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Target CDS Information

Gene Symbol (Gene ID) Aff3 (ENSMUSG00000037138)
Cross Reference
CCDS CCDS69884.1
EMBL AC117789, AC122026, AC132381, ...show all
GO GO:0003690, GO:0003690, GO:0003700, ...show all
goslim_goa GO:0001071, GO:0003674, GO:0003677, ...show all
MGI_trans_name Aff3-002
OTTP OTTMUSP00000021301
OTTT OTTMUST00000047164
RefSeq_mRNA NM_001290814.1
RefSeq_mRNA_predicted XM_006495740, XM_011238443.1
RefSeq_peptide NP_001277743
RefSeq_peptide_predicted XP_011236745.1, XP_011236747.1, XP_011236748.1
UCSC uc007ast.2
UniParc UPI0000F2205C
Uniprot/SPTREMBL D3YYI6
Vega_transcript Aff3-002, OTTMUST00000047164
Vega_translation 179072, OTTMUSP00000021301
Definition protein_id:ENSMUSP00000092637
translation:
MDSFDLALLQEWDLESLCVYEPDRNALRRKERERRSQETQQDSGSFNSGYSLFSEPYKTN
KGDELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPGVPQTPVNKIDEHFGAESRAQP
QPSTVCSTASSTPAAVPVQQGKRGAMGWQKAGHPPSDGQQRAAQQGSLRTLLGDGVGRQQ
TRAKQVCNMETGLQTQERPPAMAAKHGGSGHCVQNFPPSLASKPSLVQQKPTAYVRPMDG
QDQAPDESPKLKSSTETAVHCTAYRGVPANKPESARAKAKLAKFSIPKQAEESRSGENNS
CVEEIIREMTWLPPLSAIQAPAKVEPSKFPFPNKDSQLVSSGHSNPKKADAEPGSPDNGA
SNTSTLEDDLKLSSDDEEGEQQAAQRTALRALADSSVVQQTNCRGSAPSSKGGGSSSSSG
GSSSSSDSESTSGSDSETESSSSSSESEGSKPPHCSSPEAEPASSNKWQLDKWLNKVNPH
KPPILIQNESHGPERNQYYTPPVKDEGQDCGKLPEICQASLRDKELKTTCKEEQRPRTAN
KAPGSKSVKQKSPPAAVAVTAAALPPAVPSAPTESAPAPTRRSAGKKPTRRTERTSAGDG
ANCHRPEEPVAPDTLGASVVGPLEPPKTRPCGNNRTGHRKELRSSVTCEKRRTRGLSRIV
PKSKEFIETESSSSSSSSDSDLESEQEEYVLSKAPTTTGSEQRLKEAASSNNNSNSNSST
SRASVGSINARTTSDIAKELEEQFYTLVPFGRNELLSPLKDSDEVRSLWVKIDLTLLSRI
PEHLSQEPGVLSAPSAKDTDSAPASHALDAPAEKTLPKSKRKRKCDNEDDYREIKKVQGR
KESASRLAASTNNTLSGNHCNVNVNSLAIPINKNEKMLRSPTSPLSDTCKHKYASEDLTS
SSRPHGNGLLTSASSNKEPKAESQLQTIAGDLTKASHNSSENGTLHSKSRPQTEPWSPGS
NGHRDCKRQKLIFDDMPRSADYFMREAKRMKHKADAMVEKFGKALNYAEAALSFIECGNA
MEQGPMESKSPYTMYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFR
LKRDHAVKYSKALIDYFKNSSKAAQAPSPWGSSGKSTGSPSPMSPNPSPASSVGSQGSLS
SSSGLSPSTIVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMG
PVTLHSSMEHLVQYSQQGLHWLRSSVHLS

Chromosome 1
Length
Position(start - end)
447,691
38,179,449 - 38,627,141
Orient to Chromosome minus
Link Location : (1:38179449-38627141)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Aff3 (ENSMUSG00000037138)
Transcript ID ENSMUST00000095027
Reports
substitution
cSNPs28
Insertion295
Deletion337
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num18
non-synonymous num10
synonymous substitutions 38181345 (p.Ala1161Ala), 38181393 (p.Leu1145Leu), 38186941 (p.Ala1065Ala), 38191206 (p.Pro1031Pro), 38193572 (p.Asp995Asp), 38203873 (p.Pro955Pro), 38207920 (p.Asn861Asn), 38207974 (p.Ser843Ser), 38209655 (p.Val790Val), 38209871 (p.Ser718Ser), 38209928 (p.Gly699Gly), 38209937 (p.Thr696Thr), 38210252 (p.Arg591Arg), 38210279 (p.Arg582Arg), 38218281 (p.Pro453Pro), 38218308 (p.Ser444Ser), 38535442 (p.Gly152Gly), 38535568 (p.Glu110Glu),
non-synonymous substitutions 38209875 (p.Asn717Ser), 38209884 (p.Ser714Asn), 38209887 (p.Asn713Ser), 38209890 (p.Asn712Ser), 38209893 (p.Asn711Ser), 38218309 (p.Ser444Tyr), 38218310 (p.Ser444Ala), 38535157 (p.Gly208Ser), 38535208 (p.Thr191Ala), 38535528 (p.Thr124Ser),
B6 transcript
(ENSMUST00000095027)
MDSFDLALLQEWDLESLCVYEPDRNALRRKERERRSQETQQDSGSFNSGYSLFSEPYKTN
KGDELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPGVPQTPVNKIDEHFGAESRAQP
QPSTVCSTASSTPAAVPVQQGKRGAMGWQKAGHPPSDGQQRAAQQGSLRTLLGDGVGRQQ
TRAKQVCNMETGLQTQERPPAMAAKHGGSGHCVQNFPPSLASKPSLVQQKPTAYVRPMDG
QDQAPDESPKLKSSTETAVHCTAYRGVPANKPESARAKAKLAKFSIPKQAEESRSGENNS
CVEEIIREMTWLPPLSAIQAPAKVEPSKFPFPNKDSQLVSSGHSNPKKADAEPGSPDNGA
SNTSTLEDDLKLSSDDEEGEQQAAQRTALRALADSSVVQQTNCRGSAPSSKGGGSSSSSG
GSSSSSDSESTSGSDSETESSSSSSESEGSKPPHCSSPEAEPASSNKWQLDKWLNKVNPH
KPPILIQNESHGPERNQYYTPPVKDEGQDCGKLPEICQASLRDKELKTTCKEEQRPRTAN
KAPGSKSVKQKSPPAAVAVTAAALPPAVPSAPTESAPAPTRRSAGKKPTRRTERTSAGDG
ANCHRPEEPVAPDTLGASVVGPLEPPKTRPCGNNRTGHRKELRSSVTCEKRRTRGLSRIV
PKSKEFIETESSSSSSSSDSDLESEQEEYVLSKAPTTTGSEQRLKEAASSNNNSNSNSST
SRASVGSINARTTSDIAKELEEQFYTLVPFGRNELLSPLKDSDEVRSLWVKIDLTLLSRI
PEHLSQEPGVLSAPSAKDTDSAPASHALDAPAEKTLPKSKRKRKCDNEDDYREIKKVQGR
KESASRLAASTNNTLSGNHCNVNVNSLAIPINKNEKMLRSPTSPLSDTCKHKYASEDLTS
SSRPHGNGLLTSASSNKEPKAESQLQTIAGDLTKASHNSSENGTLHSKSRPQTEPWSPGS
NGHRDCKRQKLIFDDMPRSADYFMREAKRMKHKADAMVEKFGKALNYAEAALSFIECGNA
MEQGPMESKSPYTMYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFR
LKRDHAVKYSKALIDYFKNSSKAAQAPSPWGSSGKSTGSPSPMSPNPSPASSVGSQGSLS
SSSGLSPSTIVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMG
PVTLHSSMEHLVQYSQQGLHWLRSSVHLS*
MSMv4 transcript
MDSFDLALLQEWDLESLCVYEPDRNALRRKERERRSQETQQDSGSFNSGYSLFSEPYKTN
KGDELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPGVPQTPVNKIDEHFGAESRAQP
QPSSVCSTASSTPAAVPVQQGKRGAMGWQKAGHPPSDGQQRAAQQGSLRTLLGDGVGRQQ
TRAKQVCNMEAGLQTQERPPAMAAKHGSSGHCVQNFPPSLASKPSLVQQKPTAYVRPMDG
QDQAPDESPKLKSSTETAVHCTAYRGVPANKPESARAKAKLAKFSIPKQAEESRSGENNS
CVEEIIREMTWLPPLSAIQAPAKVEPSKFPFPNKDSQLVSSGHSNPKKADAEPGSPDNGA
SNTSTLEDDLKLSSDDEEGEQQAAQRTALRALADSSVVQQTNCRGSAPSSKGGGSSSSSG
GSSSSSDSESTSGSDSETESSSSESESEGSKPPHCSSPEAEPASSNKWQLDKWLNKVNPH
KPPILIQNESHGPERNQYYTPPVKDEGQDCGKLPEICQASLRDKELKTTCKEEQRPRTAN
KAPGSKSVKQKSPPAAVAVTAAALPPAVPSAPTESAPAPTRRSAGKKPTRRTERTSAGDG
ANCHRPEEPVAPDTLGASVVGPLEPPKTRPCGNNRTGHRKELRSSVTCEKRRTRGLSRIV
PKSKEFIETESSSSSSSSDSDLESEQEEYVLSKAPTTTGSEQRLKEAASSSSSNNSSSST
SRASVGSINARTTSDIAKELEEQFYTLVPFGRNELLSPLKDSDEVRSLWVKIDLTLLSRI
PEHLSQEPGVLSAPSAKDTDSAPASHALDAPAEKTLPKSKRKRKCDNEDDYREIKKVQGR
KESASRLAASTNNTLSGNHCNVNVNSLAIPINKNEKMLRSPTSPLSDTCKHKYASEDLTS
SSRPHGNGLLTSASSNKEPKAESQLQTIAGDLTKASHNSSENGTLHSKSRPQTEPWSPGS
NGHRDCKRQKLIFDDMPRSADYFMREAKRMKHKADAMVEKFGKALNYAEAALSFIECGNA
MEQGPMESKSPYTMYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFR
LKRDHAVKYSKALIDYFKNSSKAAQAPSPWGSSGKSTGSPSPMSPNPSPASSVGSQGSLS
SSSGLSPSTIVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMG
PVTLHSSMEHLVQYSQQGLHWLRSSVHLS*
homology99.27 (1230 / 1230)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Aff3 (ENSMUSG00000037138)
Transcript ID ENSMUST00000095027
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CAGCCCCCAGGCTAAACTGCAGCTGAAAGCAGGTCTTGGAAGACGCTTCC
TTCCCGCCTCCTCTTTATTTCACTGAAGTTACTGGCTCCAGATATTTGAAACGATTTGTT
TTCAGCGCTGCCGTGGGCTGCACTGTTAACTCTCACCGCGCCTGGGGCGCCCAGGGCTTT
TCCTTCCTAGCGCCCACCCCAGATCTTCAAGAGTGCACACCTCCAGCCGCAGCGCCCTGC
GGGTTCCCCTTAATTTGCGGAGGACCAGAAAGTCCCAGCTGGACACGGGGCGAGGGCGAG
AGGCAGGGGTCTGCTTTGCTGCAGGCCGGCCTCGGCTCGGCACGGCATCCCCCTGCCCTC
GGCGCCGCTGCGCCGCTCCCTTTGGCTCAGAGGACGTCCCCCGCAACCCTCGGGGCCACT
GAGGGTCTGGAGAGATGGAGGGGCGCGGGTGAGGAGGGCGAGCCGGCAGTCCGGCCCGAG
AAAGGGCGCGGGACCCCGAGCAGCCGCACGGGGAGAGCGGGGAGCGCGGGGAGCGCAGGG
GCGCGCGGGGCGGGCGCGGCGCGGGGCTCAGGACGCGCGCGCGCGCCTCGGCCTCGCCCG
CGCACACGCGCCTCCCGGAGGAGAAAGAGGCGGGCGGGCGAGCGGGCGGGCGCAGAGCAC
CGCGCCGGCGGCTGCAGCGGGCCGGGCCGCCGCGAGGGAGGGGCGGAGGGGCGGGCGCAG
GCCGGGAGGGGGCGGCGGCGCGGCGAGAGAGCGAGCTCGCGGCTCTCGGCGAGTGTGGCT
GCGCGCGAGCCGGCGAGCGGGTGAGTGCGCCGGGCGGGCCCGGGAAGCAGGGGCCGCGGG
GGTGCCGGGCACTGAGAGCCGGGGGAGGGTGACTGGCGGGCAGGCGGGCAGGCGGGCGGC
GGCGGCTCGGGCGCGGCCGGGATGCACCTTAGCGGGCGCCTCTCGTTGCAGCGCGCGGGC
GGCCCGAGGCTCGGCAGCGGCGGCGGCGGACACGGCGGCGGCGGACACAG
1 EXON 1 38,627,089 38,627,185 - 2 97
CGGCGGCGGCGGACACGGCGGCGGCGGCGCTGACACCTCCCACCATGGACAGCTTCGACT
TAGCCCTGCTCCAGGAATGGGACCTCGAGTCGCTGTG
INTRON 1 - 2 38,536,947 38,627,088 90,142
GTGAGTCCCGGTGCTGGCCGCTGGG..........TTCTCTTTCCTTTCTCCTGGTGCAG
2 EXON 2 38,536,826 38,536,946 2 0 121
TGTCTATGAACCGGACAGGAATGCGTTACGGAGGAAAGAGCGAGAAAGAAGAAGTCAAGA
AACACAGCAGGACAGTGGCAGCTTTAACTCCGGTTACTCGCTCTTCAGCGAACCCTACAA
G
INTRON 2 - 3 38,535,724 38,536,825 1,102
GTAGATGGTTTTCAGCTGTTCACCT..........TCCTTGGATATTTTTCTTTCTCCAG
3 EXON 3 38,535,411 38,535,723 0 1 313
ACGAACAAGGGGGATGAACTCTCCAACCGGATCCAGAATACATTAGGAAATTATGATGAG
ATGAAAGACTTTTTAACTGATAGATCCAACCAGAGTCATCTTGTTGGCGTCCCCAAGCCA
GGTGTCCCTCAGACTCCCGTGAACAAGATAGATGAACATTTTGGGGCAGAGTCGAGAGCC
CAGCCCCAGCCCTCATCCGTCTGCAGCACTGCGTCCTCTACACCTGCAGCTGTCCCTGTG
CAGCAGGGCAAGAGAGGTGCCATGGGCTGGCAGAAGGCTGGTCACCCACCGTCCGATGGC
CAACAGAGAGCAG
INTRON 3 - 4 38,535,292 38,535,410 119
GTAAGGAGGGGCATGAGGCAGTTGC..........TCACTGCCTTCTTCTTCCAACTCAG
4 EXON 4 38,534,906 38,535,291 1 0 386
CGCAACAGGGCTCTCTCAGGACCTTGCTTGGAGATGGTGTTGGCAGACAGCAGACAAGGG
CCAAGCAAGTGTGCAATATGGAGGCGGGGCTTCAGACCCAGGAGAGGCCACCTGCAATGG
CAGCCAAGCACGGCAGCAGTGGACACTGTGTTCAGAACTTTCCCCCATCCCTGGCTTCAA
AACCCAGCCTGGTGCAGCAGAAACCAACTGCCTACGTGCGGCCAATGGATGGCCAGGACC
AAGCTCCTGACGAATCTCCTAAGCTGAAGTCATCCACAGAAACTGCTGTGCACTGCACAG
CCTACAGAGGGGTCCCGGCCAACAAACCAGAGTCAGCCCGAGCCAAGGCCAAGCTTGCCA
AGTTCAGCATCCCCAAGCAGGCAGAG
INTRON 4 - 5 38,406,544 38,534,905 128,362
GTGAGTTCATTGTCATTGCCTGACT..........TGATTTATCTCTCCTTTGCTTTCAG
5 EXON 5 38,406,496 38,406,543 0 0 48
GAGAGTAGATCTGGAGAAAACAACAGCTGTGTGGAAGAAATAATTCGG
INTRON 5 - 6 38,341,802 38,406,495 64,694
GTAAGGACGCTCTTTAAAATCTTCT..........ACACTGTTTTTAATCTCACCTCTAG
6 EXON 6 38,341,721 38,341,801 0 0 81
GAGATGACCTGGCTTCCTCCACTTTCTGCTATTCAAGCTCCTGCCAAAGTGGAACCAAGC
AAGTTCCCATTCCCAAATAAG
INTRON 6 - 7 38,329,909 38,341,720 11,812
GTGAGCGTGTGCAGCACTAGAGAGG..........TCATTGATATTTCTTGTCTTTTCAG
7 EXON 7 38,329,872 38,329,908 0 1 37
GACTCGCAACTTGTATCCTCTGGACACAGTAATCCAA
INTRON 7 - 8 38,320,164 38,329,871 9,708
GTAAGAATGCCTCTGTCCTTTTCTG..........TTTGTTTTTTTTTTGTTTTTTTAAG
8 EXON 8 38,320,112 38,320,163 1 2 52
AGAAAGCTGATGCGGAGCCAGGGAGTCCAGACAATGGCGCATCGAACACTTC
INTRON 8 - 9 38,269,762 38,320,111 50,350
GTAAGTGTCTTTCCAGTTCCTCTCT..........GTCCGAATCTCTTTGTCCCTTTCAG
9 EXON 9 38,269,710 38,269,761 2 0 52
AACTCTGGAAGACGACCTTAAGCTAAGCAGTGATGACGAAGAGGGTGAGCAG
INTRON 9 - 10 38,252,682 38,269,709 17,028
GTAAGACTTTCTCATGTGTAGATGA..........TAAACATCTCTCCCTTTTCTTCCAG
10 EXON 10 38,252,641 38,252,681 0 2 41
CAGGCAGCCCAGAGAACAGCTCTCCGCGCTCTAGCTGACAG
INTRON 10 - 11 38,218,456 38,252,640 34,185
GTACATTTTGTCATTTTTATGAACT..........CTTGGGGGGCCTGGTGGACTGGCAG
11 EXON 11 38,218,263 38,218,455 2 0 193
CTCCGTGGTTCAGCAGACCAACTGTAGAGGTTCGGCGCCATCCAGCAAGGGCGGCGGCAG
CAGCAGCAGCAGCGGCGGCAGCAGCTCCTCCAGCGACTCAGAGAGCACTTCCGGCTCCGA
CTCCGAGACGGAGAGCAGCTCCAGCGAGAGCGAGAGCGAGGGCAGCAAGCCTCCACACTG
CTCCAGCCCCGAG
INTRON 11 - 12 38,210,648 38,218,262 7,615
GTAGGCAGCGGCTGCAGACTCGAGG..........TTTGTCCCGGGTTTTCTGTTTTCAG
12 EXON 12 38,209,553 38,210,647 0 0 1,095
GCCGAACCTGCGTCCTCTAACAAGTGGCAGCTGGATAAATGGCTAAACAAAGTTAATCCT
CACAAGCCGCCAATTCTGATCCAAAATGAAAGCCACGGCCCGGAAAGGAATCAATACTAC
ACGCCGCCGGTGAAAGATGAAGGGCAAGACTGCGGGAAACTTCCTGAGATCTGCCAAGCC
AGCCTGAGGGACAAGGAGCTCAAGACCACCTGCAAGGAGGAGCAGAGGCCGAGGACCGCA
AACAAGGCCCCTGGCAGCAAAAGTGTAAAGCAGAAGTCCCCACCCGCTGCTGTGGCTGTG
ACCGCAGCTGCCCTCCCGCCCGCGGTGCCCAGCGCACCCACGGAGAGCGCGCCTGCGCCC
ACCCGCAGATCAGCAGGCAAGAAGCCCACCCGGCGAACCGAGAGGACCTCAGCCGGGGAC
GGTGCCAACTGCCACCGGCCTGAGGAGCCAGTGGCCCCAGACACGCTGGGGGCGAGCGTG
GTGGGACCCCTAGAGCCCCCCAAAACCAGACCCTGCGGTAACAACAGGACAGGCCACCGC
AAGGAGCTGCGCTCCTCCGTGACCTGTGAGAAGCGGCGCACGAGGGGGCTGAGCAGAATC
GTCCCCAAATCCAAGGAGTTTATTGAAACAGAATCTTCGTCTTCCTCTTCCTCCTCGGAC
TCAGACCTGGAGTCAGAGCAAGAGGAGTACGTCCTGTCCAAGGCTCCGACAACCACTGGA
AGCGAGCAGCGGCTGAAGGAGGCCGCCAGCAGCAGCAGCAGCAACAACAGCAGCAGTAGC
ACCTCCCGGGCTTCTGTGGGCTCCATCAACGCCAGGACCACCAGTGACATTGCCAAGGAG
CTAGAGGAACAGTTCTACACGCTGGTCCCCTTTGGCAGGAATGAACTACTATCTCCGCTA
AAGGACAGCGATGAGGTCAGGTCTCTCTGGGTCAAAATTGACCTGACCCTCCTGTCCAGG
ATCCCAGAACACCTGTCCCAGGAGCCTGGGGTCTTGAGTGCTCCTTCGGCCAAGGACACT
GATAGTGCCCCAGCCAGTCATGCATTAGACGCTCCTGCTGAAAAGACTTTGCCAAAATCC
AAGAGGAAACGCAAG
INTRON 12 - 13 38,208,031 38,209,552 1,522
GTAGGCCTAGAGTTGGGAGGAGCAG..........ATGGCTTCTGCTTATTATCATCCAG
13 EXON 13 38,207,906 38,208,030 0 2 125
TGCGACAACGAAGATGACTACAGGGAGATAAAGAAGGTCCAGGGAAGGAAGGAGAGCGCC
TCACGCCTCGCCGCCTCCACTAATAACACCTTGTCCGGCAATCACTGCAACGTGAACGTC
AACAG
INTRON 13 - 14 38,205,092 38,207,905 2,814
GTAAGCCTGTTCCCAGGAGGGTAGG..........GCTCCGTTGCTGTTTCTCTTTTCAG
14 EXON 14 38,204,890 38,205,091 2 0 202
CTTGGCAATACCAATAAACAAAAATGAAAAGATGCTCCGGTCGCCCACTTCGCCACTCTC
AGACACATGTAAACACAAATACGCCAGCGAGGACCTGACTTCTTCCAGCCGACCTCACGG
CAACGGGTTGTTGACTTCAGCGTCTTCCAACAAAGAGCCAAAGGCTGAGAGTCAGCTGCA
GACGATTGCTGGGGACCTCACG
INTRON 14 - 15 38,203,939 38,204,889 951
GTTTGTCAAGGCCCTTTCTTTCTAA..........GGCTTCTGTCTCATTTTTTATTTAG
15 EXON 15 38,203,811 38,203,938 0 2 128
AAGGCATCTCACAACAGTTCTGAAAATGGCACCCTCCATAGCAAGTCACGGCCCCAGACG
GAGCCGTGGTCTCCAGGTTCCAATGGCCACAGGGACTGCAAGAGACAGAAACTGATCTTC
GATGACAT
INTRON 15 - 16 38,193,630 38,203,810 10,181
GTAAGTTTTAATATGGTGAGGGGGA..........GGCATCTGATGTTCTCCTCTTACAG
16 EXON 16 38,193,566 38,193,629 2 0 64
GCCTCGAAGTGCAGATTATTTTATGCGAGAAGCCAAGCGGATGAAACATAAAGCAGATGC
CATG
INTRON 16 - 17 38,191,308 38,193,565 2,258
GTAAGACCCTTTCTTTCTAGACTTG..........ACACATCACCAATTCTGTTTGTCAG
17 EXON 17 38,191,171 38,191,307 0 2 137
GTGGAGAAGTTCGGGAAGGCCCTGAACTATGCCGAAGCTGCCTTGTCCTTCATCGAGTGC
GGAAACGCAATGGAACAAGGGCCAATGGAATCCAAGTCTCCGTACACCATGTACTCGGAG
ACAGTGGAGCTCATCAG
INTRON 17 - 18 38,187,008 38,191,170 4,163
GTAGGCAAGCCCCGCTTCCAGCAAG..........CTTTTTTATCTTTTTTTTTTTTAAG
18 EXON 18 38,186,936 38,187,007 2 2 72
GTATGCTATGAGACTAAAAACCCACTCAGGCCCCAATGCCACACCAGAGGACAAACAGTT
AGCTGCACTTTG
INTRON 18 - 19 38,185,419 38,186,935 1,517
GTAAGTATAACCCCAGCTCTGCAAA..........ACACGTTTCTCTTCTTCCCCTGCAG
19 EXON 19 38,185,325 38,185,418 2 0 94
TTACCGATGCCTGGCTCTCCTATACTGGCGGATGTTTCGACTCAAAAGAGACCATGCTGT
AAAATATTCAAAAGCACTTATCGACTATTTCAAG
INTRON 19 - 20 38,181,665 38,185,324 3,660
GTACTGCCTAGCAAATAAGCACCAT..........TGTACAAATTTTCATTTCCCTGCAG
20 EXON 20 38,181,615 38,181,664 0 2 50
AATTCATCGAAAGCTGCCCAAGCCCCATCCCCATGGGGGTCCAGTGGCAA
INTRON 20 - 21 38,181,484 38,181,614 131
GTAAGTTCACGTTCCCCAAATGCAG..........GGATTTTCTACCTCTCTTCTTCCAG
21 EXON 21 38,181,260 38,181,483 2 1 224
GAGCACTGGAAGCCCATCCCCCATGTCTCCCAACCCTTCTCCCGCCAGCTCCGTGGGGTC
TCAGGGCAGCCTCTCCAGCTCCAGCGGCCTATCCCCATCGACCATCGTCAGCATCCCCCA
GCGCATTCACCAGATGGCAGCCAATCACGTCAGCATCACCAACAGCATCCTCCACAGCTA
TGACTACTGGGAGATGGCTGATAACCTGGCCAAGGAAAACAGAG
INTRON 21 - 22 38,179,571 38,181,259 1,689
GTGTGTGCACAAGCCCTGGAGAATG..........CCTCAAACATCTCTCTGTCTCCTAG
22 EXON 22 38,177,326 38,179,570 1 - 2,245
AGTTCTTCAATGACCTGGATTTGCTCATGGGACCTGTCACCCTGCACAGCAGCATGGAAC
ACCTGGTCCAGTACTCCCAGCAAGGCCTGCATTGGCTTCGGAGCAGCGTACACCTGTCCT
AGGGACCACGCCTTTGAGCCAGACTGTGTTTTCTTCTCTTCAGTGGCTCAATGTTTCCGG
ACACTGTGCTACTGACATTCCCAGCCCAAACCACAGTGAACATCTCAGAGTCTAACAACG
ATGTTTCTCTGGGGTGTGTGTGTTTAGATGTGGGTTCGTACAAAGCTGCCTGTGTATGTG
TGTAAGATCAACAGCTCATCAAAATGTATTCCCTTTGTCTAGTTTCTATGATCCCAGGCT
AGACAGTGATTAGAGGTTCCTCATTGGAGAAAACCCATGCAGTACACACGTGCTCACACA
CTCAGACACATCCTCCCCGCCAGTGCTAAGCCATTGCCTTCTTGGAAAGTCCCACCGAGA
TCACATGCATTGCTGCACCTGGTGCACTCCTGCACCTGGAGAGCGTAACTGCCGGACGAG
TTGAACCTTTCTCTTATTATTGGTTCCTTTCAGTATTATATACAATTCCCCGATTACTTT
TGGTTGTTGTATATTAATGAGCAATTGATGAAACAAGCCAGTTACTTTTTGTGCCAGAAG
TTCACTAGAGTGCATGTTTCCAAACGCCTTTCCCCTCCCCTACTACCCTCCCCGACCCCT
CATTATCTACCAAACACATAAGCCAGTGGGATCCCACAAGCGTCCCTTGCCTTGTCCCCA
CATATGGCACCAGGATTCGGTAAAAGCTCAGCAACCCCACTAGCAACGGTGGCTGTTCCA
GTTCGGAATGAAAGTCTTCACCGGGTGGCAATGAGTCCTGCAGGCATAGACAGTCCCTCT
TTCTGCCACTGTGACTCTGTGGCTGTGGCCAGCCAACCCATTTCAAGTCTCTTCTTTCTA
CAGTAGCTTTCTTGCAACCGTCCTCAGCCAAACGACGACAGTGTCCAGAGTGTGCCGTCC
CTAGATCTGGCAGTTGCTTTGCAGACTCAGACACACTCACTGTTGTCACCGGCCTGATTC
TTGCTCGTCACACACCATGTGCGACTCCAGGCCTTGAGTGACATTTTGACTTGGGGGACA
TTTCTTTTTCAAGCTTTCATTAACAAGCTGCTTACAATGCAGGGAAAGTTATCCCTGCGA
TGATCAAAACTCGGTTTGGAGTAGCAACAACCAGAGTATCTTGCTTTTAATCTTCGCATT
TGGTGTGTTTTTGTCTTGACCATGGGTCTTGTCTGGTTTGTTTTGGTTTTGGTTTTGGTT
TATTTGTTTTTTTTTAATTGAGTTTGTTTTAGTTTTTCAGCATCTCATTTACGGTTTTTG
TCAGAAGTTTGTTTTCTCATGTTTTTTTCATCCCCAAACTTAGTCTTCTTATTAAATATG
TGTAGATCTGAAATATTAGTATAAAGTCCTGTAAACAAGGTACATCTTACAACACTTTAA
GAACAAACCATTGTCCTTGAGTTACTTGACAGAACTAGAGCAGATCAGCCAGAGGGAGAT
CAGCAAGGCCATCTGCAGACCCCTCCATTGTTCAAGGTGGCTGAGGTGTCACAAAGTGTG
TCTCCTTTGTCTCCCTGTGAGCCTGACTACATACACATACACATCACCGTCTGTCAGCTT
TGTCAGTAGGTGGCAAATAAGAATGCTCTCATTCCCCAGCTCCAGGAGTGGATGCAAAAC
TAGGCAAACAGTTGAGCACGGTTTGGTGATTTGCACCAAAGTGGATTGTAGAATTTGCAT
CTATCTGGCTTTCACCCTCAAACACTTGAAATTTTTAGCAGTCCATTGACTTCAATTGTT
TGGGACCAGAACTGTTTTTATAAGACGTTAGAATATTTGTGAATACATAATGAGGTATCT
TGGGGGAGAGGATTCAAGTCTAAACATAAATCTCATTTATGTTTTATAGAGACCCTGTAC
ACAGGAAAATAATGTCTGCAATATTGATTGTAAGCCATCCCGAGAGGTCAGGCATGGGAT
TTACCACTGGTATCATAGCACTGTACAAGAGGTTTTAGATTCTGGAGCAGATTAGCTTTG
AGATTCTTGAAGTGAGAAGGTTTTACCTCTGTTTCCATCTTTGTATTTATCTATACACCA
TGCTCCTTGCATCCCTTTCTCTGACTGTCGGCAGGTCTGTGATCCCATCCTGTGTTTAAA
GTCTGAATATACGAAATTGAATCAC
3' upstream sequence
CTTGTGTGCAGCACTGCGACTTTGTTCTAGTTACCCTTGGTGAATTCTGGCAAAGAGTTC
CAACTCTTGTATAGAGCCGTATCCTCAAGGGTCTCTGTGCAACCTTGGGGAGTGTCTCTG
ATCCTGCCTCACTTTAAAGTTACAAGCTCGGTTGTGACACTCACGCAATCCACATGCCTG
GGAAACCGATTAAATTGCAAAGGTGACTTCTGGCTGATTGTACCAGCACAGGTTTGACCA
ACACACTGATGACCAAACAAAACTTGTAGAGACTGGTCTGGGGTGGGGCTGGGGGGCTAG
GGGGTGTGGCACATAGGAGGGTGGCGTCACATAGTCAGAGCATGCAGGTCCTAGTCAAGT
TTCTTGCCCCATCCATGGAGCAGTGACAGGCCCAGTGTAGATAATTTTATTAAGAAACCG
TCTCGCATCTGATGGGGCTCAATGTTGGTCAGTCTGGTAAGGGGCCATCTTCCACTTGAT
GCCGTGCAAGTCCATCCACAACATGTTCCTTGTCTGAAGTTGGATTGCAAATAGAAACGT
CTTTCTTATGTGTTTTCTAAAGATCTATTTATTTATTTTATGTATGAGCACACTGTAGCT
GTACAGATGGTTGTGAGCCTTCATGTGCTTGTTGGGAATTGAATTTAGGACCTCTGCTTG
CTCTGGTCTGCCTCACTCCCTCCAGAAGATCATTACAAGTAGTTGTGAACCACCATGTGG
TTGCTGGGATGTGAACTCAGGATCTTCGTAAGAGCAGTCAGTGCTCTTACCTGCTGAGCC
ATCTTGCCAGCCCCTTTCTTATGTTTTCTGACTATAAAAATCCTACATGTTCATTATAGG
GATTCAAATAATGCTGAAATGTAGAAGATGCAAGCCTGTGGTTGCCTCACTCCCGAGATG
ACCGTGGCTCAGTGATGCTGTGTCTTTCCAGAGAGTTTTACATGCAAGCATAACATCTGT
CACCACGTGTTTCCATTGGAAGACATACTCTGACCTCAGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Aff3 (ENSMUSG00000037138)
Transcript ID ENSMUST00000095027
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1230 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information