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Target CDS Information

Gene Symbol (Gene ID) Tmeff2 (ENSMUSG00000026109)
Cross Reference
CCDS CCDS14939.1
EMBL AB017270, AB041565, AK029307, ...show all
Fantom 4631423D02, 4832418D20, 4932418H01, ...show all
GO GO:0016021
goslim_goa GO:0005575
MEROPS I01.969
MGI_trans_name Tmeff2-001
OTTP OTTMUSP00000025449
OTTT OTTMUST00000053512
protein_id AAH34850.1, BAA87898.1, BAA95049.1, ...show all
RefSeq_mRNA NM_019790.4
RefSeq_peptide NP_062764
RefSeq_peptide_predicted XP_011236864.1
UCSC uc007axj.1
UniParc UPI00000E8855
Uniprot/SWISSPROT Q9QYM9
Vega_transcript OTTMUST00000053512, Tmeff2-001
Vega_translation 179216, OTTMUSP00000025449
Definition protein_id:ENSMUSP00000080533
translation:
MVLWESPRQCSSWTLCEGFCWLLLLPVTLLIIARPVKLAAFPTSLSDCQTPTGWNCSGYD
DRENDLFLCDTNTCKFDGECLRIGDTVTCVCQFKCNSDYVPVCGSNGESYQNECYLRQAA
CKQQSEILVVSEGSCATDTGSGSGDGVHEGSGETSQKETSTCDICQFGAECDEDAEDVWC
VCNIDCSQTNFNPLCASDGKSYDNACQIKEASCQKQEKIEVMSLGRCQDNTTTTTKSEDG
HYARTDYAENANKLEESAREHHIPCPEHYNGFCMHGKCEHSINMQEPSCRCDAGYTGQHC
EKKDYSVLYVVPGPVRFQYVLIAAVIGTIQIAVICVVVLCITRKCPRSNRIHRQKQNTGH
YSSDNTTRASTRLI

Chromosome 1
Length
Position(start - end)
257,532
50,927,948 - 51,185,481
Orient to Chromosome plus
Link Location : (1:50927948-51185481)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmeff2 (ENSMUSG00000026109)
Transcript ID ENSMUST00000081851
Reports
substitution
cSNPs9
Insertion162
Deletion198
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num7
non-synonymous num2
synonymous substitutions 50938245 (p.Ser105Ser), 50938269 (p.Glu113Glu), 50938275 (p.Tyr115Tyr), 51132149 (p.Val181Val), 51180301 (p.Cys265Cys), 51181740 (p.Cys291Cys), 51181815 (p.Arg316Arg),
non-synonymous substitutions 51181753 (p.Thr296Ala), 51181763 (p.His299Arg),
B6 transcript
(ENSMUST00000081851)
MVLWESPRQCSSWTLCEGFCWLLLLPVTLLIIARPVKLAAFPTSLSDCQTPTGWNCSGYD
DRENDLFLCDTNTCKFDGECLRIGDTVTCVCQFKCNSDYVPVCGSNGESYQNECYLRQAA
CKQQSEILVVSEGSCATDTGSGSGDGVHEGSGETSQKETSTCDICQFGAECDEDAEDVWC
VCNIDCSQTNFNPLCASDGKSYDNACQIKEASCQKQEKIEVMSLGRCQDNTTTTTKSEDG
HYARTDYAENANKLEESAREHHIPCPEHYNGFCMHGKCEHSINMQEPSCRCDAGYTGQHC
EKKDYSVLYVVPGPVRFQYVLIAAVIGTIQIAVICVVVLCITRKCPRSNRIHRQKQNTGH
YSSDNTTRASTRLI*
MSMv4 transcript
MVLWESPRQCSSWTLCEGFCWLLLLPVTLLIIARPVKLAAFPTSLSDCQTPTGWNCSGYD
DRENDLFLCDTNTCKFDGECLRIGDTVTCVCQFKCNSDYVPVCGSNGESYQNECYLRQAA
CKQQSEILVVSEGSCATDTGSGSGDGVHEGSGETSQKETSTCDICQFGAECDEDAEDVWC
VCNIDCSQTNFNPLCASDGKSYDNACQIKEASCQKQEKIEVMSLGRCQDNTTTTTKSEDG
HYARTDYAENANKLEESAREHHIPCPEHYNGFCMHGKCEHSINMQEPSCRCDAGYAGQRC
EKKDYSVLYVVPGPVRFQYVLIAAVIGTIQIAVICVVVLCITRKCPRSNRIHRQKQNTGH
YSSDNTTRASTRLI*
homology99.47 (375 / 375)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmeff2 (ENSMUSG00000026109)
Transcript ID ENSMUST00000081851
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CCAGGTAGCTGGGGATCCACAGACAAGGTGTAAAACGCCCAGGTCTAACG
CCCAATCACTCCAAGCTCTCCTCCGGGATGCCGCTTCGCTGTGGATTCGCCCTGTAACCC
ATTCTCAGCTTGGATGCAGAGAAGCCTCTCGCTGCTCCTCCGGCCTCCTGTCCCGACCAA
AATTGACCTTCCAACAACATTTTGTTGAACCTTTTAGACAGCCCCACAAATAGGTTCCGG
TCTGTACCTTACCAAAGAGCTCCAGGGAAAGAGAATCAAATCTAGCAGGCTGAGCTGCGG
AGAGCCTGGAAGGGATAGGAGGCACAGGGAGAATGGGGAGAGCCAGCGAAACTGGCTGCT
CCAGCCTGGCGAGCACCGTCGGGCTTGCTCGGGGAGCTAGCTGCTGCTGCTGCTTTAAGC
CACCAGAGTCTTTTGGCTCTCGCACTGCCGCCTCTTGCCCTCTTTTCTCTGCCACCGCCT
AGAGAAGCATCCTAATGCTTCTTAAGCTACCAGGACATGCCCAGCCTGGATCTCTTTCCC
GGACCGGCGGCGCCAACGGGACGCCCTCTGCTCCCTACCCGCTTCCCCTATTGCCCTGTG
GCTGCGGGTCCTCCACCTACTCCGCCCCCACCACATCCAGCTGGAAGACAAGGCCACCCA
GCCGCAGCGGGTGCTGTCAGCCCGGGGTCACGCACAGAAGAAAGGCGCGAGCCTGGACCT
CGCACACAGTAGGGGGCGTCATGGAGCAGAGAAGCCAGGCAAGTGGGAGAAAGAACGTGG
GAGTAGCCGCCCTGAAGCCTGAGCTTCTCCCAGGAGCCATCCCGCCTAGACCCACTCGGG
TTAGAGCCTAGAGAACTAGCCCATCTGTGGCATCAGTGGCCGCCTCCTCCTTGCACCTCC
TCACCGACCCCTCCCTCCCGGGACCTGCATCCCGCTCCGCCAATCAGAGTCCGACTGCCG
CTTCCCACGTGACCCCAGGCGGGCTAAGGACCTGCTGCTTCCCAAACGCC
1 EXON 1 50,927,519 50,928,119 - 1 601
AGAGGGATGCGGGCGGCAGAGCGCGAGAGGCGGCGGCTGGGCTGCGGGGCGCTGTGACTG
TCCCTCCACCCAGTCTGGTCGCGCTCTTCTCTTCGGCCGATTGGCCGCCTCCTCTCCGCA
CCCTGGTTTCTGTCTCCTGCTCCTCCTTTGCCCCGACCCTGTTCCTTATGGCAGCAGCTC
CTTGCATCGGGGGCGCAGCTTCTCAGCGGACTATCCTCTCACTCCGCAGGCTGAGCCCGG
TCACTGGATGTTGCTGAAACTCCGGAGATCATGCTCTCCTTTGGTCGCAGTATCACCGCC
GGCTGTCCCTGCCGCCGCCCCCTCCTCTGCTGCCGCGGTCCGCGGGATGCTCAGTAGCCC
GCTGCGTGGCCCCTGCGATCCCGTGTTCTTCAGAAGCCTTTGGTTGCTGCAGAGTTGCGC
GAAGTAGTCATGGTGCTGTGGGAGTCCCCGCGGCAGTGCAGCAGCTGGACACTTTGCGAG
GGCTTCTGCTGGCTGCTGCTGCTGCCCGTGACGCTGCTTATCATAGCCCGCCCGGTAAAA
CTCGCTGCTTTCCCTACCTCCTTAAGTGACTGCCAAACGCCCACCGGCTGGAACTGCTCC
G
INTRON 1 - 2 50,928,120 50,930,548 2,429
GTAAGTCCAGACCCTCAGCCCTCTA..........CTGGAGCATTCTTTTTCAACTTGAG
2 EXON 2 50,930,549 50,930,658 1 0 110
GTTACGATGACAGAGAAAATGATCTCTTCCTGTGTGACACCAACACCTGTAAATTTGACG
GGGAATGTTTAAGGATTGGAGACACTGTGACTTGCGTCTGTCAGTTCAAG
INTRON 2 - 3 50,930,659 50,938,212 7,554
GTAAGATATCTGATATTTGCATCTT..........TTTTTTTCCTCTCTTTGTTCTTCAG
3 EXON 3 50,938,213 50,938,342 0 1 130
TGTAACAGTGACTACGTGCCTGTGTGTGGCTCTAATGGAGAGAGCTACCAGAATGAATGC
TATCTGAGGCAAGCTGCCTGCAAACAGCAGAGTGAGATACTTGTGGTCTCAGAAGGATCC
TGTGCTACAG
INTRON 3 - 4 50,938,343 50,943,196 4,854
GTAGGCACAAATGTTCCTGAAATGG..........GAACTGTTTTCTCTTTTCTTCCCAG
4 EXON 4 50,943,197 50,943,223 1 1 27
ATACAGGATCGGGATCTGGAGATGGAG
INTRON 4 - 5 50,943,224 51,071,467 128,244
GTAGGAGGAGTTGCTGCTCTCCTTT..........TTCACGTATGATTTCTGTCCCACAG
5 EXON 5 51,071,468 51,071,564 1 2 97
TCCATGAAGGCTCTGGCGAGACCAGTCAGAAGGAGACATCCACCTGTGACATTTGCCAGT
TTGGGGCAGAGTGTGATGAAGATGCTGAGGATGTCTG
INTRON 5 - 6 51,071,565 51,132,142 60,578
GTAAGAGGCTGCTTTGGTTTCTCAA..........GTGTATTATTTTGCTCTTCCTTTAG
6 EXON 6 51,132,143 51,132,291 2 1 149
GTGTGTTTGCAACATAGACTGTTCTCAAACCAACTTCAATCCCCTCTGTGCTTCTGATGG
GAAATCTTATGATAATGCATGTCAAATCAAAGAAGCGTCATGTCAGAAACAGGAGAAAAT
TGAAGTCATGTCTCTGGGTCGATGTCAAG
INTRON 6 - 7 51,132,292 51,133,058 767
GTAATGTTCATAGCAAAATTTCATT..........TTTTATTGTTAATTTTTTAACATAG
7 EXON 7 51,133,059 51,133,118 1 1 60
ATAACACAACTACAACCACTAAATCTGAAGATGGGCATTATGCAAGAACAGATTATGCAG
INTRON 7 - 8 51,133,119 51,180,251 47,133
GTATGTAAAATTTCCTAGGACTAGA..........TACTTGCTTTTATCTGTATTCACAG
8 EXON 8 51,180,252 51,180,375 1 2 124
AGAATGCTAACAAATTAGAAGAAAGTGCCAGAGAACACCACATACCTTGTCCAGAACATT
ATAATGGTTTCTGCATGCATGGGAAGTGTGAACACTCCATCAATATGCAGGAGCCATCTT
GCAG
INTRON 8 - 9 51,180,376 51,181,736 1,361
GTAACATTTTCTTTCTTAAACTTTT..........TAAGAAGCTGTTGTCCTCCTTCCAG
9 EXON 9 51,181,737 51,181,895 2 2 159
ATGTGATGCTGGTTACGCTGGTCAACGCTGTGAAAAGAAGGACTACAGTGTTCTCTACGT
TGTTCCTGGCCCTGTCCGCTTCCAGTACGTCTTGATTGCAGCTGTGATTGGAACAATTCA
GATTGCTGTCATCTGCGTGGTGGTCCTCTGCATCACAAG
INTRON 9 - 10 51,181,896 51,185,384 3,489
GTCAGTAACGGGACTTGGGCATCAC..........ATCTGTAAACTTTCCAACCTTCTAG
10 EXON 10 51,185,385 51,187,270 2 - 1,886
GAAATGCCCCAGAAGCAACAGAATTCACAGACAGAAGCAAAATACAGGGCACTACAGTTC
AGACAACACAACAAGAGCATCCACACGGTTAATCTAGAGGGAGCATGTTTCCCAGTGGCC
GGACAACCAACAGCTTGGACTACACAATACAGTATTAGAGACAAAAGAATAAGACAAGAT
CTACACATGTTGCCTTGCGTTTGTGGTAATCTACACCAATGAAAACATGTACTACAGCTA
TATTTGATTATGTATGGATATATTTGAAATAGTATACATTGTCTTGATGTTTTTTCTGTA
ATGTAAATAAACTATTTATATCACACAATATAGTTTTTTCTTTCCCATGTATTTGTTATA
TATAATAAATACTCAGTGATGAGAACAAATGGCATTCCTAAACTTGCAGTAATTCATAGC
TGTAAGCACAGTCCAACTGTCATGGGCTACGCAGACAGCTGTATTTCATCCCTCTGTGCA
TCTTCAGACAACACATTAGTTTGCACAGGAATCTGTAGCTAGATTTTGAGTGATTCCACG
ATCAAGGGATATACAGGTTATTGGAAAAAAGAAAAAATAATTTAGTTTATTGAGGAAGCA
TAAGATATGTCATATCCTTGAATCATCTCTGCTTCATCTACTTTCTTCCCTGTCTTTCAT
TGTCATTCCCAGAACAGAAAAATCTCTGGCATATAAGTTACAAAAGGGAAGAATGGAAGT
GTTTTGTGGCTCAAAATAAAATGCAAAAAAAAGATATTTGTCTTTACTGAGAAGCAACAT
AACTATCTTAGTTAAATAATCTACCAGGGGGCGGGGTCTGAGAAAGGTATCCACTAGGTG
TATAAACAGTGGTCAAACCTATTCTGTTTCTGTTTCTGCAAGCAGAAAAAAAAAGCTAAG
AGTACATTGTAACTGTGTCAGTAAGTATGAGCCCAAACTGTGGCTTCTTAGAAGACCCTT
GCTGTATTTGTATCTTATTTGAAAAGAATTTAGACTACCAAACAAATGCCCCCACGAACA
GTTTTATAGCCCAAAGAGTACTGTTATTTGAAACTGAAAAACAAAAAGACAATGTTTTAT
GATAATGGAGAGAGATAAGTTTTAAACGTATTTACATAAGAAAGAAAATCCCTAAGAATC
TAGAGGACCTCCATGAGAGCTGCTTTCAACCCCTATGAGATACGAGCAGACAGGTATGAA
TGGTCACATTGCTTGGGGAAAGAAAATTGAGAACATTCTCAAGAAATAAGATGAAATACC
CAATTAAATAATCTCCTTATTATCATTTACCTCTGAGTAGTTTCTGTGGCACATGTGGAT
GATTTAAATAAAGCTTTATTTGTCTTCCTCAAATGACTTCTTCATGGACTAAAAGAAATG
GCATCCCCTCCTTTGTTAGAAACCAAAAAACACATAGCAATCCAAAATGTTCTGGATATA
AACTATTATATGAAAAATAAGGGTCTGAGGTGAAATTTAAACTACCTGTTAATATATAAT
AAAGGTGACAATCTACATAAGACTTAGGACTTTGAAAACTGTGTTTTTCTAAATTAAGTC
ATAAATTTGAAAATTTGACATAACCATCATGCAAGTGTTGCTATGAATCACTCTCTTGAT
AGATAGATATGACAAATCCCTGCTAATCTGTGTGTGTAATTTGTTTAACATGCACAGAGA
TGTAAGTGGCCCTAGTATTCTTTATATGATAACAACTATAGCAAATAAATCCTTTCTTCT
TCCAAAAGAAGAAGGGAAAATGTACTATTCCTAGTGAGGCATAGGTTTAAAGTAACAATT
TCACTGACCTTTGCTTTCAAAAATATGAACTGACTGATTTTGTTCCATGTTTACTTATCA
CTCTATATAAATTTTTATTCAAGATC
3' upstream sequence
ATAAAGCTAAGTGTTGAGAGAGTCTTTTATACCTTTCTGCCCGCTTCTATGCCGACCTAC
GCCATGAAAGAACTGCTTTTAAAACTTGCATAATGAATCCTAAGTGAAGATTTGCTGTAT
GCTTGGTGCAATTTCTGTTCCAAGGGAAATGCAAGTAGAGTTGGTGTCCCATCCACAGGA
ACTCACATCTCCCAGCAGGGAAGGAATCATCTGGCCTCGGCTAATACATCTCCCATCATT
TGCAATCTCATTCCTGGACCATTCCAATCATCTAAACAATTCTTCCTCACACAGAGCCAA
AGCCCATGGCTCTGCACTTGCTTCTCCTTTGATTCCTGTACTTCCTCTAGAGGACAAAGG
AACAATGGTCTGTATTTACAATATAAAGACAGAAATCATGTTCTCTTATTTCCCTCCAGA
ATTCTGCAATTATGTTCTTCTCCAAGCAAGCATTCCTAACTTCCTCCTCTGCGATTCATG
TGACACAGTTCCCACTTTCTCCTGCCATCTATGTCATTTTCTCCTGACTTTGCCTAGACT
CCACTTTGCCAATAGACCAATTAAAGTGTAGGGTTCACATGGCATAGTCTAACAAAGTGT
GATCTAACCAGTCCAACCTATAGAACAACTTGCAGAAAGCAAATTCTAAGAAACATACTC
CCTACTTGGCTCAGCTCCTCTTGTGCCCATAGCCTAACAGCGAATCCCTGAGCAAATCAT
CTCACATCTTATAACAGAATTCTGTCATCTTTAGGCCACCCAGTCATCTTAAGTCTAAGT
TTGCACATGTTCAGAAGAAAAGACGTTATGTTTTATTATTGCTGAGACACATTAACTATT
ATGGCTGTTTACTGTAAACATAAATTCTGATTACTTTTAAATAAACATCTAAAAATCCAC
TTCACATATTCAATATATACTTACAATACATTATGTATTTACTGAGAGCCACCAATTAGC
AACCCTGTGCTAGGCTGTGAGGTGATATTGAAAAGTATCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Tmeff2 (ENSMUSG00000026109)
Transcript ID ENSMUST00000081851
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 375 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information