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Target CDS Information

Gene Symbol (Gene ID) Grk6 (ENSMUSG00000074886)
Cross Reference
CCDS CCDS36676.1
EMBL CH466546, CT009762, Y15797, ...show all
GO GO:0004703, GO:0005524, GO:0006468, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0006464, ...show all
MGI_trans_name Grk6-202
protein_id CAA75788.1, CAA76974.1, EDL41192.1
RefSeq_mRNA NM_001286066.1, NM_011938.4
RefSeq_peptide NP_001272995.1, NP_036068
UCSC uc007qqx.3
UniParc UPI00000E7D25
Uniprot/SPTREMBL Q9EP84
Definition protein_id:ENSMUSP00000097081
translation:
MELENIVANTVLLKAREGGGGNRKGKSKKWRQMLQFPHISQCEELRLSLERDYHSLCERQ
PIGRLLFREFCATRPELTRCTAFLDGVSEYEVTPDEKRKACGRRLMQNFLSHTGPDLIPE
VPRQLVSNCAQRLEQGPCKDLFQELTRLTHEYLSTAPFADYLDSIYFNRFLQWKWLERQP
VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEK
VNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLE
DLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVRNE
RYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVAEEYTDRFSSQARSLC
SQLLSKDPAERLGCRGGGAREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQAIYCKDVLDI
EQFSTVKGVDLEPTDQDFYQKFATGSVSIPWQNEMVETECFQELNVFGLDGSVPPDLDWK
GQPTAPPKKGLLQRLFSRQR

Chromosome 13
Length
Position(start - end)
13,828
55,445,509 - 55,459,338
Orient to Chromosome plus
Link Location : (13:55445509-55459338)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Grk6 (ENSMUSG00000074886)
Transcript ID ENSMUST00000099482
Reports
substitution
cSNPs5
Insertion13
Deletion8
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num0
synonymous substitutions 55450353 (p.Arg79Arg), 55452203 (p.Gly269Gly), 55453050 (p.Asp311Asp), 55454611 (p.Leu424Leu), 55458900 (p.Thr504Thr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000099482)
MELENIVANTVLLKAREGGGGNRKGKSKKWRQMLQFPHISQCEELRLSLERDYHSLCERQ
PIGRLLFREFCATRPELTRCTAFLDGVSEYEVTPDEKRKACGRRLMQNFLSHTGPDLIPE
VPRQLVSNCAQRLEQGPCKDLFQELTRLTHEYLSTAPFADYLDSIYFNRFLQWKWLERQP
VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEK
VNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLE
DLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVRNE
RYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVAEEYTDRFSSQARSLC
SQLLSKDPAERLGCRGGGAREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQAIYCKDVLDI
EQFSTVKGVDLEPTDQDFYQKFATGSVSIPWQNEMVETECFQELNVFGLDGSVPPDLDWK
GQPTAPPKKGLLQRLFSRQR*
MSMv4 transcript
MELENIVANTVLLKAREGGGGNRKGKSKKWRQMLQFPHISQCEELRLSLERDYHSLCERQ
PIGRLLFREFCATRPELTRCTAFLDGVSEYEVTPDEKRKACGRRLMQNFLSHTGPDLIPE
VPRQLVSNCAQRLEQGPCKDLFQELTRLTHEYLSTAPFADYLDSIYFNRFLQWKWLERQP
VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEK
VNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLE
DLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVRNE
RYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVAEEYTDRFSSQARSLC
SQLLSKDPAERLGCRGGGAREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQAIYCKDVLDI
EQFSTVKGVDLEPTDQDFYQKFATGSVSIPWQNEMVETECFQELNVFGLDGSVPPDLDWK
GQPTAPPKKGLLQRLFSRQR*
homology100.00 (561 / 561)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Grk6 (ENSMUSG00000074886)
Transcript ID ENSMUST00000099482
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTGGCAGTATATATATTTTTTTTTTCAAAAATGAATGAATATGGATCAAA
AACATGTAGTTGAATCCGGTTGTTCCTTAATTCCCGAGTTTGGGCAAGCCTCCGTTTCCT
GCTGTGCGAAAAGGGGTGGTGATGAGGAAGTGGGGGATTGAACTACACTGTGTTGATGAG
ATGCAAAATTCGGACCTGTCCCCCCACTCCCCGTCTCCGCGTGCAGCCAGCCACTCAACA
TCCAGCGCCTCAGGTCCCCACCTGTACAATGGGTGTGAACTCATCCTCAACGACTTGGGG
TGGTTGCGCTGCCTTATAAGGCAGCAGAGGCCGAAGGCGCCGGACGGGTGGGAGGGGAGA
AATCACAACATCCGGCTGCGGGGGCGGGGTACGGGGGTGCGGGGTGCGGCTGAATTGGAG
GCAAGCGCTGCTGGGAAGGCAATAGCTTCCTTCGGTCCTCTGCTAGCTTTGGAAGCGCGC
CCTTCTGAAGCAGCTGACCTAAGGGACGACGGCAGGACACACATTCTAACCAAGCTACCT
GATAGCCGGCAGGAGACACAGCGTGTCCCCAACAAAACCCTAGAAATCCCATCGGCGCAC
CAGACACACAGCCACGCCCCCATCCTTTCACCCAATCAGATCGCAAAGCTGGATGGTCGA
CACGTCTTTAATCCAATCAGATGTTGGGTCCTCTGGGCGTGGTTCCCGAGAGGCCCCACC
TCCGATTTCTCGGCAGAGGCTCGGCCCTAATTGGCAGCTCGGCATCCTACGAAGGCCTAG
AAATTCGAACCTAGGGGCCGAATCCCGTCCGCAGTCCAACCAGAAATCGGCGACGCAACG
GGGCCCTCCCCCTCTCCGCAGGGAGCGAGTTCCCGGCTCCGTGGGCGGGGCAAGAGAAAG
AGGCTGACCAATAGTAGTCCGGCGCGGGGAGCGTCCGCTCGCCCATTGACTGAGCCAAGT
AAACAGAGGGCGGGGCGGGGCGGGCGCCGGTGGACCGGGAGGGGCGCAGA
1 EXON 1 55,445,334 55,445,560 - 1 227
GTACGCGGCGGGCGGCGGCGGCCCGGAGGCCGGTGGGGCCCGGAGGCCGCGGCGCGGTCA
GTCGAGCCGAGCCGAGCCGAGCCGAGCCGAGCCGCGCCGATCGCCATCGGCTCCGGCTCT
CGTGGGCGGTCCCGGCCGGCGGCGCGGCCTGGCGGGCCGGGCGGCGCTGCAGCCCATGGA
GCTCGAGAACATCGTAGCGAACACGGTGCTACTCAAGGCCCGGGAAG
INTRON 1 - 2 55,445,561 55,449,307 3,747
GTGAGGCCAGGCAGGCGGGCGGCCA..........ACCCAGTTCCTGATTGCTCTTGCAG
2 EXON 2 55,449,308 55,449,403 1 1 96
GTGGTGGCGGGAATCGCAAAGGCAAGAGCAAGAAATGGCGCCAGATGCTGCAGTTCCCCC
ATATCAGCCAGTGTGAGGAGCTTCGACTCAGCCTTG
INTRON 2 - 3 55,449,404 55,450,264 861
GTGAGGCCTGGCTCCCAGAGCAGAC..........TCGCAGTTCCCCTCTTGGCCTACAG
3 EXON 3 55,450,265 55,450,377 1 0 113
AGCGTGACTACCACAGCCTATGTGAGCGCCAGCCCATTGGGCGCCTGTTATTTCGTGAGT
TCTGTGCTACGAGACCTGAGCTGACCCGCTGTACTGCCTTCCTGGATGGGGTG
INTRON 3 - 4 55,450,378 55,450,506 129
GTGAGTATCCCACCCAGGGCCCAGC..........AGGTTCTTTGCCTCTCACCCTGCAG
4 EXON 4 55,450,507 55,450,584 0 0 78
TCTGAATATGAGGTGACCCCTGATGAGAAGCGGAAAGCATGTGGGCGCCGACTAATGCAG
AACTTTCTGAGCCACACG
INTRON 4 - 5 55,450,585 55,450,927 343
GTGAGTGAGCGGTGACAGGGAGATG..........TTAGGTGTCTGTGGCGTGTCCCTAG
5 EXON 5 55,450,928 55,451,028 0 2 101
GGTCCTGACCTCATCCCTGAAGTTCCACGGCAGCTGGTGAGTAACTGTGCCCAGCGGCTA
GAGCAGGGACCCTGCAAAGACCTCTTCCAGGAGCTGACCCG
INTRON 5 - 6 55,451,029 55,451,328 300
GTAAGGCTCCATACCTCCTGGTCTG..........CTACAGACTGATCCTCTCTCAACAG
6 EXON 6 55,451,329 55,451,421 2 2 93
GCTGACCCACGAGTACCTGAGCACGGCCCCTTTTGCCGACTACCTCGACAGCATCTACTT
CAACCGTTTTCTGCAGTGGAAGTGGCTGGAAAG
INTRON 6 - 7 55,451,422 55,451,519 98
GTGAACGCCTCCCAAGCTGGCCTGT..........TTTGTTTTTTTACTCTCGCCTATAG
7 EXON 7 55,451,520 55,451,583 2 0 64
GCAACCAGTGACCAAAAACACCTTCAGGCAGTACCGAGTCCTGGGCAAAGGTGGCTTTGG
GGAG
INTRON 7 - 8 55,451,584 55,451,702 119
GTAAGTGGCCACCCAGGTCTTTGCA..........TCCGTCCCTGTCTGCCTGGTTACAG
8 EXON 8 55,451,703 55,451,843 0 0 141
GTATGTGCCTGCCAGGTGCGGGCAACAGGCAAGATGTACGCATGCAAGAAACTGGAAAAG
AAGCGGATAAAGAAGCGAAAGGGGGAGGCCATGGCTCTCAACGAGAAACAGATCTTGGAG
AAAGTGAACAGTAGGTTTGTA
INTRON 8 - 9 55,451,844 55,452,134 291
GTAAGTACACAAGGAGCCCTCTCCC..........GAGGGTGTGGGTCTCCCGAGCACAG
9 EXON 9 55,452,135 55,452,325 0 2 191
GTGAGCTTAGCCTACGCCTATGAGACCAAGGATGCACTGTGCCTGGTGCTGACATTGATG
AATGGAGGCGACCTAAAGTTCCACATCTACCACATGGGCCAGGCTGGCTTTCCTGAAGCA
CGTGCTGTCTTCTATGCTGCTGAGATCTGCTGTGGCCTGGAAGACCTGCACCGGGAACGC
ATTGTGTACAG
INTRON 9 - 10 55,452,326 55,453,046 721
GTAGGGCGGGGCTCGGGCGGCTGGC..........TGACCCTGTGTTTCTCTCCCCATAG
10 EXON 10 55,453,047 55,453,084 2 1 38
GGACCTAAAGCCAGAGAATATCCTTCTGGATGACCATG
INTRON 10 - 11 55,453,085 55,453,171 87
GTGGGTGAGAAGGCCCAAGTGGGAG..........CACCTGCTTCCATACCCCTACCCAG
11 EXON 11 55,453,172 55,453,261 1 1 90
GCCACATTCGGATCTCGGACCTGGGACTGGCCGTGCATGTGCCTGAGGGCCAGACCATCA
AAGGCCGTGTGGGCACTGTGGGCTACATGG
INTRON 11 - 12 55,453,262 55,454,316 1,055
GTAAGTCCTGTTGACCTAGTACGCC..........GCCCTGACTCCTGGTCCCTGTCCAG
12 EXON 12 55,454,317 55,454,525 1 0 209
CTCCAGAGGTGGTGAGGAATGAGCGCTACACGTTCAGTCCTGACTGGTGGGCGCTAGGCT
GCCTCCTGTACGAGATGATCGCAGGTCAGTCGCCCTTCCAGCAGAGGAAGAAGAAGATAA
AGCGCGAAGAGGTGGAGCGGCTGGTCAAGGAAGTGGCCGAGGAGTACACAGACCGCTTTT
CCTCACAGGCGCGCTCACTCTGTTCTCAG
INTRON 12 - 13 55,454,526 55,454,605 80
GTACAAGCCAGAGTCTTAGCTGGGG..........CCTCACCACCACTGCCCTTCTATAG
13 EXON 13 55,454,606 55,454,743 0 0 138
CTTCTCAGCAAGGACCCTGCTGAGCGCCTGGGGTGTCGTGGAGGTGGCGCCCGTGAGGTA
AAGGAGCACCCCCTTTTCAAGAAACTGAATTTCAAGCGGCTGGGAGCTGGCATGCTAGAG
CCACCTTTTAAGCCTGAT
INTRON 13 - 14 55,454,744 55,458,792 4,049
GTAAGTCCTGCCCTCCCTTGCTAGT..........CTGACTCCTGCCTCTTCCACCTTAG
14 EXON 14 55,458,793 55,458,930 0 0 138
CCCCAGGCTATTTATTGCAAGGATGTCCTGGACATTGAACAGTTCTCTACAGTTAAAGGT
GTGGATCTGGAGCCCACAGACCAAGACTTCTACCAGAAGTTTGCCACGGGCAGTGTGTCC
ATCCCCTGGCAGAATGAG
INTRON 14 - 15 55,458,931 55,459,012 82
GTAGGGATTATCCTGTGACTGGGAT..........CTCACCGCTTCCTGTTCCTGGGTAG
15 EXON 15 55,459,013 55,459,147 0 0 135
ATGGTGGAGACCGAGTGCTTCCAGGAACTCAATGTCTTTGGGCTGGATGGGTCTGTTCCC
CCAGACCTGGACTGGAAGGGCCAGCCCACTGCACCCCCCAAGAAGGGATTGCTACAGAGA
CTCTTCAGTCGCCAA
INTRON 15 - 16 55,459,148 55,459,332 185
GTAAGTCCTAGCAGTGTCTGCCCTG..........CTCATGGCCTCTTTTCTCTTTCCAG
16 EXON 16 55,459,333 55,459,577 0 - 245
AGGTGAGCAGTGTGGGCTCCCCATGGGTTGGCCTTGCTGCCTGACTGTGGGGAGCCCCAG
GCAGCCCATCCGAGGCAGAGGCGAGATGTAGGAGAAAGAAGTCTGGTGTCCACCTTACCC
GCTCCTTCCCTGCCGCTTGCCTCCCTGCACCCTGACCCCTTCAAGCTGCTAACCTTGCTT
AGCAACTGTCTCCTTGTGCCAGAGTCTGTTCAGGGGGATGGACAGAGGCCTTGCTCTGAC
AGATC
3' upstream sequence
TTGGGAGCTTCCTAGTCTTACTTCAGTCTGTCGCCAGAAAGCCGTACCCTGACACCACCC
GTATTTGGCCGAGCTGCTGCTCTAAGCCTCTCGTGGGAAGCCCACAACCCTCTCTGGGCA
GAACACTGGCCTTGGTCTGCCTTAGTGGTGACTAACAGCAACGCTGTGCCTCTCTCTCTC
CCTTCATGTCTTCCCTGTCCCTCCAGGATTGCTGTGGGAACTGCAGCGACAGTGAGGAAG
AGCTCCCCACCCGCCTCTAGCCCCCAGGCCGAGGCCCCCACCGGCGGTTGGCGGTAGCAG
CTACTCTCAGTGACGTTTACAGTTTTGCACAGTGGTGTTCCCCATTTTCCACGCAAGCCG
TGGATTGTGGAACACAGCCGGAACTGTCCCCAGTGTCCTCCGTTCCTCAGCCACTGGCCT
AGCTGAGTTTGACAAGGCCTGGGCCATCTTGGGACAAAGGTGCGTCCCTTCAGCTCTCTG
TGGAGCTCGGGGCTTTATGTATTTATGTATTTGTATGAATGTATATAGCTACTAGAGCGT
TCTTAATTCCACCCTGGACCTGGACACCCCAGGGCAATTAGCCCTGGCCAGGAAAGCCAG
GAGCTGGCAAGAGGAGCCAGTGCCAAACTCCAGGCTTCTAGGGCCCAGTGGAGATGAGCA
AGCAGAGAGTGGGCCAGGTCAGACCTCTGCCCACAGCACTGCACTGGCCACCACCAACCT
CCAAGTGAGACTTGTGCCTGCCTGTTGTGGACTGAGGCCACCACCTTCTGGTTGCCTAAT
GCATTCCCTCTTTCTCAGCATTTGTCAGGGTTGGAGCTGGGGTCTTTGTATCCTCTAGGA
CTGGGACATAGTTTAACCCCAGACTTAGCTGAGTGGGACCCATCAAACCACTGCCCGAGA
TGGGTCGCTTTCTGCCTTCCAGCTCCCAGAGCACAGTAGTCCTTATTCTGGGTCATATCC
TGAAGACACCTTTTTCAGAAATGCCCCAGTCCAGGCCATA..........

Sequence Detail Report

Gene Symbol (Gene ID) Grk6 (ENSMUSG00000074886)
Transcript ID ENSMUST00000099482
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 561 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information