top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Cross Reference
EMBL AC117188, AC125522, AC130211, ...show all
GO GO:0005515, GO:0005622, GO:0006461, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Rims1-001
OTTP OTTMUSP00000066642
OTTT OTTMUST00000120204
RefSeq_mRNA NM_001012623.1, NM_001012624.1, NM_001012625.1, ...show all
RefSeq_peptide NP_001012641.1, NP_001012642.1, NP_001012643.1, ...show all
UCSC uc029qnm.1
UniParc UPI0004621011
Uniprot/SPTREMBL E9PWP6
Vega_transcript OTTMUST00000120204, Rims1-001
Vega_translation 178831, OTTMUSP00000066642
Definition protein_id:ENSMUSP00000095417
translation:
MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRD
MAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRK
IGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNEDKV
VMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSR
SQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLS
EQNGKGGQKSERKRVPKSVVQPGEGTADERERKERRETRRLEKGRSQDYPDRLEKREDGR
VAEDEKQRKEEEYQTRYRSDPNLARYPVKAPLEEQQMRMHARVSRARHERRHSDVALPHT
EAAAAVSAETTAGKRAQTTARVSPPESPRARAPAAQPPAEHGPPPPRPAPGPAEPPEPRV
PEPLRKQGRLDPGSAVLLRKAKREKAESMLRNDSLSSDQSESVRPSPPKPHRPKRGGKRR
QMSVSSSEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPVTW
QPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVV
GHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHPPL
ESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQAT
DLPPRVDGRPRNPYVKMYFLPDR

Chromosome 1
Length
Position(start - end)
337,532
22,468,191 - 22,805,724
Orient to Chromosome minus
Link Location : (1:22468191-22805724)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Transcript ID ENSMUST00000097808
Reports
substitution
cSNPs5
Insertion245
Deletion256
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num2
synonymous substitutions 22533544 (p.Pro525Pro), 22533703 (p.Pro472Pro), 22538360 (p.Ala268Ala),
non-synonymous substitutions 22534045 (p.Asp358Glu), 22534140 (p.Ala327Thr),
B6 transcript
(ENSMUST00000097808)
MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRD
MAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRK
IGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNEDKV
VMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSR
SQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLS
EQNGKGGQKSERKRVPKSVVQPGEGTADERERKERRETRRLEKGRSQDYPDRLEKREDGR
VAEDEKQRKEEEYQTRYRSDPNLARYPVKAPLEEQQMRMHARVSRARHERRHSDVALPHT
EAAAAVSAETTAGKRAQTTARVSPPESPRARAPAAQPPAEHGPPPPRPAPGPAEPPEPRV
PEPLRKQGRLDPGSAVLLRKAKREKAESMLRNDSLSSDQSESVRPSPPKPHRPKRGGKRR
QMSVSSSEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPVTW
QPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVV
GHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHPPL
ESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQAT
DLPPRVDGRPRNPYVKMYFLPDR
MSMv4 transcript
MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRD
MAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRK
IGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNEDKV
VMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSR
SQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLS
EQNGKGGQKSERKRVPKSVVQPGEGTTDERERKERRETRRLEKGRSQDYPDRLEKREEGR
VAEDEKQRKEEEYQTRYRSDPNLARYPVKAPLEEQQMRMHARVSRARHERRHSDVALPHT
EAAAAVSAETTAGKRAQTTARVSPPESPRARAPAAQPPAEHGPPPPRPAPGPAEPPEPRV
PEPLRKQGRLDPGSAVLLRKAKREKAESMLRNDSLSSDQSESVRPSPPKPHRPKRGGKRR
QMSVSSSEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPVTW
QPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVV
GHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHPPL
ESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQAT
DLPPRVDGRPRNPYVKMYFLPDR
homology99.75 (803 / 803)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Transcript ID ENSMUST00000097808
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAAAGATTGCATTGAAGGGTACAATGCTAATTCGGGTTGCTGGATGTGTG
TATGTTGTGTGTGTGTGCACCAAAATTATCTAGGAACCCACACACAACTGTGGCTGTGCA
CACTTGCTGAGTAAAGCAGAAAGACATGGTGGCAGGAAGGGGAAAATAGACCTAGAGGGT
GTACCATCCTGCTGTTCTAAACCCTGTGGGTGCTCAAAAAGCATCAATGATGAAGACTGT
GGCGAGGATGAAGATGATTAAAGCAACCCATGGGAAAATAGGGTTGGGGAGGATGACATG
GACCAGGACCTGGGAGAGGGAGGATGACTCAGGGTGAGGGGTACCTTGGGAGAGATCAGT
GGAGTATGCACGTCGGCGAGCGTGGGGCGGGGGGAATGGCCAGGGCACGCGTGGCTCGGA
CCCGGGGAGTGGGTGGGTGGTGCCCGTGGGCGGAGCGGCTCCGGGACTGAGTGGCTGGCA
GCTTATGTCTGCGAGAGCAGCAGCATCACCCGGGAGCGAAGCTCCGAGACTCCGCCTAAC
TGACACCCAAACTCTCCCTCTCCCTCCCGCAGCCCCAAACTGGAGGCAGCGGAGCCCGCG
AGCAAGCAGCGTCGGGCGGCCCCGGCCCGGCCCCGCCCCCGGCCCGCCAGCCCAGCCCGC
GCCCGGCCGCCGTGCTCCGGAGCTCAGCGCCAGCCCTCGCCCTCTCGCCGAGCCTCCGCC
TGTCCGCCCCCGCCGGCCGAGGCTGGGCTGCGGGAGGCGGCCGGGCGGCCCCGAGCCTCG
CCAGGGCGACCCAAACAAAGGCAGCATCCGGGCTCGGCGGGAGGCAGAGCATCATGAGAG
ACTGGGTCCTCGCTGTCCCCGGCTCCGCTGCTGCTGCCGCTGCCGCCGCCGCTGCCGCCG
CCGGGAGGGCTTCGCTGTGAGCGTGGAAAGCAGGGGCGCAGCTGCGGGGCGTGAATCCGA
AAGGTGAGAGCCAGAGCCAGCGAGCCGAGGGGGCGGGCAGGCCACGAAAA
1 EXON 1 22,805,561 22,805,724 - 2 164
ATGTCCTCGGCCGTGGGGCCCCGAGGTCCTCGCCCACCCACGGTGCCTCCCCCTATGCAA
GAACTGCCCGACCTGAGCCACCTGACCGAGGAGGAGAGGAACATTATCATGGCAGTGATG
GACCGGCAGAAGGAAGAGGAGGAAAAAGAAGAGGCCATGCTCAA
INTRON 1 - 2 22,727,011 22,805,560 78,550
GTAAGCACCCCCCAACCCCCCAGGG..........TTGTGCTGTCTATCATGCGCCCCAG
2 EXON 2 22,726,930 22,727,010 2 2 81
GTGTGTTGTCAGGGACATGGCGAAGCCTGCTGCCTGCAAAACACCAAGAAATGCTGAAAG
CCAGCCCCATCAACCACCACT
INTRON 2 - 3 22,630,481 22,726,929 96,449
GTAAGTACAGCATTGGTTTTATTGA..........TGTCTTCTTCTCCCTTGCCTTGCAG
3 EXON 3 22,630,412 22,630,480 2 2 69
GAACATTTTCAGATGTGTCTGTGTTCCCAGAAAGCCAAGCAGCGAAGAGGGAGGCCCAGA
CAGAAACTG
INTRON 3 - 4 22,596,585 22,630,411 33,827
GTATTTCCTCTCCTTCCTGCTTTGG..........TTTCTCTCTCGTCTCTTTTGCCCAG
4 EXON 4 22,596,371 22,596,584 2 0 214
GAGATTGCATCAACAGTTTGAAAGCTACAAGGAACAAGTGAGAAAAATCGGAGAGGAAGC
CAGGCGTTACCAGGGCGAGCACAAAGATGATGCCCCGACGTGTGGAATCTGTCATAAGAC
AAAGTTTGCTGATGGATGTGGCCATCTCTGCTCCTATTGTCGCACCAAGTTCTGTGCACG
CTGTGGAGGCCGAGTGTCTCTGCGATCGAACAAT
INTRON 4 - 5 22,594,105 22,596,370 2,266
GTGAGTGTCCTGTGAACACAGCAGG..........TGCTTCCTTGGATGTTTTCCCAAAG
5 EXON 5 22,594,093 22,594,104 0 0 12
GAGGACAAAGTG
INTRON 5 - 6 22,538,624 22,594,092 55,469
GTTAGAATCCATGCTTTCTTTTCTA..........ATTTCTCTTTCTCTTCTCCAAATAG
6 EXON 6 22,538,286 22,538,623 0 2 338
GTTATGTGGGTATGCAATTTATGTCGAAAGCAACAAGAGATATTAACGAAATCTGGAGCG
TGGTTCTTCGGAAGTGGTCCTCAGCAGCCCAGTCAAGATGGGACTCTGAGTGACACGGCT
ACAGGTGCTGGATCTGAGGTGCCAAGAGAAAAGAAAGCTCGGCTCCAAGAGCGATCAAGG
TCTCAGACGCCCTTGAGTACAGCAGCTGTCTCTTCCCAAGACACTGCTTCCCATGGTGCA
CCACTGGACAGGAACAAAGGGGCAGAGCCCTCACAGCAAGCCTTGGGTCCTGAACAGAAG
CAGGCATCAAGGTCAAGAAGTGAGCCACCAAGGGAAAG
INTRON 6 - 7 22,534,241 22,538,285 4,045
GTAATAATTCACTAGCACTGTAAAC..........ATCAACTGTTCTCTGCGCATCACAG
7 EXON 7 22,533,399 22,534,240 2 1 842
GAAGAAGGCTCCAGGGCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGAGTGAGCGCAA
ACGTGTCCCCAAGTCTGTGGTGCAACCCGGGGAAGGGACCACGGATGAACGGGAGAGGAA
GGAGAGGCGGGAAACCCGCAGGCTGGAGAAAGGGCGCTCTCAGGACTACCCGGACCGGCT
CGAGAAACGCGAGGAAGGCAGGGTGGCTGAAGACGAAAAGCAGAGGAAGGAGGAGGAGTA
TCAGACTAGGTACCGCAGCGACCCGAACCTGGCTCGCTACCCGGTGAAGGCGCCGCTGGA
GGAACAGCAGATGCGCATGCACGCCCGGGTGTCCCGAGCGAGGCACGAGCGGCGCCACAG
CGACGTGGCGCTCCCGCACACCGAGGCTGCCGCCGCTGTGTCAGCCGAGACCACGGCGGG
CAAGCGCGCGCAGACCACCGCCAGGGTCTCTCCCCCGGAGTCCCCGCGCGCACGCGCGCC
CGCTGCCCAGCCTCCCGCGGAGCACGGGCCGCCGCCGCCGCGGCCAGCCCCGGGTCCCGC
AGAGCCGCCCGAACCGCGCGTCCCCGAGCCGCTCCGTAAGCAGGGCCGCCTGGACCCCGG
CTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGAAAGCGGAAAGCATGCTGCGGAACGA
CTCGCTGAGCTCCGATCAGTCCGAGTCGGTGCGGCCGTCCCCGCCCAAGCCACACCGGCC
CAAGCGGGGAGGCAAGAGGCGTCAGATGTCGGTGAGCAGCTCCGAGGAGGAGGGCGTGTC
CACGCCGGAGTACACGAGCTGCGAGGACGTGGAGCTGGAGAGCGAGAGCGTGAGCGAGAA
AG
INTRON 7 - 8 22,486,653 22,533,398 46,746
GTGAGCGCGGCTCGGAGGTGGAGAT..........CCTTTTGTCCCTTTTCACGTCACAG
8 EXON 8 22,486,588 22,486,652 1 0 65
GTGACTTGGACTACTGGTTGGATCCTGCCACGTGGCATAGCAGGGAAACGTCGCCTATTA
GTTCG
INTRON 8 - 9 22,484,753 22,486,587 1,835
GTAAGTTTTTTGACGGCGTATACAG..........TTTTTTAAACTTTATGTTTTGACAG
9 EXON 9 22,484,642 22,484,752 0 0 111
CATCCTGTAACGTGGCAGCCATCTAAAGAGGGGGACCGATTAATCGGCCGTGTTATTCTT
AACAAAAGAACAACCATGCCCAAAGAATCAGGTGCATTATTGGGTCTCAAG
INTRON 9 - 10 22,483,254 22,484,641 1,388
GTATGTATCCAGGTTTATAATGCTG..........GGCTCATGAATTTGTCACTTTGCAG
10 EXON 10 22,483,154 22,483,253 0 1 100
GTGGTTGGAGGAAAAATGACGGACTTAGGGCGTCTTGGTGCTTTCATCACCAAAGTAAAG
AAGGGTAGCCTGGCAGATGTTGTCGGACACCTAAGAGCAG
INTRON 10 - 11 22,479,559 22,483,153 3,595
GTAAATTCCCCCCTTTTCCTATATA..........AAACTACCTTTTTTTTAAATTCAAG
11 EXON 11 22,479,435 22,479,558 1 2 124
GGGATGAAGTTCTAGAGTGGAATGGTAAACCCCTGCCGGGAGCAACAAACGAAGAAGTTT
ACAACATTATTTTAGAATCAAAATCAGAACCTCAAGTTGAAATTATTGTTTCAAGGCCTA
TTGG
INTRON 11 - 12 22,475,735 22,479,434 3,700
GTAAGGCTAAAAAAACTTACTTCTT..........TTTTCACTGTATCTGTTTCTTTTAG
12 EXON 12 22,475,688 22,475,734 2 1 47
TGACATCCCCAGGATCCCTGAGAGTTCCCACCCTCCCCTGGAGTCCA
INTRON 12 - 13 22,472,838 22,475,687 2,850
GTGAGTATAGCATTTCCTTGTTATT..........ATGTTCATTTTTATCCTCATTTTAG
13 EXON 13 22,472,725 22,472,837 1 0 113
GTTCAAGTTCCTTTGAATCTCAGAAGATGGAAAGGCCTTCCATTTCTGTTATTTCTCCAA
CCAGCCCTGGAGCTCTGAAAGATGCCCCACAAGTCTTACCAGGGCAACTCTCA
INTRON 13 - 14 22,468,322 22,472,724 4,403
GTATGTGCTTTTTATACACAGTGAA..........TACATGGACTTTTCTTCACTCCTAG
14 EXON 14 22,468,191 22,468,321 0 - 131
GTGAAGCTGTGGTATGATAAGGTGGGGCACCAGCTGATTGTAAATGTTCTACAAGCAACA
GATCTACCCCCTAGAGTAGATGGGCGTCCCAGAAATCCCTATGTAAAAATGTATTTTCTT
CCAGATAGAAG
3' upstream sequence
GTAATACATGAATTTTGAAAAGTTGACTAGCTTCTGTATTAATGGAAAACTGTTTTTCCT
TCCTGGGACATATTTTCTAAGTACAATAAGTATTTAGGGGACCAAACTGCATTATTCCAC
AAGACAGTGTCTTATACCTTTAACTTCCAAGTAAGATGGTATTTTTAAATATATCAGTTA
GTTGATCCACTTCATTAAAATGCACCTCTATATGTACATGTCATGGTCATTGCTTACATT
TGTAATTGAAATCAGTAATATTAGGTAGTATTATTATTAATGCTCATGGGCACAATTTAG
ATTTTGATGTTATAATGTAAAAATAGTAAAAGGATGGCTGGAAATGTAGTTCCATGGTAA
AGCATACATTAGCTTGTATGAAGCTCTGGGATTGAACCTCACCTCAAGGCATTGTTCAGA
AGTGACAGCTTAGTTTTTCAGCCTTGTAGAAGACATTTATAGATATGAGCCTCTAAGGCT
AGTGGGACATTGTAGAAGAAGGAAACGGAAGGAATGTGAAAAATAATAATGGCAGACATG
CTGGGCAATGGTGGTGCATGCCTTTAATCCCAGCACTTGGGCGGTAGAGGCAGGTGGATT
TCTGAGTTCGAAGCCAGCTTGGTCTTCAAAGTGAGTTCCAGGACAACCAGGGCTATACAG
AGAAACCCTGTCTCGAAAAACCAAAATAAATAAATAAAATAAATAAATAAATAAATAAAA
TGGCAGACTTGCTGTAAGTCTCCAACTTTTTGACAAGATGAAACATTGACAAGCAAGGAC
TCAAACCTGCAAGAGTTTGCCTGCACTGAAGCTAAATGCATGTGTGTATACACACACGCA
CACGACACACAGCACATCCACAGCACATACACACAGCACACATACACAAACCACACCACA
CACACATGCCACACTCACTCCAGTAGTGACAGGCCCGGGAGCTTGGAAGCCGTCCCCAGG
TGAATAGTTCAGGGAAACTTCTTTTCCTGGAACAATGGCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Transcript ID ENSMUST00000097808
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 803 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information