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Target CDS Information

Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Cross Reference
EMBL AC117188, AC125522, AC130211, ...show all
GO GO:0005515, GO:0005622, GO:0006461, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Rims1-204
Reactome R-MMU-112310, R-MMU-112315, R-MMU-112316, ...show all
UniParc UPI0000D8ABB2
Uniprot/SPTREMBL F6VBR4
Definition protein_id:ENSMUSP00000095420
translation:
MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRD
MAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRK
IGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNVSKV
VMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSR
SQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLS
EQNGKGGQKSERKRVPKSVVQPGEGTADERERKERRETRRLEKGRSQDYPDRLEKREDGR
VAEDEKQRKEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPV
TWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLAD
VVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHP
PLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQ
ATDLPPRVDGRPRNPYVKMYFLPDRSTISLGDQTALFHKTVSYTFNFQKYVIFFETNPFL
EKPDLAYYKLSCSTMSFACRKPSGHTEVSVCLTVVQSQRISDSDISDYEVDDGIGVVPPV
GYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPT
RRSRSPTRHHDASRSLADHRSRHAESQYSSEPDSELLMLPRAKRGRSAECLHMTSELQPS
LDRARSASTNCLRPDTSLHSPERERGRWSPSLARRRPASPRIQIQHASPENDRHSRKSER
SSIQKQSRKGTASDADRVLPPCLSRRGYAIPRATDQPVIRGKHTTRSRSSEHSSIRTLCS
MHHLAPGGSAPPSPLLTRTHRQGSPTQSPPADTSFGSRRGRQLPQVPVRSGSIEQASLVV
EERTRQMKMKVHRFKQTTGSGSSQELDHEQYSKYNIHKDQYRSCDNASAKSSDSDVSDVS
AISRASSTSRLSSTSFMSEQSERPRGRISSFTPKMQGRRMGTSGRAIIKSTSVSGEIYTL
EHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSRRSRSTSQLSQTESGHKKLKSTIQR
STETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQL
VGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACI
AKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDL
SSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS

Chromosome 1
Length
Position(start - end)
517,301
22,288,422 - 22,805,724
Orient to Chromosome minus
Link Location : (1:22288422-22805724)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Transcript ID ENSMUST00000097811
Reports
substitution
cSNPs10
Insertion334
Deletion404
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num4
synonymous substitutions 22346359 (p.Leu1166Leu), 22346411 (p.Ser1148Ser), 22373400 (p.Arg1090Arg), 22397476 (p.Pro1007Pro), 22397500 (p.Arg999Arg), 22538360 (p.Ala268Ala),
non-synonymous substitutions 22373381 (p.Met1097Leu), 22427492 (p.Ala804Val), 22534045 (p.Asp358Glu), 22534140 (p.Ala327Thr),
B6 transcript
(ENSMUST00000097811)
MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRD
MAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRK
IGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNVSKV
VMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSR
SQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLS
EQNGKGGQKSERKRVPKSVVQPGEGTADERERKERRETRRLEKGRSQDYPDRLEKREDGR
VAEDEKQRKEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPV
TWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLAD
VVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHP
PLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQ
ATDLPPRVDGRPRNPYVKMYFLPDRSTISLGDQTALFHKTVSYTFNFQKYVIFFETNPFL
EKPDLAYYKLSCSTMSFACRKPSGHTEVSVCLTVVQSQRISDSDISDYEVDDGIGVVPPV
GYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPT
RRSRSPTRHHDASRSLADHRSRHAESQYSSEPDSELLMLPRAKRGRSAECLHMTSELQPS
LDRARSASTNCLRPDTSLHSPERERGRWSPSLARRRPASPRIQIQHASPENDRHSRKSER
SSIQKQSRKGTASDADRVLPPCLSRRGYAIPRATDQPVIRGKHTTRSRSSEHSSIRTLCS
MHHLAPGGSAPPSPLLTRTHRQGSPTQSPPADTSFGSRRGRQLPQVPVRSGSIEQASLVV
EERTRQMKMKVHRFKQTTGSGSSQELDHEQYSKYNIHKDQYRSCDNASAKSSDSDVSDVS
AISRASSTSRLSSTSFMSEQSERPRGRISSFTPKMQGRRMGTSGRAIIKSTSVSGEIYTL
EHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSRRSRSTSQLSQTESGHKKLKSTIQR
STETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQL
VGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACI
AKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDL
SSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS*
MSMv4 transcript
MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRD
MAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRK
IGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNVSKV
VMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSR
SQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLS
EQNGKGGQKSERKRVPKSVVQPGEGTTDERERKERRETRRLEKGRSQDYPDRLEKREEGR
VAEDEKQRKEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPV
TWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLAD
VVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHP
PLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQ
ATDLPPRVDGRPRNPYVKMYFLPDRSTISLGDQTALFHKTVSYTFNFQKYVIFFETNPFL
EKPDLAYYKLSCSTMSFACRKPSGHTEVSVCLTVVQSQRISDSDISDYEVDDGIGVVPPV
GYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPT
RRSRSPTRHHDASRSLADHRSRHVESQYSSEPDSELLMLPRAKRGRSAECLHMTSELQPS
LDRARSASTNCLRPDTSLHSPERERGRWSPSLARRRPASPRIQIQHASPENDRHSRKSER
SSIQKQSRKGTASDADRVLPPCLSRRGYAIPRATDQPVIRGKHTTRSRSSEHSSIRTLCS
MHHLAPGGSAPPSPLLTRTHRQGSPTQSPPADTSFGSRRGRQLPQVPVRSGSIEQASLVV
EERTRQMKMKVHRFKQTTGSGSSQELDHEQYSKYNIHKDQYRSCDNASAKSSDSDVSDVS
AISRASSTSRLSSTSFLSEQSERPRGRISSFTPKMQGRRMGTSGRAIIKSTSVSGEIYTL
EHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSRRSRSTSQLSQTESGHKKLKSTIQR
STETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQL
VGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACI
AKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDL
SSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS*
homology99.72 (1425 / 1425)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Transcript ID ENSMUST00000097811
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAAAGATTGCATTGAAGGGTACAATGCTAATTCGGGTTGCTGGATGTGTG
TATGTTGTGTGTGTGTGCACCAAAATTATCTAGGAACCCACACACAACTGTGGCTGTGCA
CACTTGCTGAGTAAAGCAGAAAGACATGGTGGCAGGAAGGGGAAAATAGACCTAGAGGGT
GTACCATCCTGCTGTTCTAAACCCTGTGGGTGCTCAAAAAGCATCAATGATGAAGACTGT
GGCGAGGATGAAGATGATTAAAGCAACCCATGGGAAAATAGGGTTGGGGAGGATGACATG
GACCAGGACCTGGGAGAGGGAGGATGACTCAGGGTGAGGGGTACCTTGGGAGAGATCAGT
GGAGTATGCACGTCGGCGAGCGTGGGGCGGGGGGAATGGCCAGGGCACGCGTGGCTCGGA
CCCGGGGAGTGGGTGGGTGGTGCCCGTGGGCGGAGCGGCTCCGGGACTGAGTGGCTGGCA
GCTTATGTCTGCGAGAGCAGCAGCATCACCCGGGAGCGAAGCTCCGAGACTCCGCCTAAC
TGACACCCAAACTCTCCCTCTCCCTCCCGCAGCCCCAAACTGGAGGCAGCGGAGCCCGCG
AGCAAGCAGCGTCGGGCGGCCCCGGCCCGGCCCCGCCCCCGGCCCGCCAGCCCAGCCCGC
GCCCGGCCGCCGTGCTCCGGAGCTCAGCGCCAGCCCTCGCCCTCTCGCCGAGCCTCCGCC
TGTCCGCCCCCGCCGGCCGAGGCTGGGCTGCGGGAGGCGGCCGGGCGGCCCCGAGCCTCG
CCAGGGCGACCCAAACAAAGGCAGCATCCGGGCTCGGCGGGAGGCAGAGCATCATGAGAG
ACTGGGTCCTCGCTGTCCCCGGCTCCGCTGCTGCTGCCGCTGCCGCCGCCGCTGCCGCCG
CCGGGAGGGCTTCGCTGTGAGCGTGGAAAGCAGGGGCGCAGCTGCGGGGCGTGAATCCGA
AAGGTGAGAGCCAGAGCCAGCGAGCCGAGGGGGCGGGCAGGCCACGAAAA
1 EXON 1 22,805,561 22,805,724 - 2 164
ATGTCCTCGGCCGTGGGGCCCCGAGGTCCTCGCCCACCCACGGTGCCTCCCCCTATGCAA
GAACTGCCCGACCTGAGCCACCTGACCGAGGAGGAGAGGAACATTATCATGGCAGTGATG
GACCGGCAGAAGGAAGAGGAGGAAAAAGAAGAGGCCATGCTCAA
INTRON 1 - 2 22,727,011 22,805,560 78,550
GTAAGCACCCCCCAACCCCCCAGGG..........TTGTGCTGTCTATCATGCGCCCCAG
2 EXON 2 22,726,930 22,727,010 2 2 81
GTGTGTTGTCAGGGACATGGCGAAGCCTGCTGCCTGCAAAACACCAAGAAATGCTGAAAG
CCAGCCCCATCAACCACCACT
INTRON 2 - 3 22,630,481 22,726,929 96,449
GTAAGTACAGCATTGGTTTTATTGA..........TGTCTTCTTCTCCCTTGCCTTGCAG
3 EXON 3 22,630,412 22,630,480 2 2 69
GAACATTTTCAGATGTGTCTGTGTTCCCAGAAAGCCAAGCAGCGAAGAGGGAGGCCCAGA
CAGAAACTG
INTRON 3 - 4 22,596,585 22,630,411 33,827
GTATTTCCTCTCCTTCCTGCTTTGG..........TTTCTCTCTCGTCTCTTTTGCCCAG
4 EXON 4 22,596,365 22,596,584 2 0 220
GAGATTGCATCAACAGTTTGAAAGCTACAAGGAACAAGTGAGAAAAATCGGAGAGGAAGC
CAGGCGTTACCAGGGCGAGCACAAAGATGATGCCCCGACGTGTGGAATCTGTCATAAGAC
AAAGTTTGCTGATGGATGTGGCCATCTCTGCTCCTATTGTCGCACCAAGTTCTGTGCACG
CTGTGGAGGCCGAGTGTCTCTGCGATCGAACAATGTGAGT
INTRON 4 - 5 22,592,310 22,596,364 4,055
GTCCTGTGAACACAGCAGGGGACCA..........ATTTTTCCTGGAGCTGGAGTTATAG
5 EXON 5 22,592,304 22,592,309 0 0 6
AAGGTT
INTRON 5 - 6 22,538,624 22,592,303 53,680
GTGAGCTGTTTGAGGTGGGTTCTGG..........ATTTCTCTTTCTCTTCTCCAAATAG
6 EXON 6 22,538,286 22,538,623 0 2 338
GTTATGTGGGTATGCAATTTATGTCGAAAGCAACAAGAGATATTAACGAAATCTGGAGCG
TGGTTCTTCGGAAGTGGTCCTCAGCAGCCCAGTCAAGATGGGACTCTGAGTGACACGGCT
ACAGGTGCTGGATCTGAGGTGCCAAGAGAAAAGAAAGCTCGGCTCCAAGAGCGATCAAGG
TCTCAGACGCCCTTGAGTACAGCAGCTGTCTCTTCCCAAGACACTGCTTCCCATGGTGCA
CCACTGGACAGGAACAAAGGGGCAGAGCCCTCACAGCAAGCCTTGGGTCCTGAACAGAAG
CAGGCATCAAGGTCAAGAAGTGAGCCACCAAGGGAAAG
INTRON 6 - 7 22,534,241 22,538,285 4,045
GTAATAATTCACTAGCACTGTAAAC..........ATCAACTGTTCTCTGCGCATCACAG
7 EXON 7 22,534,004 22,534,240 2 2 237
GAAGAAGGCTCCAGGGCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGAGTGAGCGCAA
ACGTGTCCCCAAGTCTGTGGTGCAACCCGGGGAAGGGACCACGGATGAACGGGAGAGGAA
GGAGAGGCGGGAAACCCGCAGGCTGGAGAAAGGGCGCTCTCAGGACTACCCGGACCGGCT
CGAGAAACGCGAGGAAGGCAGGGTGGCTGAAGACGAAAAGCAGAGGAAGGAGGAGGA
INTRON 7 - 8 22,533,797 22,534,003 207
GTATCAGACTAGGTACCGCAGCGAC..........GCAAGCGCGCGCAGACCACCGCCAG
8 EXON 8 22,533,796 22,533,796 2 0 1
G
INTRON 8 - 9 22,533,469 22,533,795 327
GTCTCTCCCCCGGAGTCCCCGCGCG..........GTCGGTGAGCAGCTCCGAGGAGGAG
9 EXON 9 22,533,399 22,533,468 0 1 70
GGCGTGTCCACGCCGGAGTACACGAGCTGCGAGGACGTGGAGCTGGAGAGCGAGAGCGTG
AGCGAGAAAG
INTRON 9 - 10 22,486,653 22,533,398 46,746
GTGAGCGCGGCTCGGAGGTGGAGAT..........CCTTTTGTCCCTTTTCACGTCACAG
10 EXON 10 22,486,588 22,486,652 1 0 65
GTGACTTGGACTACTGGTTGGATCCTGCCACGTGGCATAGCAGGGAAACGTCGCCTATTA
GTTCG
INTRON 10 - 11 22,484,753 22,486,587 1,835
GTAAGTTTTTTGACGGCGTATACAG..........TTTTTTAAACTTTATGTTTTGACAG
11 EXON 11 22,484,642 22,484,752 0 0 111
CATCCTGTAACGTGGCAGCCATCTAAAGAGGGGGACCGATTAATCGGCCGTGTTATTCTT
AACAAAAGAACAACCATGCCCAAAGAATCAGGTGCATTATTGGGTCTCAAG
INTRON 11 - 12 22,483,254 22,484,641 1,388
GTATGTATCCAGGTTTATAATGCTG..........GGCTCATGAATTTGTCACTTTGCAG
12 EXON 12 22,483,154 22,483,253 0 1 100
GTGGTTGGAGGAAAAATGACGGACTTAGGGCGTCTTGGTGCTTTCATCACCAAAGTAAAG
AAGGGTAGCCTGGCAGATGTTGTCGGACACCTAAGAGCAG
INTRON 12 - 13 22,479,559 22,483,153 3,595
GTAAATTCCCCCCTTTTCCTATATA..........AAACTACCTTTTTTTTAAATTCAAG
13 EXON 13 22,479,435 22,479,558 1 2 124
GGGATGAAGTTCTAGAGTGGAATGGTAAACCCCTGCCGGGAGCAACAAACGAAGAAGTTT
ACAACATTATTTTAGAATCAAAATCAGAACCTCAAGTTGAAATTATTGTTTCAAGGCCTA
TTGG
INTRON 13 - 14 22,475,735 22,479,434 3,700
GTAAGGCTAAAAAAACTTACTTCTT..........TTTTCACTGTATCTGTTTCTTTTAG
14 EXON 14 22,475,688 22,475,734 2 1 47
TGACATCCCCAGGATCCCTGAGAGTTCCCACCCTCCCCTGGAGTCCA
INTRON 14 - 15 22,472,838 22,475,687 2,850
GTGAGTATAGCATTTCCTTGTTATT..........ATGTTCATTTTTATCCTCATTTTAG
15 EXON 15 22,472,725 22,472,837 1 0 113
GTTCAAGTTCCTTTGAATCTCAGAAGATGGAAAGGCCTTCCATTTCTGTTATTTCTCCAA
CCAGCCCTGGAGCTCTGAAAGATGCCCCACAAGTCTTACCAGGGCAACTCTCA
INTRON 15 - 16 22,468,322 22,472,724 4,403
GTATGTGCTTTTTATACACAGTGAA..........TACATGGACTTTTCTTCACTCCTAG
16 EXON 16 22,468,191 22,468,321 0 2 131
GTGAAGCTGTGGTATGATAAGGTGGGGCACCAGCTGATTGTAAATGTTCTACAAGCAACA
GATCTACCCCCTAGAGTAGATGGGCGTCCCAGAAATCCCTATGTAAAAATGTATTTTCTT
CCAGATAGAAG
INTRON 16 - 17 22,468,110 22,468,190 81
GTAATACATGAATTTTGAAAAGTTG..........TCCTTCCTGGGACATATTTTCTAAG
17 EXON 17 22,468,100 22,468,109 2 0 10
TACAATAAGT
INTRON 17 - 18 22,468,098 22,468,099 2
AT
18 EXON 18 22,468,041 22,468,097 0 0 57
TTAGGGGACCAAACTGCATTATTCCACAAGACAGTGTCTTATACCTTTAACTTCCAA
INTRON 18 - 19 22,432,989 22,468,040 35,052
GTAAGATGGTATTTTTAAATATATC..........GTATATGGGAAGAAATTTTGTTTAA
19 EXON 19 22,432,923 22,432,988 0 0 66
AAATATGTAATATTTTTTGAAACAAACCCATTTCTAGAAAAGCCAGACCTTGCTTACTAT
AAATTA
INTRON 19 - 20 22,432,922 22,432,922 1
T
20 EXON 20 22,432,844 22,432,921 0 0 78
TCTTGTTCAACTATGTCCTTTGCATGTCGTAAACCGAGTGGACACACAGAGGTATCTGTT
TGCCTTACTGTTGTGCAG
INTRON 20 - 21 22,432,842 22,432,843 2
GA
21 EXON 21 22,432,772 22,432,841 0 1 70
TCTCAGCGAATCAGTGATAGTGACATCTCAGATTATGAGGTTGATGATGGTATTGGCGTA
GTGCCTCCAG
INTRON 21 - 22 22,428,622 22,432,771 4,150
GTGCGTGGTGAAAGGCATGGCTCCA..........AGTTTTATCTGTATGCTCTTGTCAG
22 EXON 22 22,428,465 22,428,621 1 2 157
TGGGTTATAGAGCTAGTGCTAGAGAGAGTAAAGCCACCACGTTAACAGTGCCAGAGCAGC
AAAGAACCACACATCACCGCTCACGTTCCGTGTCTCCTCATCGCGGCGATGATCAGGGAA
GGCCTCGTTCACGTTTACCAAATGTGCCATTACAGAG
INTRON 22 - 23 22,427,588 22,428,464 877
GTAGGTCTGGAGCAGGCTTAATGCT..........AATGAAGTTTTGTGGCACATTTTAG
23 EXON 23 22,427,462 22,427,587 2 2 126
GAGCTTAGATGAAATCCATCCAACACGAAGGTCACGTTCTCCAACCCGACACCATGATGC
CTCCCGAAGCCTGGCCGATCACAGATCACGACATGTGGAAAGTCAGTATTCATCAGAGCC
AGACAG
INTRON 23 - 24 22,425,934 22,427,461 1,528
GTACTTTTCCCAAGTAGAATCTCAG..........CTCACCACCCATCCTGTCTGTGCAG
24 EXON 24 22,425,871 22,425,933 2 2 63
TGAGCTTCTCATGCTGCCCAGAGCAAAACGAGGACGAAGTGCAGAATGCCTACACATGAC
CAG
INTRON 24 - 25 22,421,831 22,425,870 4,040
GTAAATACAGGGATTTGGTTCTGGT..........TCTACCACTGGATGTAATGCACTAG
25 EXON 25 22,421,741 22,421,830 2 2 90
TGAACTGCAGCCCTCTCTTGACAGGGCTAGGAGTGCTAGTACCAACTGCTTGAGACCAGA
TACTAGTTTGCATTCACCAGAACGAGAAAG
INTRON 25 - 26 22,412,295 22,421,740 9,446
GTATAAAATAAAGACTTTCTGAATT..........CCTGTCTTGTTCACTGGGCAAACAG
26 EXON 26 22,412,211 22,412,294 2 2 84
GGGTAGATGGTCCCCCTCCCTAGCTAGGAGGCGACCTGCTAGCCCCAGGATTCAAATCCA
GCATGCGTCTCCGGAGAATGACAG
INTRON 26 - 27 22,404,516 22,412,210 7,695
GTACAAGTCACCTCCTCACAGACAA..........TTTCTTTAACATTTCATCCCCACAG
27 EXON 27 22,404,444 22,404,515 2 2 72
GCACTCCAGAAAGTCTGAAAGATCTAGCATCCAAAAACAGTCTAGGAAAGGCACAGCCTC
TGATGCAGACAG
INTRON 27 - 28 22,398,782 22,404,443 5,662
GTAGGCTTGATGTTGTGCAGTGCTG..........ATCTTTTTTGGCACTAATGTTTTAG
28 EXON 28 22,398,599 22,398,781 2 2 183
GGTTCTCCCACCATGCCTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACC
GGTCATTAGGGGAAAGCATACCACTCGCTCCCGGTCGAGCGAGCACTCTAGTATCAGAAC
CCTGTGTTCTATGCACCACCTTGCCCCCGGAGGGTCAGCGCCGCCTTCTCCGCTTCTGAC
AAG
INTRON 28 - 29 22,397,564 22,398,598 1,035
GTTGCTATTCAGTGTCCAGCCCAGC..........CCCTCCCTTTGCTGTTTGCCTACAG
29 EXON 29 22,397,451 22,397,563 2 1 113
AACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTCG
CCGTGGAAGACAGCTCCCACAGGTGCCAGTCCGAAGCGGCAGTATAGAACAAG
INTRON 29 - 30 22,379,541 22,397,450 17,910
GTATCCAAATAAGCGACATCTTTGT..........AGCTTTCTGTTGTGTGTTTTTGCAG
30 EXON 30 22,379,428 22,379,540 1 0 113
CGAGCTTAGTAGTGGAGGAACGAACGAGACAGATGAAAATGAAGGTACACCGATTTAAGC
AGACAACAGGGTCTGGGTCTAGTCAAGAACTTGACCACGAGCAATACTCCAAG
INTRON 30 - 31 22,373,511 22,379,427 5,917
GTAAAATTAGTAGTATCCAGCCAAT..........ATCCTCTCTTGTGTTTAATCTTTAG
31 EXON 31 22,373,344 22,373,510 0 2 167
TACAACATACATAAAGATCAGTACAGAAGCTGTGATAACGCGTCCGCCAAGTCATCAGAT
AGTGATGTCAGTGATGTGTCCGCCATTTCCAGAGCCAGCAGCACCTCACGGCTCAGCAGC
ACAAGCTTTCTGTCAGAGCAGTCTGAGCGCCCCAGGGGCAGGATCAG
INTRON 31 - 32 22,346,529 22,373,343 26,815
GTGAGTTGGCAATGCTGTCTCTGTG..........ATATGTTTTTACTTTGTAAATATAG
32 EXON 32 22,346,293 22,346,528 2 1 236
TTCATTTACCCCCAAAATGCAAGGCAGACGGATGGGGACTTCAGGAAGAGCCATCATCAA
GAGCACCAGTGTAAGTGGAGAGATATATACACTGGAGCACAATGACGGCAGCCAGTCGGA
CACGGCCGTGGGTACCGTTGGAGCTGGTGGAAAGAAGCGGAGGTCCAGCTTGAGTGCCAA
AGTGGTAGCCATTGTGTCTCGAAGAAGCAGAAGCACATCACAGCTCAGCCAGACAG
INTRON 32 - 33 22,296,997 22,346,292 49,296
GTGAGCACAGTGCGCTCCGCCTCCC..........CCTGTTTCCACTCTCCCCCCATCAG
33 EXON 33 22,296,858 22,296,996 1 2 139
AGTCCGGCCACAAGAAGTTAAAAAGCACCATTCAGAGGAGTACGGAAACGGGAATGGCGG
CTGAAATGCGGAAGATGGTGAGACAGCCCAGCCGGGAGTCCACGGATGGCAGCATCAACA
GTTATAGCTCAGAAGGAAA
INTRON 33 - 34 22,292,935 22,296,857 3,923
GTAAGTGACATGATGTCTTTGCTGC..........TTTTGCTCTTATGTGTTTGCTATAG
34 EXON 34 22,292,822 22,292,934 2 1 113
CTTAATATTTCCTGGAGTTCGCGTGGGACCTGACAGTCAGTTCAGTGATTTCCTTGATGG
ATTGGGGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGG
INTRON 34 - 35 22,291,115 22,292,821 1,707
GTAAGGATTCTTTTTCTGCAGTTTA..........CATTTTCTTTGGTCTTCACTTGCAG
35 EXON 35 22,291,013 22,291,114 1 1 102
GCGATATCCAAATCGGGATGGAGGATAAGAAGGGTCAGTTGGAGGTTGAGGTTATCAGAG
CCCGGAGCCTTACACAAAAACCTGGCTCCAAATCTACACCTG
INTRON 35 - 36 22,290,200 22,291,012 813
GTAAGGAAAAGTTGCACCATTTTGG..........TATATGTCTGCTCATCTTGGTCTAG
36 EXON 36 22,290,060 22,290,199 1 0 140
CTCCCTATGTGAAAGTTTATCTTTTGGAAAATGGAGCCTGTATTGCCAAAAAGAAGACAA
GAATTGCACGGAAAACTCTCGATCCCTTGTATCAGCAGTCCCTGGTTTTTGATGAAAGTC
CACAGGGTAAAGTTCTTCAG
INTRON 36 - 37 22,288,641 22,290,059 1,419
GTCAGTAAACTTTGCTTGGTTAATT..........TTACAATATATTTCTCTATCTGCAG
37 EXON 37 22,286,251 22,288,640 0 - 2,390
GTGATTGTCTGGGGTGACTATGGAAGAATGGACCACAAATGCTTTATGGGTGTGGCTCAA
ATCTTGTTGGAAGAACTTGATCTGTCCAGCATGGTGATTGGATGGTATAAATTGTTCCCT
CCATCCTCCCTGGTGGATCCCACACTCACTCCCCTGACCCGCCGGGCTTCCCAATCATCA
CTGGAAAGTTCGTCTGGGCCTCCCTGCATCCGGTCATAGTAAACTCCTAACCTTCCAGCC
AAACTCTACATTTCAGGATAATTATCAGAACCAGATATTTCGTGATCAAGAGCATTGTTG
GAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGTTGTTCGATAATTGTGTCCCAATT
GTTGTTTAAAACATGGCTTCGTATGACAGAACAAGGCAGTCAATCACATTGCAGTAAGAA
TCGACATGCTAGTGAGAGCCACTGATACTTCTTGCAAATAGGAAAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACAC
ACACCAAACTGAACAAACTGGAAAGTCTCACTCTGTGAAAAGGTGTACTTCACACATTTC
TGCACAGACCACAAGCAGTGTTGTTTCCCTGGTGTTTGAGATTCTTGAGTTCTTCTGAGT
GCTTTCCTTGTTTGAGCGTTGTTTGCTGGTTTTTTTCCCCATTGTCTCTCTTTCTCTGTC
TTCACTATATTTGTTCTTTCCACTAGTTTGTTTGTTTTGTTTTGTTTTGTTTTTCATTTT
TTTGTCTTTGTCTTTCTCTGCTTCGTCATAACAGAGTTATGGTGTTCACAGAGACCCTTC
CTTTCTTTTTTCCAAAAGCACCAAAAAAGGGCTGAAGCCGTCTCTGTAGCATTTTCCCCA
AAGTTTTCAAAAGCTGGGCAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTAC
AGTTCTTCCAAGTCTTGTATGTGGAATTTCCACACACACACACACACACACACAGACAGT
AAAAATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTGTT
CCCATTCCAGATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACC
TAGAACTGATGCTGGGGATGAAGGCTAACCACATAGTAGTGCTTTGGAAACCCTTTCCGA
AATGCCTTTTTACTTCCTGATAACAAAAGAAAAAAAAATGTTCATGTGTAGAAACCATGC
TCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTTTCAGCTATG
CCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTCGTCTGCCCTGGAAAGAGCATAGTATG
AGCTGTTTAATATTGCACTGGAAATTCCAGTTCATAAACTCTGCACTAAATTAATGTTTT
TATTGGATTTCAGTTTACATTTCTTTAAGGTCAATGCAAGCACAAAGCTTGATTTTTTTA
AATGCACAATATCTTACTTTGGGGGAAGAAAAAGAATACAGCCAAATACCAATTTGCATA
TTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTTGGTCCTGCAG
CTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAACTTTTTGTGATTTCACAG
TTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTTGTATAAAAAAATATGA
AAAAGAAAGAAAAAAAGCAAAGAGACAAAAGGTTATTTAATAATGTATGTTAGCTCCATA
TAGGCTGGCTTGTATGTTGCATGTACTTGTACAGTTTGCTTGTTAATTACTATATTGAAA
TAACCAAGAAATCTAAGCCATCCATTTTTGTTATAGACATTTTGCAGGTTTTAGCCAGAC
TCAGTATGTGGGTCTGGTGTGAAATGTCTATAGATGGACTTTATTTTTTACCCTCTGGAA
AACGTGATGTAGTATGGACCAAAATTCCTTCTAATAAATATTTTGGTGTCGATTCCTCCT
GTGGGGCTGTGACACATGTAGACACTGTGTAAACACTAGGTTTTAATCCATAGACATACT
GCCTGCACCAAGTGAATCATTTATTATTATTTACACATGTCAGAATTCCCTGCCCATTAT
CCCACAGGGCACAGATTGACCACCACCCACCATGCTGTGCAGGAAGAACTGAAGCACTTG
GTGCACTTCTACTAGATTCCGTTCTGTCTTAGTGGCCAACAATCAACCGATTAAAATTGG
GTAGTAATATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAATGGA
CTTCCCACTCATGTATGTAAACATGTTTAATAAAACTTACTTTTCATGTC
3' upstream sequence
AGTTGGTAGCCATCTGCGTTCTATGTTTTGCCAGCTTTCCATTGTGGGTTCTTTGGTGCA
AAAGGAGAACCAGGTGTTGGGACAGGGAGGCTTGGGTTCGCTGTCTGCTGTGGGCATTTG
ATTGACCTGTCACTGCACTATATATGTCTTAACAGACAACCTGAAGGGTACTTTGCATTA
CATATGAGTATTCACTTTGTCAGCCTGTCTTAAGTGAGCACATGTCTATACTTCTGAAAA
GTGGTTTATTAAAGACAATAAATCTCAGTAAGAATCAAACGAAGGACGTTTCTCTGCTGC
TGTTTGAATGTGCTAATAAAAGCGACAACGCTGTCGTCCACTTGACAAATCATTTCACGT
TCTATGACATAGTTGAAGAATCAATCTTTGCACCTCTTGTTATAGTATCTTGGCTTCCTC
CTAGCCTTTTCCCTCTGATCCGCTGTCTAGCTTATAAGACCTTGCCTACAGTAGGCTGAC
TTGAAATAAACTAAGTCTGCACTGACGCTGAGTCACCAAGGTAACATCTCCAATACTCAT
AGGTAAGTCTCTCATGAGCTTTTGTAGACTACACTAGCATCCACTTCATAAGGAGAAATA
AGAACAGTGGTAGCAACATCCTATCTGACATACCCAAGCAACTTAAGACTCCAGCAGGTG
TTTGAAGTTTTAAAATAAACATGTGACCTCTTGCCCATGGAGTGATTTAATGAATGGGCC
CACCAAAGATGAGATTACGTATTGTGTTAGGCGGAGAGGAGGCTAAAGCTGTGTTCAGTT
CCATGTACAACAAACCATCAGAGTAAAGTGTTGCACACATGCTCATCACCATATGGTTGC
CATGTGGTTGTGTGAGGCAGAGGACAAAGCTGCCCCTGAGACCAGGGTGCAGGCAAAGTC
AGTTTTAGGCTAGACAAGATGAGAAATATTTCCTTTCAAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAAAAAGCTACCAAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Transcript ID ENSMUST00000097811
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1425 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information