGGCTCCTGGTCTGGAGAACCTCCCAGGCGGAGCAGCCATACCTTCAACTGTC
GCATGCTGGTGAAGCCTTTGCCAGATTCAGAAGAGGAAGGCCATGATAGCCAGGAAGCCC
ATCAGAAATACGAGGCGATGCAATGCTTCGCTGTGTCTCAGCCCAAGTCCATCAAAGAGG
AAGGCGAAG
INTRON 7 - 8 13,181,318 13,184,174 2,857
GTAGGACGACCCTGGGAGAGAGAGG..........TGATAAACAATTGTGTCCTCTTAAG
8 EXON 8 13,181,216 13,181,317 1 1 102
ATTTGCAGTCCTGCTTGATTTGTGTGGCACGAAGAGTCCCCATGAAGGAAAGACCAACTC
TTCCCTCATCAGAAAGCTTTACCACCCGCCAGGACCTCCAAG
INTRON 8 - 9 13,180,625 13,181,215 591
GTAAATTCCTGTCAGGGAAGACAAA..........TGTAATGTCTGCTGTTATCTTTCAG
9 EXON 9 13,180,481 13,180,624 1 1 144
GCAAGATCACTTCACTGGACACTAGCACCATGAGAGCCGCCATGAAGCCGGGCTGGGAAG
ATCTGGTGAGAAGATGCATTCAGAAGTTCCACACACAGCATGAAGGGGAGTCTCTATCAT
ATGCCAAGAGGCATCACCATGAAG
INTRON 9 - 10 13,177,222 13,180,480 3,259
GTAGGCCTCTCTGCATACTACTCTA..........GCTTTGTTTCCTTTTTTGCCTGCAG
10 EXON 10 13,177,074 13,177,221 1 2 148
TTCTGAGACAAGGGTTGGCGTTCAGTCAGATCTATCGTTTTTCTTTGTCTGATGGCACTC
TCGTTGCTGCACAAACCAAGAGCAAACTCATCCGTTCTCAGACTACTAATGAGCCTCAGC
TTGTAATATCTTTACACATGCTTCACAG
INTRON 10 - 11 13,175,349 13,177,073 1,725
GTAATCATAAACTCAGCCTCGGTTT..........ATATGTTTCTTTCCTCATTGTACAG
11 EXON 11 13,174,079 13,175,348 2 0 1,270
AGAGCAGAATGTATGTGTAATGAATCCGGATCTGACTGGACAAGCGATGGGGAAGCCATT
GAATCCAATTAGCTCTAGCAGCCCTGCCCACCAGGCCCTGTGCAGTGGGAACCCAGGTCA
GGACATGACCCTCGGTAGCAATATAAATTTTCCCATGAATGGCCCAAAGGAACAAATGGG
CATGCCTATGGGCAGGTTTGGTGGTTCTGGGGGCATGAACCATGTGTCAGGCATGCAAGC
AACCACTCCTCAGGGTAGTAACTATGCACTCAAAATGAACAGTCCCTCGCAAAGCAGCCC
CGGCATGAACCCGGGGCAAGCCAGCTCCGTGCTCTCCCCAAGGCAGCGCATGAGCCCCGG
CGTGGCTGGCAGTCCTCGCATCCCACCCAGTCAGTTTTCCCCTGCAGGAAGCTTGCATTC
CCCTGTGGGAGTTTGCAGCAGCACAGGAAATAGCCATAGTTATACCAACAGTTCCCTCAA
TGCACTGCAAGCCCTCAGCGAGGGCCATGGGGTCTCACTCGGGTCCTCGCTGGCTTCACC
GGACCTAAAAATGGGCAATTTGCAAAACTCCCCAGTTAATATGAATCCTCCCCCACTCAG
CAAGATGGGAAGCTTGGACTCCAAAGACTGTTTTGGACTTTATGGGGAGCCCTCAGAAGG
TACAACTGGACAAGCAGAGGCCAGCTGCCATCCTGAAGAACAAAAGGGGCCCAATGATTC
CAGCATGCCCCAGGCGGCCAGCGGGGACAGGGCTGAGGGACACAGCCGGCTGCATGACAG
CAAAGGGCAGACCAAACTCCTGCAGCTGCTGACCACCAAGTCCGACCAGATGGAGCCTTC
ACCCTTGCCCAGCTCCTTGTCGGACACAAACAAGGACTCGACAGGGAGCTTGCCTGGGCC
TGGGTCCACGCATGGCACCTCGCTCAAGGAGAAGCATAAGATTTTGCACAGACTCTTACA
GGACAGCAGTTCCCCTGTGGACTTGGCCAAGCTGACAGCAGAAGCCACAGGCAAAGAGCT
GAGCCAGGAGTCCAGCAGCACAGCTCCTGGGTCGGAAGTGACTGTCAAACAGGAGCCAGC
GAGCCCCAAGAAGAAAGAGAATGCACTACTGCGCTATTTGCTCGACAAAGATGATACTAA
AGATATTGGTTTACCGGAAATAACCCCCAAACTCGAGCGACTGGACAGTAAGACAGATCC
TGCCAGTAACACAAAGTTAATTGCTATGAAAACTGTGAAGGAGGAGGTGAGCTTTGAGCC
CAGTGACCAG
INTRON 11 - 12 13,167,107 13,174,078 6,972
GTGAGTTTTCTAATGTCTTCTCCCA..........GTACACTTCTGTTTGTTAACTGCAG
12 EXON 12 13,166,896 13,167,106 0 1 211
CCTGGCAGCGAGCTGGACAACTTGGAAGAGATTTTGGATGATTTGCAGAACAGTCAGTTA
CCACAGCTTTTCCCAGACACAAGGCCAGGAGCTCCTACTGGGTCAGTTGACAAGCAAGCC
ATCATCAATGACCTCATGCAACTCACAGCTGACAGCAGTCCCGTCCCACCTGCCGGAGCC
CAGAAGGCAGCACTGCGCATGTCACAGAGCA
INTRON 12 - 13 13,162,289 13,166,895 4,607
GTAAGTATGCGCTCTAACCCCATCA..........TCAGTTTCCTCTGTCTTGGATGCAG
13 EXON 13 13,162,073 13,162,288 1 1 216
GAATGATTGGCAGCAGCACTTCCCGGCCCAGCATGCCTTCTGGGGAATGGGCACCACAGA
GTCCAGCTGTGAGAGTCACTTGTGCTGCTACCACTGGTGCCATGAACCGGCCAGTCCAAG
GAGGCATGATTCGGAACCCAACAGCCAGCATCCCCATGCGAGCCAACAGCCAGCCTGGCC
AAAGACAGATGCTTCAGTCTCAGGTCATGAACATAG
INTRON 13 - 14 13,160,291 13,162,072 1,782
GTAAGGCTCCTTCCCTGCTGCCCTT..........TCTTTTTTTTTCCTCCCTCTTTCAG
14 EXON 14 13,160,161 13,160,290 1 2 130
GCCCTTCTGAGTTAGAGATGAACATGGGAGGACCTCAGTATAATCAACAGCAGGCCCCTC
CGAACCAAACTGCCCCGTGGCCTGAGAGCATCCTGCCTATAGACCAGGCATCGTTTGCCA
GCCAGAACAG
INTRON 14 - 15 13,156,536 13,160,160 3,625
GTAAGTCCAGGCCCCCGGAGAGCTA..........CATGGTGAAGTTTGTCTCTTTACAG
15 EXON 15 13,156,370 13,156,535 2 0 166
GCAGCCCTTCGGCAGCTCCCCTGATGACCTGCTGTGTCCACATCCTGCAGCAGAGTCGCC
AAGCGATGAGGGCGCTCTTCTTGACCAGCTGTATCTGGCCTTGCGGAACTTCGATGGCCT
TGAGGAGATTGATAGAGCTCTGGGGATACCAGAACTGGTCAGCCAG
INTRON 15 - 16 13,153,076 13,156,369 3,294
GTAGGCCAGAGCATCAGAGCGGCCA..........GTGCTTATTTGGGGCTTCTTTTCAG
16 EXON 16 13,152,797 13,153,075 0 0 279
AGCCAAGCTGTGGATGCAGAGCAGTTCTCAAGTCAGGAGTCCAGCATAATGCTGGAGCAG
AAGCCCCCCGTTTTCCCACAGCAGTACGCATCTCAGGCACAAATGGCCCAGGGTGGCTAT
AATCCCATGCAAGATCCAAACTTTCACACCATGGGACAGCGGCCAAATTACACCACACTC
CGTATGCAGCCACGGCCAGGCCTCAGGCCCACAGGCATTGTGCAGAACCAGCCAAACCAA
CTGAGACTTCAGCTTCAGCACCGCCTCCAAGCACAGCAG
INTRON 16 - 17 13,152,457 13,152,796 340
GTTAGTTTCTCATGGGACTCAGGTG..........TGCTAATGCCCGTGTTTGTGTGTAG
17 EXON 17 13,152,379 13,152,456 0 0 78
AACCGCCAGCCGCTTATGAATCAGATCAGCAGTGTTTCCAATGTGAACCTGACTCTGAGG
CCTGGAGTGCCCACTCAG
INTRON 17 - 18 13,150,919 13,152,378 1,460
GTGAGAAGCCTCTCATTTTTCCTCC..........CCTTCATGATTGCCCCCAATTTCAG
18 EXON 18 13,150,690 13,150,918 0 1 229
GCTCCTATTAATGCACAGATGCTGGCCCAGAGGCAGAGGGAAATCCTCAACCAACACCTT
CGGCAGAGACAGATGCAGCAGCAGGTGCAGCAGCGGACTCTGATGATGAGAGGACAGGGC
TTGAATGTGACCCCAAGCATGGTGGCTCCCGCTGGCCTACCAGCAGCCATGAGCAATCCC
CGGATCCCCCAGGCCAATGCCCAGCAGTTCCCATTTCCTCCGAACTACG
INTRON 18 - 19 13,149,109 13,150,689 1,581
GTACTGACTTAGATCCCTCCCACCG..........CTTCTGTTTTGTTTTTGTTTTTAAG
19 EXON 19 13,148,931 13,149,108 1 2 178
GAATAAGTCAACAACCTGATCCTGGCTTTACTGGGGCTACGACTCCCCAGAGTCCTCTAA
TGTCTCCCCGGATGGCACATACTCAGAGTCCCATGATGCAGCAGTCTCAAGCCAACCCAG
CCTACCAGCCCACCTCAGACATGAATGGATGGGCACAGGGGAGCATGGGTGGAAACAG
INTRON 19 - 20 13,148,516 13,148,930 415
GTAACATCACATTACTGCGTCTGAT..........ACTAACTCTGTCTCCCACGCTACAG
20 EXON 20 13,148,317 13,148,515 2 0 199
CATGTTCTCACAGCAGTCCCCACCACACTTTGGGCAACAAGCAAACACCAGCATGTATAG
TAACAACATGAACATCAGTGTGTCGATGGCAACCAACACGGGTGGCTTGAGCAGCATGAA
CCAGATGACAGGCCAGATGAGCATGACCTCAGTGACCTCCGTGCCTACGTCAGGACTGCC
CTCCATGGGTCCCGAGCAG
INTRON 20 - 21 13,146,965 13,148,316 1,352
GTAAGAGCCTCAGAGAAGCAGCTCA..........GAAATGTGTCATGTTGTCACCACAG
21 EXON 21 13,146,875 13,146,964 0 0 90
GTCAATGACCCTGCTCTGAGGGGAGGCAACCTTTTCCCAAACCAACTGCCTGGAATGGAC
ATGATCAAGCAGGAGGGAGATGCATCTCGG
INTRON 21 - 22 13,142,773 13,146,874 4,102
GTAAGCAGCAGGAGCCCAGAGTGCA..........AACCTTTCTGTCTGTTTCCCCTCAG
22 EXON 22 13,139,105 13,142,772 0 - 3,668
AAATACTGCTGACCCTGGAGAAACTGTCTGCATCTTTCTTCAACCCACTGGGCTTACAAA
CATCTACCAGTCTGGAGAGCTGCGTCTCTTTGTGTTGCCACCTGACATGCCGCCAGTTCT
CCCAGGACATAGCAGCAGACAGTCGGGCCCTGGGCCCGCAGCATAGAGCGTGCTGGCTTG
GCTGCCACCGGAAGAGTTGCCTCTCCCGACAGCCTGCAGCTCGCCTCCAGACCAACCCGC
AGTCTGTTCACTGCATTCACCGTAGTGCAACTTAGATCTCCTGCAGAGTAACTGTCCCCA
GGCCGACTTCATCCCCATCAGATTGAATGTATTTAAATGTGTGTGTTTGAGGAGAGCCAT
GCCCTTGGCCTGTTCCTGCTCGGCTCCAGACACTGGTTTCTTGCTTTGTTCTCTGTGGCT
CTTCTGTGTAAAAGATGAGAATCTTATCTAGAGGAAAGAAAGGAACTTTTAACACAGTAC
AACCCAAGGTGTTCTAAGCTTAAAGCCTGCATTTGACTGGGATGGAGACAGGGCAGACAC
TGTGCACAGTGCTGTGTATGCCGGCACACCTAGTCAGCAACACGTAACCGAGGCAGAGTT
CTGTCTCCAGGAAGGAGTGTCCCGTCACTGAACAGATGGAAGGCTCTTGAGAGAGGCTGT
TAGCATTAACAAGTATCTGTTCCCACTTTTCTCTGTTAAAACCAAACTAGTTTCCCCTAA
ATCATGAATCAAAAAGAAATACTTGTTTCTAAATTGTTTTTAGATCAGATAGTTTGATTG
GCATCTCTTCCCTTCCTCTCCCCACCTTCTCTCGTCCCTCCCTCTTTCATTCCTTTAAAG
TAAAAACATCAACAACAGCATACACCATAGAGACCAGGGAAGCCCTTAGGATCTCTCAGT
GCTGTGCCAGCCACTTACAGCAGCTTCCCAGTGACCATGCATTTCCTATCAGAGAGGAAC
AAAGTCAGGCTGTGACATCTGCTTAGGTAGCCTGGGCTGCCCCATCAGCTCAGGCCTCCA
AAATGAGAGAACTTACTAATGAAATCAACAGCAGACGTCACGACAGATCTAACCTCTGCC
ATGTGGGGTTGTTTTTTATTTTTGGTTTTTAGCAGTGCTGACGAAGCCGAAGTTTTGTAA
GGTACATAAAGATCCAATTTATATGTAAACAAGCAATAATTTAAGTTCTGAACTTAAGTG
TTTTAACTGTATAATTTTGTGAGGTATACATATTGTGGGATTGACTCAAAATGAGGTACT
TCAGTATTAAATTAGATATCTTCATAGCAATGTCTCCTAAAGGTGTTTTGTAACGGCTGC
CAATGCCTTGGTTAGACCTGACTTGTAGACGTAAGACCTTTTGTTTTCTAACCCTTGAGA
CTCTCCTCATGAATCCTGTATCTAATCTATATGATATGCAGCCGCTGTCAGAACCAAGTC
TTGATTTTATATGTTTATATTCTTTCTTAATAAACCTTAGAAAGACAACATTACTAAGCA
GCCCACTTTGATGGTTGTTTTCTTGCCCACTGTCGGGGATAACCTCTATTAACTGGTGTC
AGTTTCAGACAGCTGCAGTACCCAGAACCGAGACCTTTTCAATTCTCCCCAACCTTGATA
CACACACTTTCGTACCTAAATTTCAGAATGATGTCTTTTTGATGTCTAAAAACAAAGCAT
TTTATAATATCTCATTATCCAAGCTTTCTAGGAACAGAGAAGATTTTCCTTGAAGTTTGT
TTATTCCTGGCAGGGTTAAAAACATATAAACTACCCTATTTATATTTATGTCTCCCTATA
TATCTACAGATTGTAGAAATATAGAAAGAGATGTGACCCAAAGACAAATGGTCAGTCATC
TGAAAGTGTTGCTGCGTGCTAAGGAACTCTGGAAATTTGCATTTCCATACCTTTTTCCAC
TTAGAGAAGAATCTCAGTGAGGGAGGTGGCCCAGGAACAGCACTTCCCCGTTGGCCACCA
GTTCCTGTGTCTGCTCGAGACTCTACCAAACCATTGGCTTGCACATCTGTCCTGCAAAGG
GAGCAGATAGAACCCAGAACTCCAGGCCCCACCCCAGGAGTGAGGCTCAGGTGCACTACT
GAGCTCGACCTGTTCTCAGATAAGTCAGAAATGTGAGGTAGGTAAAAATGACTTCACACA
GCACAAGAGAAAAAGGAATTTAAAACATACTTGTTTTGTATTAAATCCCATCTCACTGTA
ACATCAAGCCACAATATCTTACCTTTCAGCCTTCATCCAATCTCCCACTGCTTTCTAATG
TTGACCCGGCTGTTAGCGTAGCCCATGGTCATGGCAAATCCTCTCACAGGTCAGAGCAGC
CATGAACTGTGTGCCATCTCATCAGGAGGATCAATCGCATCAGCAAAGGCATCCTGATCA
TGTTCTCAGAGCCAGGGCCAGCCCAGCCTCCCCTGCCATCAGTATTGCTCACGCTCTGCA
CAACACATTTGTACTTGGTTTTGTCTGACAGAACATAGAATCAGTGTTCTCTTAGATGAC
TCAATGTGAAAAGCGTAATGTGAAAAGGACACACCTGATCGTGGTTGTAAAATCCATGTA
AGTGTTCATGCAACATGGTGAGTTTTAAAAGTGAAGTGTGCTGTGATACTACAACCAATT
GACTCAAAGATTAAAGCACGCACACACACACACACACACATACACACGTGTATCTCTTAC
GACCTGTAATGATTGAAAGCAATGGTTTTTTTGCAGTTTAAGATGCAATTTTTAATCTGT
GTTTAAAAACGGAGTTCATATGGGTGTGACACGTGAACTGGGAGGCACAGATCCACTTGC
AGAACCCAAAGATACACAATCAATTTTGAAATGCAACTTAAGCCATTAATTGTTGGTGTG
AATTTAAAATTTTCTAGTTGTTTATATGGTAGTATGCTGCCGAAGAGCAAAGCATTCTCT
GCACAAAAGAAAACACTGTAGTGGCTTCGATTTTAATTAGAACTTTCTCCCTGGTGTTTC
TTTATAGACTAAAACAAAATCTTTTAAGTTTCTTTACTACAGGTAAAAGCTATGTGCAAG
AACCTCAAAATGCTAAAACCTAGCATAATGCCTTAGATCTGTTTTTAAGTCTTGTATATT
CCTACATAGCTGTCCAATGTATTATATTTGTATAGTGAATTGTGTAAAATTTTTGAATAA
GTAAGTCATCGCTTACCCGTATGTTACTGAACAGTGATGACAACTCGTTTCTTCAAACAT
TTAACTGTCTTCTCTTTTTCCTTTGTCATTTGTGGGTTTTATTTGTACAGTTCCTCATGA
AGTTGCATTTGAGATATGTGTATATGAAAAGATTATACAAGGGTAAAATTAAGCAATATA
TTAACTATGGTTCTTCAGGAGAAAGCTTACAGTGTTTCAGGTTGTGATTTATTTTCAAAA
CAGAGTTGACTCTGAACATCACTTTGTTCATCTGCATTGATGTTTGTATTTCTAGTGTGA
GCAGTTTATGCAAAGGTAGATATATACAGAGAAATTTTAAATACATTTATGCAAGTTACT
ATTGCTTTGCTGATGCTATTTGCTTATTTGATGTTAAATAATGCTATTGTAAATAAAGAA
TCTGTTGTTACTGCATCATTTAATAAATTTTAATGCCTTCGGGTTTTACATGGCTTTAGA
GATTTTAA
3' upstream sequence
TGTGGCGATACGGTATCTTCTTTTGTAGTTTAAACTTAAAAATACCTGAGAACTACTACT
GGCTGCTCTTTCAGAAGACCCAGATTCAATTTCTAGCACCCACACATCATCTCAGAATCA
TCTGTAACTCCAGTTCCAGGAGGTCCAGCCCCTTCTTCCTGCTCTTACAGGCATTAGGAC
CACTCCTGATACAGTTTTCAAACAAACAAAGCATCTATAGACATACAACCTTTTAAAAAA
ATATATTAACGACATTATCTTTTAAGAATTTCTTGGGCTGGGTGGGTAGGGAAGTGGGGG
GGAGGGTATGGAGGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATATGTAATA
AAAAAAAAGAATTTCTTGGGCTAGGCATGATGGTGCACACCTTTGACCCCAGCACTCCAG
AGGCAGAGGCTGGTGGATCTGCCCCGTCTACAGAGCAAGCTCCAGGGTAGCCTGGGCTGT
TGGGGGGGAAAAAAAAAAAAAAAAAACAGAAGGAAAAAGGGAATTTCTTGTTTCTGGAGC
GATGACTCAATATGCTTATTGCTTTTATGCAGGAGCCCACTTCTCTTCCCAGCACTCAGG
TCAGGAGGCTCACAACTGCCTGTAAGTCCTTTTCCTGGGGGATACACTGCCCTCTTATGG
CCTCTATAGACACTGCACTCGGGTGCACATATCCACAAGGAGAAACACCCATGCACATAA
TTAAAAATACATTTTAAAAATGGTAGTCAGTGGTCACAGCACTCTTAACACCTTGCCCTC
CCAGAGAAGCCAAGTATATCCTAGTTGACATCACTAGCTCTTTATGGCAGATGTGGCCTG
TCTAGTTCCTGCTACAAATATTGCTGCAGTATCTGTGGATGTGAGGAGTCACGGCGTACC
TGTGCTGGTCAGAGGTCAACTCTCAGGAGTTGGCTCTCTCCCGCCACTCTATGGGTCCTG
GAGATGGAACCCCAGGTCACCAGACTTGGCAAGTGAGCAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Ncoa2 (ENSMUSG00000005886)
Transcript ID ENSMUST00000081713
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1394 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information