MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cltb (ENSMUSG00000047547)

Cross Reference

CCDS	CCDS26533.1
EMBL	AK146816, AK159480
Fantom	I420020N05, I920061D20
GO	GO:0005515, GO:0005737, GO:0005886, ...show all
MGI_trans_name	Cltb-001
OTTP	OTTMUSP00000043470
OTTT	OTTMUST00000081304
protein_id	BAE27455.1, BAE35117.1
RefSeq_mRNA	NM_028870.3
RefSeq_peptide	NP_083146

UCSC	uc007qom.1
UniParc	UPI00000E91C3
Uniprot/SPTREMBL	Q3TWZ9
Vega_transcript	Cltb-001, OTTMUST00000081304
Vega_translation	214496, OTTMUSP00000043470

Definition

protein_id:ENSMUSP00000089198
translation:

MAEDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLA
SGAGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAA
SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQL
CDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR

Chromosome

Length
Position(start - end)

17,392
54,593,871 - 54,611,264

Orient to Chromosome

minus

Link

Location : (13:54593871-54611264)
/

Detail Map

name	Higd2a (ENSMUSG00000025868)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Higd2a note : HIG1 domain family, member 2A [Source:MGI Symbol;Acc:MGI:1914294]

name	Cltb (ENSMUSG00000047547)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cltb note : clathrin, light polypeptide (Lcb) [Source:MGI Symbol;Acc:MGI:1921575]

name	Higd2a (ENSMUSG00000025868)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000026986

name	Cltb (ENSMUSG00000047547)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000091609

name	Cltb (ENSMUSG00000047547)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000140142

name	Cltb (ENSMUSG00000047547)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000049575

name	Higd2a (ENSMUSG00000025868) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26532.1 Uniprot/SWISSPROT:Q9CQJ1 RefSeq_peptide:NP_080209 RefSeq_mRNA:NM_025933.3 Vega_transcript:Higd2a-001 Vega_transcript:OTTMUST00000081337 UCSC:uc007qol.1 Fantom:1500016M15 Fantom:2010110M21 EMBL:AK005269 EMBL:AK008387 EMBL:BC021471 GO:GO:0003674 GO:GO:0005739 GO:GO:0005743 GO:GO:0016021 GO:GO:0043066 GO:GO:0055114 GO:GO:0097250 MGI_trans_name:Higd2a-001 Vega_translation:214495 Vega_translation:OTTMUSP00000043496 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006461 goslim_goa:GO:0007005 goslim_goa:GO:0008150 goslim_goa:GO:0022607 goslim_goa:GO:0043226 goslim_goa:GO:0065003 protein_id:AAH21471.1 protein_id:BAB23921.1 protein_id:BAB25641.1 OTTP:OTTMUSP00000043496 OTTT:OTTMUST00000081337 UniParc:UPI0000022714
definition	note : transcript_id=ENSMUST00000026986 protein_id : ENSMUSP00000026986 translation : MAAPGPVSPEAPFDPSKPPVIEGFSPTVYSNPEGFKEKFIRKTRENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQGFTVVAILLGLAASAMKSQA

name	Cltb (ENSMUSG00000047547) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26533.1 RefSeq_peptide:NP_083146 RefSeq_mRNA:NM_028870.3 Vega_transcript:Cltb-001 Vega_transcript:OTTMUST00000081304 Uniprot/SPTREMBL:Q3TWZ9 UCSC:uc007qom.1 Fantom:I420020N05 Fantom:I920061D20 EMBL:AK146816 EMBL:AK159480 GO:GO:0005515 GO:GO:0005737 GO:GO:0005886 GO:GO:0030118 GO:GO:0042277 GO:GO:0043231 MGI_trans_name:Cltb-001 Vega_translation:214496 Vega_translation:OTTMUSP00000043470 protein_id:BAE27455.1 protein_id:BAE35117.1 OTTP:OTTMUSP00000043470 OTTT:OTTMUST00000081304 UniParc:UPI00000E91C3
definition	note : transcript_id=ENSMUST00000091609 protein_id : ENSMUSP00000089198 translation : MAEDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASGAGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR

name	Cltb (ENSMUSG00000047547) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cltb-004 Vega_transcript:OTTMUST00000081307 Uniprot/SPTREMBL:F7BHJ0 EMBL:AC155262 GO:GO:0005198 GO:GO:0005737 GO:GO:0005802 GO:GO:0005886 GO:GO:0006886 GO:GO:0008150 GO:GO:0030125 GO:GO:0030130 GO:GO:0030132 GO:GO:0032050 GO:GO:0043231 GO:GO:0060170 GO:GO:0072583 MGI_trans_name:Cltb-004 Vega_translation:214497 Vega_translation:OTTMUSP00000043472 goslim_goa:GO:0003674 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005794 goslim_goa:GO:0005886 goslim_goa:GO:0005929 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000043472 OTTT:OTTMUST00000081307 UniParc:UPI0001889CEA
definition	note : transcript_id=ENSMUST00000140142 protein_id : ENSMUSP00000122336 translation : EANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNSKHHCPARCPSRERPRSTWALLGQRSSCFRQSGTSSGSCHTQPVLFL

name	Cltb (ENSMUSG00000047547) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q6IRU5 RefSeq_peptide_predicted:XP_006517481.1 Vega_transcript:Cltb-003 Vega_transcript:OTTMUST00000081306 UCSC:uc007qon.1 Fantom:2310046E19 Fantom:4833419E16 Fantom:B230331K14 EMBL:AK009844 EMBL:AK029382 EMBL:AK045989 EMBL:BC070404 GO:GO:0005198 GO:GO:0005737 GO:GO:0005802 GO:GO:0005886 GO:GO:0006886 GO:GO:0008150 GO:GO:0030118 GO:GO:0030125 GO:GO:0030130 GO:GO:0030132 GO:GO:0032050 GO:GO:0043231 GO:GO:0060170 GO:GO:0072583 MGI_trans_name:Cltb-003 Vega_translation:214498 Vega_translation:OTTMUSP00000043471 goslim_goa:GO:0003674 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005794 goslim_goa:GO:0005886 goslim_goa:GO:0005929 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH70404.1 protein_id:BAB26539.1 protein_id:BAC26430.1 protein_id:BAC32563.1 OTTP:OTTMUSP00000043471 OTTT:OTTMUST00000081306 Reactome:R-MMU-157858 Reactome:R-MMU-162582 Reactome:R-MMU-190828 Reactome:R-MMU-190873 Reactome:R-MMU-195721 Reactome:R-MMU-196025 Reactome:R-MMU-199991 Reactome:R-MMU-199992 Reactome:R-MMU-3858494 Reactome:R-MMU-4086400 Reactome:R-MMU-421837 Reactome:R-MMU-432720 Reactome:R-MMU-5099900 Reactome:R-MMU-5653656 UniParc:UPI000024ECA2
definition	note : transcript_id=ENSMUST00000049575 protein_id : ENSMUSP00000053371 translation : MAEDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASGAGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADTIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR

name
type	STS
link
xref	UniSTS_NUM:160314 UniSTS:AA690237 WI_MRC-RH:274649
definition	note : map_weight=1 standard_name : AA690237

name
type	misc_feature
link
xref
definition	note : contig AC155262.2 75073..168429(1)

name	Cltb (ENSMUSG00000047547)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081305 Vega_transcript:OTTMUST00000081305 MGI_trans_name:Cltb-002 OTTT:OTTMUST00000081305
definition	note : retained_intron note : transcript_id=ENSMUST00000146301

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cltb (ENSMUSG00000047547)
Transcript ID	ENSMUST00000091609

Reports
substitution
cSNPs	1
Insertion	17
Deletion	19
SNPs	+1kb 54611686(c.-422C>A), 54611831(c.-567C>T), 54612289(c.-1025T>A), 54612356(c.-1092T>C), 54612582(c.-1318T>C), 54612937(c.-1673T>G), 54613683(c.-2419C>T), 54613843(c.-2579A>G), 54613882(c.-2618C>A), 54614155(c.-2891T>C), 54614210(c.-2946G>A), 54614493(c.-3229T>C), 54614538(c.-3274A>G), 54615465(c.-4201T>C), 54615488(c.-4224C>T), 54615524(c.-4260C>T), 54615559(c.-4295A>C), 54615693(c.-4429T>C), 54615907(c.-4643A>G), 5'UTR CDS 54611217(c.48G>C), 3'UTR 54592571(c.1300T>C), 54592613(c.1258T>G), 54592716(c.1155T>C), 54592751(c.1120G>A), 54592827(c.1044C>T), 54592886(c.985A>G), 54593093(c.778T>A), 54593276(c.595T>C), 54593299(c.572A>G), 54593864(c.7G>A), INTRON 54594228(c.465-186G>A), 54594273(c.465-231A>G), 54594385(c.465-343T>G), 54594573(c.465-531C>T), 54594700(c.465-658C>A), 54595057(c.465-1015A>G), 54595064(c.465-1022A>G), 54595082(c.465-1040C>T), 54595127(c.465-1085A>G), 54595128(c.465-1086T>C), 54595152(c.465-1110A>T), 54595278(c.465-1236T>G), 54595343(c.465-1301C>T), 54595367(c.465-1325T>A), 54595459(c.465-1417T>G), 54595529(c.465-1487A>G), 54595618(c.465-1576G>A), 54595669(c.465-1627A>G), 54595697(c.465-1655C>A), 54595725(c.465-1683G>A), 54595749(c.465-1707A>G), 54595899(c.465-1857G>T), 54596135(c.465-2093A>G), 54596370(c.465-2328C>T), 54596415(c.464+2307A>G), 54596468(c.464+2254T>C), 54596583(c.464+2139T>C), 54596734(c.464+1988G>T), 54596973(c.464+1749A>G), 54597355(c.464+1367C>T), 54597618(c.464+1104A>G), 54597801(c.464+921C>G), 54598131(c.464+591C>T), 54598171(c.464+551C>G), 54598174(c.464+548G>A), 54598191(c.464+531T>C), 54598313(c.464+409A>G), 54598355(c.464+367C>T), 54598362(c.464+360G>A), 54598421(c.464+301G>T), 54598444(c.464+278T>G), 54598465(c.464+257C>T), 54598497(c.464+225A>G), 54598540(c.464+182C>T), 54598565(c.464+157A>G), 54598623(c.464+99T>A), 54598710(c.464+12C>T), 54598889(c.353-56G>C), 54599036(c.352+8C>G), 54599192(c.235-31C>A), 54599266(c.235-105G>C), 54599335(c.235-174T>A), 54599336(c.235-175A>G), 54599411(c.235-250A>G), 54599528(c.235-367T>C), 54599589(c.235-428T>C), 54599714(c.235-553A>G), 54599803(c.235-642G>A), 54599978(c.235-817A>G), 54600000(c.235-839A>T), 54600433(c.235-1272C>T), 54600696(c.235-1535G>A), 54600751(c.235-1590T>C), 54600903(c.235-1742A>G), 54601024(c.235-1863C>T), 54601035(c.235-1874C>A), 54601637(c.235-2476G>A), 54601818(c.235-2657C>A), 54601870(c.235-2709A>G), 54602433(c.235-3272T>C), 54602511(c.235-3350T>C), 54602846(c.235-3685C>T), 54602879(c.235-3718C>T), 54602895(c.235-3734C>T), 54603019(c.234+3625C>G), 54603033(c.234+3611G>A), 54603034(c.234+3610T>C), 54603063(c.234+3581C>T), 54603181(c.234+3463C>A), 54603190(c.234+3454G>A), 54603608(c.234+3036A>G), 54603771(c.234+2873T>C), 54604030(c.234+2614G>A), 54604226(c.234+2418A>G), 54604275(c.234+2369G>A), 54604288(c.234+2356A>G), 54604386(c.234+2258T>C), 54604510(c.234+2134C>T), 54604540(c.234+2104T>C), 54604614(c.234+2030T>C), 54604729(c.234+1915C>T), 54604781(c.234+1863G>A), 54604877(c.234+1767T>C), 54604887(c.234+1757C>T), 54605020(c.234+1624T>C), 54605097(c.234+1547G>A), 54605126(c.234+1518T>C), 54605465(c.234+1179G>T), 54605478(c.234+1166C>T), 54605551(c.234+1093G>A), 54605885(c.234+759G>T), 54605889(c.234+755G>A), 54605970(c.234+674A>C), 54605983(c.234+661T>C), 54606247(c.234+397A>G), 54606255(c.234+389A>G), 54606256(c.234+388C>T), 54606414(c.234+230C>T), 54606436(c.234+208G>A), 54606437(c.234+207G>A), 54606453(c.234+191G>T), 54606497(c.234+147T>C), 54606498(c.234+146C>T), 54606627(c.234+17T>C), 54606851(c.188-161G>A), 54607186(c.188-496C>T), 54607323(c.188-633G>A), 54607366(c.188-676C>T), 54607400(c.188-710A>G), 54607486(c.188-796C>T), 54607508(c.188-818A>T), 54607510(c.188-820G>A), 54607845(c.188-1155C>T), 54608125(c.188-1435A>G), 54608129(c.188-1439G>A), 54608194(c.188-1504T>G), 54608223(c.188-1533C>T), 54608299(c.188-1609A>G), 54608311(c.188-1621A>G), 54608524(c.188-1834C>T), 54608745(c.188-2055G>T), 54608746(c.188-2056A>C), 54609093(c.187+1985T>G), 54609216(c.187+1862G>T), 54609231(c.187+1847C>T), 54609366(c.187+1712C>G), 54609426(c.187+1652A>G), 54609897(c.187+1181A>G), 54610101(c.187+977C>T), 54610187(c.187+891A>T), 54610656(c.187+422G>A), 54610808(c.187+270T>C), -1kb 54587469(c.6402A>G), 54587520(c.6351T>G), 54587539(c.6332G>A), 54588018(c.5853C>T), 54588070(c.5801T>G), 54588079(c.5792A>G), 54588165(c.5706G>A), 54588246(c.5625A>T), 54588537(c.5334A>C), 54588912(c.4959G>A), 54589350(c.4521G>T), 54589647(c.4224A>G), 54589968(c.3903G>A), 54590161(c.3710A>G), 54590194(c.3677G>A), 54590248(c.3623T>C), 54590254(c.3617C>A), 54590498(c.3373C>T), 54590499(c.3372G>A), 54590514(c.3357C>T), 54590516(c.3355C>G), 54590895(c.2976T>C), 54591023(c.2848T>C), 54591157(c.2714T>C), 54591426(c.2445A>G), 54591745(c.2126G>T), 54591811(c.2060A>T), 54591839(c.2032G>A), 54591907(c.1964G>T), 54591955(c.1916C>T), 54592017(c.1854A>G), 54592068(c.1803C>T), 54592082(c.1789A>T), 54592094(c.1777A>G), 54592101(c.1770T>C), 54592149(c.1722T>A), 54592177(c.1694G>A), 54592313(c.1558C>G),
Insertions	+1kb 54611643 (c.-380_-379insCGCCG), 54611979 (c.-716_-715insAAGAAACAAAA), 54613655 (c.-2392_-2391insT), 54614318 (c.-3055_-3054insTGTGCG), 54614742 (c.-3479_-3478insCCCC), 54615124 (c.-3861_-3860insG), 5'UTR CDS 3'UTR 54592466 (c.1403_1404dupAG), 54592693 (c.1177dupT), 54593849 (c.16_21dupACGGCC), INTRON 54594999 (c.465-958_465-957insGCAGA), 54601818 (c.235-2660_235-2658dupAAA), 54602114 (c.235-2954_235-2953insCG), 54603816 (c.234+2823_234+2827dupCTGAA), 54606437 (c.234+206_234+207insT), 54610187 (c.187+890_187+891insTCTTA), -1kb 54589350 (c.4520_4521insTT), 54591515 (c.2355_*2356insCTT),
Deletions	+1kb 54614895 (c.-3634_-3632delGGT), 54616046 (c.-4786_-4783delCACT), 5'UTR CDS 3'UTR 54592862 (c.1008delG), 54593162 (c.708delT), INTRON 54594052 (c.465-14_465-11delACCT), 54595358 (c.465-1317delC), 54595504 (c.465-1466_465-1463delTCTG), 54598463 (c.464+258delC), 54602696 (c.235-3537_235-3536delCT), 54605755 (c.234+886_234+888delGAG), 54607768 (c.188-1079delC), 54609857 (c.187+1220delC), -1kb 54588184 (c.5679_5686delGTTTGTTT), 54588936 (c.4930_4934delACATA), 54589146 (c.4721_4724delTTTT), 54589510 (c.4359_4360delTT), 54591960 (c.1910delG), 54592017 (c.1853delC), 54592019 (c.*1851delC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	54611217 (p.Pro16Pro),
non-synonymous substitutions
B6 transcript (ENSMUST00000091609)	MAEDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLA SGAGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAA SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQL CDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR*
MSMv4 transcript	MAEDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLA SGAGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAA SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQL CDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR*
homology	100.00 (212 / 212)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cltb (ENSMUSG00000047547)
Transcript ID	ENSMUST00000091609


..........CATGTGGATCTTTATGAATTTGAGGCCGGCCTTATCTACAGAGTGAGCTC
CAGGAACAGCCAGGGATACATGGAGAAACCCTGTCTTGAAAAACAAAAACACAACCAAAA
AAGATACTGTATTTTTGAAAAAGGTCTCCGGGTAGTGGTGGCGCATGCCTTTAATCCCAG
CACTTGGGAGGCAGAGGCTGTTAGATTTCAGAGTTCGAGGCCAGCCTCGTCTTCAGAGTG
AGTTCCAGGACAGCCAGGGCTATACAGAAAAACAGTCTCGAAATACAAAAAAAAAAAAAA
AAAAAAAAAAAAATCACTACTTTGAAGCCAGCCTCAGCTATACAAGAATTTGAGGTCAAA
CAGGCTACTAAAAAACAAAACAACAACAACAAAAACCGCGAAAGTAATTGCAATGTGCAA
TGCGAGTTTGGCATACAATCTGCTGTCACAATACGTATATTAATTACCAAAGAAAAAAGC
AGGCTCCACCTGTACTGTACTGAGTAATCAACGGGAACCTAACTAATAATGGGACAAACT
GACCCTCTGCTCTAAGAACTAGAGAAAGAGCTCAAATTGAAAGACAAAACAATCAGCCAG
TTAGTTGCCTTAAGGAACATCAATGTCACCAGACAGGGAGAAAGAGGAACAGTCCCTGAT
TTCAGGGGATCATCACACAGATAGGGCGGCGGGATGCTTTACTCAGTCCTGAGAGAACAA
GGCTCTGCTGTGCGCGCCTGGCACTCAAGCCTTTCCCAGCCTCAGCTCCCTCCTCCTACG
CAGGAAGAGTACTCTTGTATCACGCAGCTCACAAAATCAGCTCTGGGAGAAACTTTTCGG
TTCAATGCACCCGGTGCCAGCCCAGTGCTGCTGGCACGCTCTGGAGCCGAAGGTGGGCTT
CGGGGGCTCGAACCGAGGGCGGGGCGACCACCCAGCCCCGCGGGCCCCGCCCTCGGCCGC
TGACGTCACCGCATTCCCGCCGCGACTCCTCCCGCCGCCGCTGCAGCCGC
AGTGACAGGCAAGCCGGGCGGGTGACGGGAAGTGCGGGCCGCGGGCGCGGGCGGGAGGTGACAGCAGCCACGCGGGGAAGATGGCTGAGGACTTCGGCTTCTTCTCATCGTCGGAGAGCGGGGCCCCCGAGGCCGCCGAGGAGGACCCAGCGGCCGCCTTCCTGGCCCAGCAGGAAAGCGAGATTGCTGGCATCGAGAATGACCCGGGTTTCGGGGCACCTGCCGCCAGCCAGGTGGCCTCTGCGCAGCCGGGACTCGCGAGCGGGG
GTGAGTCAGCGCAGCGGCCTGGAAC..........GAAACTGTCTCCTTGCTCTTTCCAG
CTGGTTCAGAGGACATGAGTACTACAGTCAATGGAGATGTGTTTCAG
GTAAGCAGAGGTGGGACGGACTGTC..........CAGGAACGCTGTGCTTTTGTTGTAG
GAGGCTAACGGGCCTGCCGATGGCTACGCTGCGATTGCCCAGGCGGACAGGTTGACTCAGGAGCCCGAGAGCATCCGGAAGTGGAGAGAGGAGCAGAAGAAAAGGCTGCAGGAGTTAG
GTGAGGGGACACCTGGAGGAGGGTG..........ATGCATTCTCCTGCGGGGCTCACAG
ACGCTGCCTCGAAGGTGACCGAACAGGAGTGGCGGGAGAAGGCCAAGAAAGACCTGGAGGAGTGGAACCAGCGCCAAAGTGAACAGGTTGAGAAGAACAAGATCAACAACAG
GTGAATGAAGGTCAGGGGATCTGAG..........CTGTCTTCTCTACCTTTACCTTCAG
GGCATCGGAAGAGGCTTTTGTGAAAGAATCCAAGGAGGAGACCCCGGGCACAGAGTGGGAGAAGGTAGCCCAGCTGTGTGACTTCAATCCCAAGAGCAGCAAGCAGTGTAAAGATGTGTCCCGCCTGCGCTCGGTGCTCATGTCCCTGAAGCAAACACCACTGTCCCGCTAGGTGCCCGTCACGAGAACGGCCGCGAAGCACATGGGCCTTGCTGGGGCAGAGGAGCAGCTGCTTCCGCCAGAGTGGAACTTCCTCTGGCAGCTGCCACACACAGCCTGTTCTGTTCCTCTGAATCTCTGGGAGCTAGGAAGTGGGACCCTTACCCCTTTCACCCCACAACTCCTTCCTGGTCCCCTGGCCCAGCCCCTCATGACTCCTGTCAGCCCACTCAATTGTGACTGTCCCTCCTGATGTATTTTTCTTGGCTTAAAGGGTGTGTTAACTCTTTTTACACTTATTTATTAGTATCCTCATTTCTCTGGAAGCCGCAACTGGTGTCAGCGCTCAGTTTGTGCATAGAATTTTCCTAGCTCCGTGTCCTTAAAAGGTGAGGATGTAGTCTTAGAAACCCAGAGCTCGCAGCTGGAAGCAGGAACCCCAACCTGTCTGTGTCTGCTGTCTGCCCTCCAAGAAGAAAGGCAAATTTTCACGAGACAGGGTCTGCAACCTTGCTCTCTGTGATTCTTTAACAAGTCTGAAGGTAGGGACTCTGCTGTCCTCATGTATAGCTGAGAAAACTAAGGCTCCCCAAACAGAATTGGCTTTCGTGTAGAAAGGAAGTGAGGCCAGCGTGCTCTAAGGCTGTGTCTAGGCCTGAGTAAGGGTGGCAAATACAGCATCCGCCCAACCTTCTTCCTCGAGAGTGACCAAGACCCTCTTAAGACATGCAGGCCTGCTGCAGTACAGATGTGCCTCCCTCTTCAGCTATTCCCCCCTGTGGACTTAGGAAAAGCAACAGTGACCACACCTTCTTCCCCTTCAGCAGAGGCCGTATAACAGGACTTTAAGCCATTACGATCTACATGGTGTTTGAAAAGATTTGGGTAATTGCTAACAGTATTAGTTCCCTAAGATTGCCATTAAAGAATACCAAAAAACCTGGCTGCCTTAGAGCATCAGAAATCTGTTGTCTCAATTCCGGAGGCTAAAAGTCCCGAATTTGGGAACGACCAAGCCACGCCCCCCAGAGATGCTAAGGCAGGACCTGTGCCTCTTGTAGCTTCTAGTAGCTCAGGTATCCTTTGGTTTGCAGATATAGGTCTCCAGTTTTGCTTACACCCTCACATGGCTATCTGTGTTCATCATTTTCCCATGTATAATTTGTGCGTCCAATTTTTTTTCTTTTTTTGGTTTTTTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCAATCTTTTTTTTTAAATATGGATACGAGGGGCTAGATAGATGGTTCAGTGGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGATCAATGCCCAGCAACTAACTACATGGAAACTTAAAACCATCTGTAATGGGATCTGATACCCTCTTCTGGCATGCGTGTGTACATGCAGAGAGAGAGAGGGGAGTGGGGAGAACTCCTAAATAAATTTTAAAACAATGGATACCAGTATTACTGGATTAAAGCCC
ACCTTAAAGACTGTATTTTAACTATTGATGGTCATGGCTGTAAAGTCCTATTGCCAAATA
AGGCCTAAAAAATTAAGAGTTGGAGTTGGACTTTTAAATGTATTTTAGGGGGTGGGGGCA
TCATAACACTAGGTGGACATTACCTTTAAATACGGCACCATCTTCAGCTCCTTATGCCCT
GTTCTTGCATCCTGAGGGCTTCACAATGCAGTGTTCCACACTGACAATATGCCTTGTGGT
TAAGATCATGAAGGAGATACAAACACCTAGCTCTAGTCACGGACCTTCCACTCAGAGATC
GAAAACGTGTCAGGGCCCTAGAAATGTATCTTTACTTTCTTCCCTTTCCCCTTCAGGAGG
TATTCAGAGAGGCAGGGTGACCCATGGGAGGATTCGGTTCCTCAAAGCAACACAGTGACT
ACAGATCACAAATGCCTTTGAGACGCCTGTGTCAAAAGCTGGAGTGGTAAAGAGATCAGC
AGAGTGGAGGGTCTCAGAGGAGGCTGCACCGGAGTAAGAGAAGTAGTCAAAGAATGGTGG
TGGTGTGTGTTTGAACATCCTAACTCACAACAGGACCACGACAGGCCTCTTCTACAGGCT
ACAGAAACTTGGAAATTGCTGGCAAACTTTCCCGTATTACATCAAACAGCTCACTTAATT
AGAATCCCAAGAATGAACATTTGGGAATCTCTACTTTTAACCAGTGCCCCAAGTAACTTG
ACAGTGCCGAGGAAAGTTTGGATAGCACTAGGCTCTATGTTCCTCTTTCACAACTGGAGA
ATAAACCTCCGGCCTCACAATCACTATGTACTGTACTGCTGAGCTGTACCCTCAGGCCAT
TTTAAATGATACAGAGTCTAAGTTACTCTACTGAGTGATCTTGCATTTTTTTTTTTTTCC
GAGACAGGGTTTCGAGACAGGCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAG
ACTAGGCTGGCCTCGAACTCAGAAACCCACCTGCCTCTGC..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CATGTGGATCTTTATGAATTTGAGGCCGGCCTTATCTACAGAGTGAGCTC CAGGAACAGCCAGGGATACATGGAGAAACCCTGTCTTGAAAAACAAAAACACAACCAAAA AAGATACTGTATTTTTGAAAAAGGTCTCCGGGTAGTGGTGGCGCATGCCTTTAATCCCAG CACTTGGGAGGCAGAGGCTGTTAGATTTCAGAGTTCGAGGCCAGCCTCGTCTTCAGAGTG AGTTCCAGGACAGCCAGGGCTATACAGAAAAACAGTCTCGAAATACAAAAAAAAAAAAAA AAAAAAAAAAAAATCACTACTTTGAAGCCAGCCTCAGCTATACAAGAATTTGAGGTCAAA CAGGCTACTAAAAAACAAAACAACAACAACAAAAACCGCGAAAGTAATTGCAATGTGCAA TGCGAGTTTGGCATACAATCTGCTGTCACAATACGTATATTAATTACCAAAGAAAAAAGC AGGCTCCACCTGTACTGTACTGAGTAATCAACGGGAACCTAACTAATAATGGGACAAACT GACCCTCTGCTCTAAGAACTAGAGAAAGAGCTCAAATTGAAAGACAAAACAATCAGCCAG TTAGTTGCCTTAAGGAACATCAATGTCACCAGACAGGGAGAAAGAGGAACAGTCCCTGAT TTCAGGGGATCATCACACAGATAGGGCGGCGGGATGCTTTACTCAGTCCTGAGAGAACAA GGCTCTGCTGTGCGCGCCTGGCACTCAAGCCTTTCCCAGCCTCAGCTCCCTCCTCCTACG CAGGAAGAGTACTCTTGTATCACGCAGCTCACAAAATCAGCTCTGGGAGAAACTTTTCGG TTCAATGCACCCGGTGCCAGCCCAGTGCTGCTGGCACGCTCTGGAGCCGAAGGTGGGCTT CGGGGGCTCGAACCGAGGGCGGGGCGACCACCCAGCCCCGCGGGCCCCGCCCTCGGCCGC TGACGTCACCGCATTCCCGCCGCGACTCCTCCCGCCGCCGCTGCAGCCGC
1	EXON 1	54,611,078	54,611,344	-	1	267	AGTGACAGGCAAGCCGGGCGGGTGACGGGAAGTGCGGGCCGCGGGCGCGGGCGGGAGGTG ACAGCAGCCACGCGGGGAAGATGGCTGAGGACTTCGGCTTCTTCTCATCGTCGGAGAGCG GGGCCCCCGAGGCCGCCGAGGAGGACCCAGCGGCCGCCTTCCTGGCCCAGCAGGAAAGCG AGATTGCTGGCATCGAGAATGACCCGGGTTTCGGGGCACCTGCCGCCAGCCAGGTGGCCT CTGCGCAGCCGGGACTCGCGAGCGGGG
	INTRON 1 - 2	54,606,691	54,611,077			4,387	GTGAGTCAGCGCAGCGGCCTGGAAC..........GAAACTGTCTCCTTGCTCTTTCCAG
2	EXON 2	54,606,644	54,606,690	1	0	47	CTGGTTCAGAGGACATGAGTACTACAGTCAATGGAGATGTGTTTCAG
	INTRON 2 - 3	54,599,162	54,606,643			7,482	GTAAGCAGAGGTGGGACGGACTGTC..........CAGGAACGCTGTGCTTTTGTTGTAG
3	EXON 3	54,599,044	54,599,161	0	1	118	GAGGCTAACGGGCCTGCCGATGGCTACGCTGCGATTGCCCAGGCGGACAGGTTGACTCAG GAGCCCGAGAGCATCCGGAAGTGGAGAGAGGAGCAGAAGAAAAGGCTGCAGGAGTTAG
	INTRON 3 - 4	54,598,834	54,599,043			210	GTGAGGGGACACCTGGAGGAGGGTG..........ATGCATTCTCCTGCGGGGCTCACAG
4	EXON 4	54,598,722	54,598,833	1	2	112	ACGCTGCCTCGAAGGTGACCGAACAGGAGTGGCGGGAGAAGGCCAAGAAAGACCTGGAGG AGTGGAACCAGCGCCAAAGTGAACAGGTTGAGAAGAACAAGATCAACAACAG
	INTRON 4 - 5	54,594,043	54,598,721			4,679	GTGAATGAAGGTCAGGGGATCTGAG..........CTGTCTTCTCTACCTTTACCTTCAG
5	EXON 5	54,592,401	54,594,042	2	-	1,642	GGCATCGGAAGAGGCTTTTGTGAAAGAATCCAAGGAGGAGACCCCGGGCACAGAGTGGGA GAAGGTAGCCCAGCTGTGTGACTTCAATCCCAAGAGCAGCAAGCAGTGTAAAGATGTGTC CCGCCTGCGCTCGGTGCTCATGTCCCTGAAGCAAACACCACTGTCCCGCTAGGTGCCCGT CACGAGAACGGCCGCGAAGCACATGGGCCTTGCTGGGGCAGAGGAGCAGCTGCTTCCGCC AGAGTGGAACTTCCTCTGGCAGCTGCCACACACAGCCTGTTCTGTTCCTCTGAATCTCTG GGAGCTAGGAAGTGGGACCCTTACCCCTTTCACCCCACAACTCCTTCCTGGTCCCCTGGC CCAGCCCCTCATGACTCCTGTCAGCCCACTCAATTGTGACTGTCCCTCCTGATGTATTTT TCTTGGCTTAAAGGGTGTGTTAACTCTTTTTACACTTATTTATTAGTATCCTCATTTCTC TGGAAGCCGCAACTGGTGTCAGCGCTCAGTTTGTGCATAGAATTTTCCTAGCTCCGTGTC CTTAAAAGGTGAGGATGTAGTCTTAGAAACCCAGAGCTCGCAGCTGGAAGCAGGAACCCC AACCTGTCTGTGTCTGCTGTCTGCCCTCCAAGAAGAAAGGCAAATTTTCACGAGACAGGG TCTGCAACCTTGCTCTCTGTGATTCTTTAACAAGTCTGAAGGTAGGGACTCTGCTGTCCT CATGTATAGCTGAGAAAACTAAGGCTCCCCAAACAGAATTGGCTTTCGTGTAGAAAGGAA GTGAGGCCAGCGTGCTCTAAGGCTGTGTCTAGGCCTGAGTAAGGGTGGCAAATACAGCAT CCGCCCAACCTTCTTCCTCGAGAGTGACCAAGACCCTCTTAAGACATGCAGGCCTGCTGC AGTACAGATGTGCCTCCCTCTTCAGCTATTCCCCCCTGTGGACTTAGGAAAAGCAACAGT GACCACACCTTCTTCCCCTTCAGCAGAGGCCGTATAACAGGACTTTAAGCCATTACGATC TACATGGTGTTTGAAAAGATTTGGGTAATTGCTAACAGTATTAGTTCCCTAAGATTGCCA TTAAAGAATACCAAAAAACCTGGCTGCCTTAGAGCATCAGAAATCTGTTGTCTCAATTCC GGAGGCTAAAAGTCCCGAATTTGGGAACGACCAAGCCACGCCCCCCAGAGATGCTAAGGC AGGACCTGTGCCTCTTGTAGCTTCTAGTAGCTCAGGTATCCTTTGGTTTGCAGATATAGG TCTCCAGTTTTGCTTACACCCTCACATGGCTATCTGTGTTCATCATTTTCCCATGTATAA TTTGTGCGTCCAATTTTTTTTCTTTTTTTGGTTTTTTTGAGACAGGGTTTCTCTGTATAG CTCTGGCTGTCAATCTTTTTTTTTAAATATGGATACGAGGGGCTAGATAGATGGTTCAGT GGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGATCAATGCCCAGCAACTAACTAC ATGGAAACTTAAAACCATCTGTAATGGGATCTGATACCCTCTTCTGGCATGCGTGTGTAC ATGCAGAGAGAGAGAGGGGAGTGGGGAGAACTCCTAAATAAATTTTAAAACAATGGATAC CAGTATTACTGGATTAAAGCCC
	3' upstream sequence						ACCTTAAAGACTGTATTTTAACTATTGATGGTCATGGCTGTAAAGTCCTATTGCCAAATA AGGCCTAAAAAATTAAGAGTTGGAGTTGGACTTTTAAATGTATTTTAGGGGGTGGGGGCA TCATAACACTAGGTGGACATTACCTTTAAATACGGCACCATCTTCAGCTCCTTATGCCCT GTTCTTGCATCCTGAGGGCTTCACAATGCAGTGTTCCACACTGACAATATGCCTTGTGGT TAAGATCATGAAGGAGATACAAACACCTAGCTCTAGTCACGGACCTTCCACTCAGAGATC GAAAACGTGTCAGGGCCCTAGAAATGTATCTTTACTTTCTTCCCTTTCCCCTTCAGGAGG TATTCAGAGAGGCAGGGTGACCCATGGGAGGATTCGGTTCCTCAAAGCAACACAGTGACT ACAGATCACAAATGCCTTTGAGACGCCTGTGTCAAAAGCTGGAGTGGTAAAGAGATCAGC AGAGTGGAGGGTCTCAGAGGAGGCTGCACCGGAGTAAGAGAAGTAGTCAAAGAATGGTGG TGGTGTGTGTTTGAACATCCTAACTCACAACAGGACCACGACAGGCCTCTTCTACAGGCT ACAGAAACTTGGAAATTGCTGGCAAACTTTCCCGTATTACATCAAACAGCTCACTTAATT AGAATCCCAAGAATGAACATTTGGGAATCTCTACTTTTAACCAGTGCCCCAAGTAACTTG ACAGTGCCGAGGAAAGTTTGGATAGCACTAGGCTCTATGTTCCTCTTTCACAACTGGAGA ATAAACCTCCGGCCTCACAATCACTATGTACTGTACTGCTGAGCTGTACCCTCAGGCCAT TTTAAATGATACAGAGTCTAAGTTACTCTACTGAGTGATCTTGCATTTTTTTTTTTTTCC GAGACAGGGTTTCGAGACAGGCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAG ACTAGGCTGGCCTCGAACTCAGAAACCCACCTGCCTCTGC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cltb (ENSMUSG00000047547)
Transcript ID	ENSMUST00000091609

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 212 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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