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Target CDS Information

Gene Symbol (Gene ID) Rab23 (ENSMUSG00000004768)
Cross Reference
CCDS CCDS35532.1
EMBL AC134435, AC163668, AK016493, ...show all
Fantom 4931430N23, B930015O13
GO GO:0000045, GO:0000045, GO:0001843, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0003924, ...show all
MGI_trans_name Rab23-001
OTTP OTTMUSP00000024509
OTTT OTTMUST00000051907
protein_id BAB30270.1, BAC32949.1, EDL14436.1
RefSeq_mRNA NM_008999.4
RefSeq_mRNA_predicted XM_006495801.2, XM_006495802.2
RefSeq_peptide NP_033025
RefSeq_peptide_predicted XP_006495864.1, XP_006495865.1
UCSC uc007anw.2
UniParc UPI00000E883C
Uniprot/SPTREMBL Q9D4I9
Vega_transcript OTTMUST00000051907, Rab23-001
Vega_translation 178885, OTTMUSP00000024509
Definition protein_id:ENSMUSP00000085625
translation:
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ
NKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQKLKQQITED
PEQTHSSSNKIGVFNASVRSHLGQNSSSLNGGDVINLRPNKQRTKRTRNPFSSCSVP

Chromosome 1
Length
Position(start - end)
15,540
33,723,851 - 33,739,392
Orient to Chromosome plus
Link Location : (1:33723851-33739392)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rab23 (ENSMUSG00000004768)
Transcript ID ENSMUST00000088287
Reports
substitution
cSNPs6
Insertion21
Deletion29
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num1
synonymous substitutions 33734724 (p.Val88Val), 33734739 (p.Asp93Asp), 33734820 (p.Gln120Gln), 33734847 (p.Ser129Ser), 33734850 (p.Cys130Cys),
non-synonymous substitutions 33739273 (p.Arg199Gly),
B6 transcript
(ENSMUST00000088287)
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ
NKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQKLKQQITED
PEQTHSSSNKIGVFNASVRSHLGQNSSSLNGGDVINLRPNKQRTKRTRNPFSSCSVP*
MSMv4 transcript
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ
NKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQKLKQQITED
PEQTHSSSNKIGVFNASVGSHLGQNSSSLNGGDVINLRPNKQRTKRTRNPFSSCSVP*
homology99.58 (238 / 238)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rab23 (ENSMUSG00000004768)
Transcript ID ENSMUST00000088287
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGCCTTGAAAAACAAAAACCAAACGCCAAGCCAAACAAAAACAAAAAAAC
AAACCCCAAACTAAAAAGGAAGGAGAAAACAATGGGTTTGGCATGCAGTGTGTGCTTTTG
TGTACAGCACTTTGTTTTAACCTTAAGCTTCTGTCATTGTGTGTTGTTAATGCTTACAGC
TGCAGAGACTCCTTTTCATGGCTGTGTAGTGGTTCCATTACACAACGGAGAGGTATTAGT
TCGTTGACATCTTTTGGGTTATTTCCATTTGGAGAGTATTAGGACAGATGCAGCTATGGG
TGTCCTGACATCTGTTTGCCTGTATATCATAAGGACAGTTCCTATCAGCTGTGTGACCAA
GGAATGGGTGGATCACAGGGTGCACAAATGTAACAAACTCTCCTTCTCGTTCAAAGGAGT
TGCTCCAGCACACAAATTCAGCTAATTCACATTCTTTTCGACACTTGGTATTTTATATCA
CCCTCCCCTGTTTTATTTTGATGCATACAGAAACAACCAACGTTTATGTATTTTGAGACA
TAGTTTATTGTAGTTCAGGCTGGCCTTGAAATCCTGATCTTCATGCCACACCATCTTTCC
AAGTACTAGGATCACACACGTGTGTTTCCACGCCGCGTTTGAAGCGAGTTTGCTTTTTTG
CAGGACCTTTTTAAATTTGTGGGTTAGTTCTCTGAGTTGTTAGCCATCACGGTCTTCTAT
TTTGTTCAGTCATACCCTGCAAACAAATTATTTGTCTTCATTCATCACTTTTTTTTTCAC
ACTTCAGTGCTACCACGTGAGTCTCAGGTGGTGACAGACTTCTGAGGCCCCCGGATACCT
GACCCTGTGTAGGGAAACAAGGCGCACCTTCAGTAGGTTAGCACATCCTGCTCACCTTGG
TCTCCTTGGGTACCAAGGCCTGATGCTGTGCAAACCCAGCCCGCGCCTTCCCTGCCAGCG
CAGGGCGGGGCCGGTGCTGAGCATGCGCAGACCAGGTGGCGCATGCTCCT
1 EXON 1 33,719,895 33,720,173 - - 279
CAGCGCGGCGGGCGGGAGTCCGGCGCGCCCTCCATCCCCGGCGGCGTCGGCAAGGAGTAG
CTCGGTGAACCCGGATACTAATAAAGTTCGCTAGAGACTCATAATCGTTCTGAAAGAGCG
GAGCGGGTACGAGGCGTCCGCGGGGAGGAGCCGGGCTCGGTGCTGCGGGCTGTGCGTTCC
GGGCTCGGTGTTGCGGGCTGTGCGTTCCGGGCTCAGCGCTGCGGGTTGTGCGTTCCGGGC
TGCGGGCTCCGCGCTGAGGGTTCCGGGCTGCGGGCAGAG
INTRON 1 - 2 33,720,174 33,721,607 1,434
GTGAGTGCGGCCTGCGCGGCCTCGG..........TTTTGTTTTTGAACTTTAATTGTAG
2 EXON 2 33,721,608 33,721,699 - - 92
GGTGAAGAATTGTTTAGATTGAGAAGAGGACGTCGACTTCCCAAAACTGAGCCAGTGTGA
AACACAAGCTGGATGAACACGGTCAGATCTTG
INTRON 2 - 3 33,721,700 33,723,785 2,086
GTAAGGAGTGTAGGTTTGTATTGTT..........GAAACGATTCTGTTTTAAATTACAG
3 EXON 3 33,723,786 33,724,005 - 2 220
GTTTGAGGGAGACAGTGTGGTCTCCTGGAGTTAGAGCTGCTGCAGAAACTCTTCCTGTTT
CAAAAATGTTGGAGGAAGATATGGAAGTGGCCATCAAGATGGTGGTGGTGGGGAATGGGG
CGGTTGGAAAGTCGAGCATGATTCAGCGCTACTGCAAAGGCATTTTCACAAAAGACTACA
AGAAAACCATCGGCGTAGACTTTTTGGAGCGACAGATTCA
INTRON 3 - 4 33,724,006 33,724,933 928
GTACGTACCCAGCGCTTTATCCCTT..........GGAATAAACTCATCTCTTGTTTCAG
4 EXON 4 33,724,934 33,725,019 2 1 86
GGTTAACGATGAAGATGTAAGGCTAATGTTATGGGACACTGCAGGTCAAGAGGAGTTTGA
TGCAATCACGAAGGCCTACTATCGAG
INTRON 4 - 5 33,725,020 33,734,701 9,682
GTGAAATGTTTCTTCTGGCTAGATA..........ACAGTTTCCTTTTGTGATCTTGCAG
5 EXON 5 33,734,702 33,734,858 1 2 157
GAGCCCAGGCTTGTGTGCTTGTATTTTCTACCACAGATAGGGAATCTTTTGAAGCGATTT
CCAGCTGGAGAGAAAAAGTAGTAGCGGAGGTTGGAGATATACCAACCGCACTGGTGCAGA
ACAAGATCGATCTGCTGGATGATTCGTGTATCAAAAA
INTRON 5 - 6 33,734,859 33,736,799 1,941
GTAAGATGTCGCTCTTCTTGCCCGC..........TGCTTTGCTTTTGGTTGCTGTGCAG
6 EXON 6 33,736,800 33,736,882 2 1 83
TGAGGAAGCGGAGGGACTGGCCAAAAGGCTAAAGCTGAGGTTCTACCGGACGTCCGTGAA
GGAGGACCTCAACGTGAGTGAAG
INTRON 6 - 7 33,736,883 33,738,287 1,405
GCAAGTACTGCAGCCCAAGTCTTCG..........TACTGACTGTGTGTGTGTTTTCTAG
7 EXON 7 33,738,288 33,738,380 1 1 93
TTTTTAAATATTTGGCTGAGAAACACCTACAAAAACTCAAACAACAAATAACCGAAGATC
CAGAACAGACACACTCAAGTAGTAACAAGATTG
INTRON 7 - 8 33,738,381 33,739,252 872
GTAAGTGCGTGGTAAGAACCCAGCC..........ACTGTGCTTTCCCTCATTTACACAG
8 EXON 8 33,739,253 33,742,564 1 - 3,312
GTGTCTTTAATGCATCGGTCGGAAGTCACTTGGGCCAGAATTCAAGTTCCCTTAATGGTG
GCGATGTCATCAACCTTAGACCTAACAAACAAAGGACCAAGAGAACCAGAAACCCTTTCA
GCAGCTGTAGTGTACCCTAAACTGTTTCATGGAGGACAAAGCTGAATTGCACCGTGCAGT
TAACGGCACCGTGTGCGGGCTGTCCTGCGTGTGTCGTGGGCCTCTCACCACGCTCTGAAA
GCTGACATTGTAAGGCTGCTCTGCTGTGCTTCTCAGAATGTAGATGGCGCCCTCTGCTGG
AGAATTACTGCTCTGTGGACTCACTCTAGCTTTTTACCTTAGACGAGGCTTCTCCTGTTT
TTGAACGGACACCAGTGGAAATGTCAAAAACAGGTTTTGCTGAATTTTAAATTCTGAAAA
CAAAAACAACATGACTAACTACATCGGTAACCATTTTACCCTGATGGACCATGAGGGATG
GCGAGCATTGTTCTGACACTGGGCGTCGAGCTTTTCTGGAATGTTCGGTCTGAATGCTTA
AAGAACATATGGAAGGGAAACCCGGACTATGTCAGACTGCCCTGGTGTGTGTGTTGTCAG
AGGTACTCGTGCAATATCCGTGATGTGCGGACTATGGGGGTGTGCATGCAGACTCCTGGC
TCAGGCAGTAGGCCTGTGCCCTGGGAAAGGGAATGCAGATTCTAGTCAGTTCGCTCGCTC
GTACAACCATTGCGTATGTTTCTGGTCTCACCTGAGGCGTCCGGACATACTTTACAGAAC
GAACTTGGACCCAAGTGTGCCAAACACTACCGCTAATTTTTACACTACTTTCCTATTCAA
ATTTGTATTTATGACATCTTGTAGAGGCAGTTTCCTCTCCGACAGGTAGATGACAGGAAT
GTAAATGTCTGACTGCTCGGGCCTGTCCCTCCTGGGATTCTCCCAGAGCCTTCTCCATAG
CCACTGTAAGCAATGTGCCCGGTACACACAGCAGCCTGCAGCCACTCAGAAGGCCCTGTG
GAGCGCGTGCACACCAGCTTCTGGCTGCTGACCTGAGACCAAACTCTAAATTTCCAAGCT
GAAGGGGACCATCTTTGCAGAGTGATGGTCTTTGGTCCTGATCACAGATTTTCTGAAGCC
CTGCAACTCTAAGGCATCCTTTTGTTTACACTCGTAGTATAACATTTACCATTATTGCTT
AAGTTTTTCTGTGGCCTTTGGGGTACGTGGACCTTATCAGGAAGGATCGGTAAGAAGCGC
CTGTAAAGACCCGGTATGGGAAAGAAGGGGAAACGTGTGAGCTGGACACCAGTCTGCCTG
CCAAAGAGATAATATCATGAGTTCTACTAAAAACTCATTATCCTTAATCAGTCATTTTAT
TTAGAAAATATCAATAACCCGTTTCCACAGTCCTGGTTTTCATGTACTTCAAAATATATA
AAAGTGATATTTCTTGGAATGTGTGCTTTTCCTTTCTTTTTTTTTCTTTTTTTTACTAAA
ATATATAAATAGTTCCTATATTTCTCTTGTCTTTTTTTTCTTTAAAGTTTACCCTTGGCA
TACCACCCATCCTGCCCAGCACAGGTTCCTGTTGCGAGCAGAGGTCGCTGAGCGCCCTCC
CTCCATGGTGGTCCACATGCTTGCTTTTCCCATTGGCATCCCAAGCAGTCAGGATCATCT
GTGTTGTCAGCTGTTAGCGCCCCTGGTGCAGGGTAAGGTGGGGGACTTGGATCCACACAG
TGGTGCCTGCTGTGAGACGTAATTTTTTTCCTCTTCAAACACAGACTCCTCAGTTTTTAC
ACAAAGTAAATTTGTTGGCAAATAAATTAGTTGACCCTTTTAATGGCATTGGCAGAAAAT
TCATTCCTTATAGAACATTGTAGCTTTATTTGTAGCCACTAAATGCATGGTAAAAAGGTG
TGTGGTCTGTCTCTTTAAAACAGTGTCTGGTGATGGCTGCCGTTTCCTTAATATTTGTTA
GTTTGTCTCCCCGTCCCCCTCCCTCTCCCTCTCCTGGAGCTGAGGACTGAACCCAGGTAA
GTGCTCTACCACTGAGCTAAACCCCAGCCCCTTCCTTAATATTTGTAACAGAAGTTTATG
TGTTTTGTTTTATCCATTTTTTATGGGAGCATTTGTTACACATTTGGTTTTTACTTTGCA
CCACTGTATTTTCTACCTAACTTAAAAAGGTCTAAAATCAGCCACAGGTAATATTAATTT
ATCAATATATTCAATTCTGAAACCCTCAAAGGCCACATTATTGGTTTCTTCTGTGACTGT
AACGTTTATGAACTCTGGGCCACCAGACCTTTGTGCTCTAAGTAACTTTTGCAGTGTCAC
CGGTTCTTAGTGGCGGGCACAGAGCTGTGAAGTCATTGCCATATCTAAGAGTTCCTCAGG
TTTCTGCAGTCTCGGCCTAAGAAGGAGATAGTTTATAAAACAGCCCATATACATACAGCA
GTTCAAATAAAAGCAGGTTGAACTGTTTCTTCTCCACTCAAGGTGACCATACACATGGAG
ATTTCAAATTCCAGCACTACCACAGGGAGCGTGTGTGACCCCTCCGCTGCCGAGTGAAGT
GGGGCGGATGCTCCTGACTTGTCTTGGCAGAGCTGAGAACTCGGGTGTGGCCCTCCTGTC
TTTCTGAGGGTTTAGGATGGGGAGTTGGCCTTAGAACCCGATGCTGCCCCCTGAGGCGCT
CTTGTAATCTGAGATGCTGCTTGCCTCTGGAGGATCCTGGTGGCTGTGGTGAGTGCCCTG
GGAGCACCTCAGAGAGATGTGTGGGCTGCAGGGAGCCCACAAGGGCAGAGCTTTGGCTTC
CATAGCCTTAGGTGAGCAGATGGCTTTAGTCACACTAACAGTCACGTCGAACGTGCTGTT
GCTCCTAAGAGTTTCACGTATAAAGCTGAAAAATACATCATACAAATGAAGCTGTCTGCA
CACAGGTAAACAAAACCCCAGCAGGGTCTGAAATGCCCAGGTAGCCAGCGCCCAGATGGC
AGACTGATTCGGCCAAAAGAGTCTTGGTTACTGCCACTTTTCTGTTGTCACTTGAAGTAT
CTATAGTAGGATGTTGATAAATGGTATTTTAAAAATAAAATCTTTGGGTCAAAGGAAAAA
CTTAACCCCTTCTATATTTTTGTTACTAATAAATAATGCTTTTGTAAATCCGAATAGAAA
ACTACTTGTATGTTTTCCTATTGAGTGGTACTTAACGCCTTTGGGGTTAATTTTAAAATG
TACTACTTGATTAAAATTTCCACAAAGTTGAATTCCAATAACTCAAAAAAATAAAACATT
TCAAAGCTAGAA
3' upstream sequence
TGAATTGTGTGTGGTGTGTGTGATGTGAGCCAGCAGAGTGGGGTGGGATGCTCAAAGGAG
CCAGGTGTGGGGCAGTGGGAGGCCATCCTTGGCTACAGAGTTCACCAGCATGAGAGCTTT
CATTCATAAATTAGCAGATGGGACTCCCTCAAACATCAGAATATCCTAGAAACAAGTCCC
ACGGAGCTACTTTGAATATGAATACGCTCACCGTCTGGGCATCGGTTAGTGTCACCTAGT
AGAGCCCTGCTTTAGGTGGTTTTGCTACAAACGCTTACTTTCACGACTAGTTGTTAAAAG
AGTCATGTTTTTGTCTTGAGGCCTTGGGTCTCCCACACTACTATTCTACCTTCTGGTGTA
AACTAACATAGAGCTTAGTCGGTGTGTCAGACACCTGGCTCAGCCACCCTCTCCTTTACA
CCTCAAACCAGCATCACCTATGGGCAAGAGCTCAACCGCGCGCCCCCTGCTGGCCAAAAG
GTGCATTGGCTGCTCACACCGTCGTCTCTGCAGAACATTCTGCTCTGTGCAGCTCATCTC
ATTTCCTTGTAGGAGCAAACTAAGCTTAAACACACTCATGTCCCCGTTGCTACCGCCTCC
AAATCTGCAGCTGTTCCTACCTCATTTTGCATACTTGGGGACTTGTGTTGCTCAGCTTTC
CAAATAGCATCATATAGACTTGAGATGTATCAGCATTTTTCAGGATCAGTCATTTGAAAA
TGATCAATCATGTGGACTAGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCA
GAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGAT
CCAGTGCCCTCTTCTGGTGTGTCTGAAGAAGCCAAGTGTACTCATAAATTAAAATTTTTT
TTATTTTTTATTTTATTTTATTTTTTAAATCAATCGTGACTTTCAGGTCCCTCTGTGCTT
TCATTTCATCAAATATTCTGTTGCTGTAATAACGGTGGCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Rab23 (ENSMUSG00000004768)
Transcript ID ENSMUST00000088287
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 238 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information