MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Tspan17 (ENSMUSG00000025875)

Cross Reference

EMBL	AC160106, AC162526
GO	GO:0016021, GO:0019899, GO:0072594
goslim_goa	GO:0003674, GO:0005575, GO:0008150, ...show all
MGI_trans_name	Tspan17-009
OTTP	OTTMUSP00000050784
OTTT	OTTMUST00000092048
UCSC	uc007qpl.2
UniParc	UPI0001F78F1D
Uniprot/SPTREMBL	E9QN85
Vega_transcript	OTTMUST00000092048, Tspan17-009

Vega_translation

214538, OTTMUSP00000050784

Definition

protein_id:ENSMUSP00000097102
translation:

MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGG
LDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDW
IRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRE
RCGVPFSCCVRDPAEDVLNTQCGYDIRLKLVRRELEQQGSIYTKGCVGQFEKWLQDNLIV
VAGVLVGIALLQIFGLCLAQNLVSDIKAVKANW

Chromosome

Length
Position(start - end)

6,626
54,789,595 - 54,796,222

Orient to Chromosome

plus

Link

Location : (13:54789595-54796222)
/

Detail Map

name	Eif4e1b (ENSMUSG00000074895)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Eif4e1b note : eukaryotic translation initiation factor 4E family member 1B [Source:MGI Symbol;Acc:MGI:2685119]

name	Tspan17 (ENSMUSG00000025875)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Tspan17 note : tetraspanin 17 [Source:MGI Symbol;Acc:MGI:1921507]

name	Eif4e1b (ENSMUSG00000074895)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000132728

name	Eif4e1b (ENSMUSG00000074895)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000110003

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000026993

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000131692

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000163796

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000163915

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000099503

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000171859

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000130568

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000145574

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26536.1 RefSeq_peptide:NP_083117 RefSeq_mRNA:NM_028841.3 Vega_transcript:OTTMUST00000081270 Vega_transcript:Tspan17-001 Uniprot/SPTREMBL:Q3TAQ3 UCSC:uc007qpl.2 Fantom:F830004H06 EMBL:AC160106 EMBL:AC162526 EMBL:AK171691 EMBL:CH467070 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-001 Vega_translation:214534 Vega_translation:OTTMUSP00000043443 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 protein_id:BAE42615.1 protein_id:EDL01070.1 OTTP:OTTMUSP00000043443 OTTT:OTTMUST00000081270 UniParc:UPI000002271A
definition	note : transcript_id=ENSMUST00000026993 protein_id : ENSMUSP00000026993 translation : MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQIFGLCLAQNLVSDIKAVKANW

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide_predicted:XP_006517477.1 Vega_transcript:OTTMUST00000081271 Vega_transcript:Tspan17-002 Uniprot/SPTREMBL:Q3TLW9 UCSC:uc007qpm.2 Fantom:G830027P05 EMBL:AC160106 EMBL:AC162526 EMBL:AK166272 EMBL:CH467070 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-002 Vega_translation:214535 Vega_translation:OTTMUSP00000043444 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 protein_id:BAE38673.1 protein_id:EDL01068.1 OTTP:OTTMUSP00000043444 OTTT:OTTMUST00000081271 UniParc:UPI00005B222E
definition	note : transcript_id=ENSMUST00000131692 protein_id : ENSMUSP00000115287 translation : MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQIFGLCLAQNLVSDIKAVKANWITLGDGYKRLNKQHF

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000092046 Vega_transcript:Tspan17-007 Uniprot/SPTREMBL:E9PWC3 UCSC:uc007qpl.2 EMBL:AC160106 EMBL:AC162526 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-007 Vega_translation:214536 Vega_translation:OTTMUSP00000050782 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 OTTP:OTTMUSP00000050782 OTTT:OTTMUST00000092046 UniParc:UPI0001F78F1B
definition	note : transcript_id=ENSMUST00000163796 protein_id : ENSMUSP00000131671 translation : MPGKHQQFQDPEVGCCGKYFLFGFNIVFWFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQIFGLCLAQNL

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000092047 Vega_transcript:Tspan17-006 Uniprot/SPTREMBL:E9QAJ5 UCSC:uc007qpl.2 EMBL:AC160106 EMBL:AC162526 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-006 Vega_translation:214537 Vega_translation:OTTMUSP00000050783 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 OTTP:OTTMUSP00000050783 OTTT:OTTMUST00000092047 UniParc:UPI0001F78F1C
definition	note : transcript_id=ENSMUST00000163915 protein_id : ENSMUSP00000130765 translation : MPGKHQQFQDPEVGCCGKYFLFGFNIVFWFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQVQPWLAHPPPA

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000092048 Vega_transcript:Tspan17-009 Uniprot/SPTREMBL:E9QN85 UCSC:uc007qpl.2 EMBL:AC160106 EMBL:AC162526 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-009 Vega_translation:214538 Vega_translation:OTTMUSP00000050784 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 OTTP:OTTMUSP00000050784 OTTT:OTTMUST00000092048 UniParc:UPI0001F78F1D
definition	note : transcript_id=ENSMUST00000099503 protein_id : ENSMUSP00000097102 translation : MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDIRLKLVRRELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQIFGLCLAQNLVSDIKAVKANW

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000092049 Vega_transcript:Tspan17-008 Uniprot/SPTREMBL:F7CRB7 UCSC:uc007qpl.2 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-008 Vega_translation:214539 Vega_translation:OTTMUSP00000050785 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 OTTP:OTTMUSP00000050785 OTTT:OTTMUST00000092049 UniParc:UPI0001F78F1E
definition	codon_start : 2 note : transcript_id=ENSMUST00000171859 protein_id : ENSMUSP00000128568 translation : XKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGV

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081274 Vega_transcript:Tspan17-005 Uniprot/SPTREMBL:F6VW20 UCSC:uc007qpl.2 EMBL:AC160106 EMBL:AC162526 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-005 Vega_translation:214540 Vega_translation:OTTMUSP00000043446 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 OTTP:OTTMUSP00000043446 OTTT:OTTMUST00000081274 UniParc:UPI0001889D0B
definition	note : transcript_id=ENSMUST00000130568 protein_id : ENSMUSP00000123607 translation : GVLSNISALTDLGGLDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAMSSIPSVAMTSDSNWSSSSRAPSTPKAVWASLRSGYKTT

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081272 Vega_transcript:Tspan17-003 Uniprot/SPTREMBL:F6R550 UCSC:uc007qpl.2 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-003 Vega_translation:214541 Vega_translation:OTTMUSP00000043445 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 OTTP:OTTMUSP00000043445 OTTT:OTTMUST00000081272 UniParc:UPI0001889D0A
definition	codon_start : 2 note : transcript_id=ENSMUST00000145574 protein_id : ENSMUSP00000119687 translation : XFLLKFFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQIFGLCLAQNLVSDIKAVKANWSLLSQTSPYSP

name
type	misc_feature
link
xref
definition	note : contig AC162526.3 61529..219418(1)

name
type	misc_feature
link
xref
definition	note : contig AC160106.2 1..152276(-1)

name	Tspan17 (ENSMUSG00000025875)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081273 Vega_transcript:OTTMUST00000081273 MGI_trans_name:Tspan17-004 OTTT:OTTMUST00000081273
definition	note : retained_intron note : transcript_id=ENSMUST00000139574

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Tspan17 (ENSMUSG00000025875)
Transcript ID	ENSMUST00000099503

Reports
substitution
cSNPs	2
Insertion	3
Deletion	14
SNPs	-1kb 54784633(c.-4962A>T), 54784761(c.-4834G>A), 54784787(c.-4808G>A), 54784863(c.-4732G>A), 54784928(c.-4667G>T), 54785096(c.-4499C>T), 54785193(c.-4402G>A), 54785458(c.-4137G>A), 54785672(c.-3923C>T), 54785766(c.-3829T>C), 54785896(c.-3699G>T), 54786164(c.-3431T>C), 54786368(c.-3227G>T), 54786378(c.-3217T>C), 54786416(c.-3179A>G), 54786424(c.-3171G>A), 54786525(c.-3070G>A), 54786764(c.-2831A>G), 54786835(c.-2760C>T), 54786869(c.-2726T>C), 54786938(c.-2657T>C), 54786971(c.-2624C>T), 54787016(c.-2579A>G), 54787083(c.-2512T>A), 54787109(c.-2486C>T), 54787126(c.-2469T>G), 54787504(c.-2091A>T), 54787637(c.-1958C>T), 54787650(c.-1945C>T), 54787814(c.-1781G>C), 54788010(c.-1585T>C), 54788291(c.-1304A>G), 54788320(c.-1275A>G), 54788542(c.-1053A>G), 54788753(c.-842C>A), 54788754(c.-841T>G), 54788865(c.-730C>T), 54788960(c.-635A>G), 54788990(c.-605G>C), 5'UTR CDS 54792830(c.229T>C), 54793365(c.456C>T), 3'UTR INTRON 54789760(c.87+79C>T), 54789812(c.87+131C>T), 54790004(c.87+323A>G), 54790051(c.87+370C>T), 54790369(c.87+688C>T), 54790400(c.87+719G>T), 54790540(c.87+859T>G), 54790542(c.87+861G>A), 54790546(c.87+865A>G), 54790588(c.87+907G>A), 54790639(c.87+958C>G), 54790677(c.87+996C>T), 54790710(c.87+1029T>C), 54790719(c.87+1038C>A), 54790739(c.87+1058A>G), 54790824(c.87+1143G>A), 54790831(c.87+1150A>G), 54790992(c.87+1311G>T), 54791033(c.87+1352T>C), 54791069(c.87+1388G>A), 54791080(c.87+1399G>A), 54791305(c.88-1304A>C), 54791426(c.88-1183A>G), 54791500(c.88-1109T>C), 54791584(c.88-1025T>C), 54791648(c.88-961G>A), 54791738(c.88-871C>T), 54791756(c.88-853C>T), 54791784(c.88-825G>C), 54791826(c.88-783C>G), 54791856(c.88-753G>A), 54791946(c.88-663A>G), 54791948(c.88-661A>G), 54791949(c.88-660C>T), 54791987(c.88-622C>T), 54792074(c.88-535C>T), 54792477(c.88-132T>C), 54792529(c.88-80T>C), 54792537(c.88-72C>T), 54793022(c.285+136G>A), 54793051(c.286-144G>A), 54793078(c.286-117A>G), 54793085(c.286-110G>A), 54793100(c.286-95G>T), 54793101(c.286-94A>T), 54793107(c.286-88A>G), 54793372(c.456+7G>A), 54793384(c.456+19C>T), 54793424(c.456+59C>G), 54793498(c.456+133A>G), 54793509(c.456+144G>A), 54793557(c.456+192G>A), 54793803(c.456+438C>A), 54793886(c.456+521C>T), 54793891(c.456+526A>G), 54793897(c.456+532C>T), 54793933(c.456+568T>C), 54794342(c.457-711A>T), 54794343(c.457-710A>C), 54794381(c.457-672A>G), 54794421(c.457-632G>A), 54794505(c.457-548A>G), 54794522(c.457-531A>T), 54794524(c.457-529A>G), 54794575(c.457-478T>C), 54794777(c.457-276A>G), 54794995(c.457-58G>A), 54795028(c.457-25C>A), 54795046(c.457-7C>A), 54795314(c.583-97G>A), 54795356(c.583-55G>A), 54795366(c.583-45G>A), 54795368(c.583-43T>G), 54795394(c.583-17A>G), 54795619(c.639+152G>A), 54795829(c.640-137C>A), +1kb 54796320(c.98C>T), 54796883(c.661T>C), 54796920(c.698A>G), 54797581(c.1359A>C), 54797669(c.1447A>G), 54797670(c.1448A>G), 54797796(c.1574G>A), 54797833(c.1611T>C), 54797852(c.1630A>G), 54797876(c.1654C>T), 54797877(c.1655T>G), 54797879(c.1657G>A), 54797905(c.1683C>T), 54797913(c.1691G>A), 54797917(c.1695G>A), 54798139(c.1917C>A), 54798168(c.1946T>C), 54798228(c.2006G>A), 54798238(c.2016C>T), 54798321(c.2099G>A), 54798510(c.2288A>G), 54798588(c.2366A>G), 54798642(c.2420A>G), 54798684(c.2462T>C), 54798702(c.2480C>T), 54799299(c.3077A>C), 54799788(c.3566A>G), 54799961(c.3739A>G), 54799994(c.3772A>G), 54800002(c.3780C>T), 54800023(c.3801C>T), 54800040(c.3818C>T), 54800089(c.3867G>C), 54800169(c.3947G>A), 54800193(c.3971G>A), 54800199(c.3977C>T), 54800211(c.3989A>G), 54800265(c.4043C>T), 54800831(c.4609G>A), 54801048(c.4826C>A), 54801050(c.4828T>C), 54801061(c.4839T>G),
Insertions	-1kb 54785978 (c.-3617dupT), 5'UTR CDS 3'UTR INTRON 54792394 (c.88-212dupG), +1kb 54798624 (c.2402_2403insGG),
Deletions	-1kb 54785714 (c.-3880delG), 54787456 (c.-2138_-2131delACTATACT), 54787992 (c.-1602_-1599delTCTC), 54788162 (c.-1432_-1427delTCCCTC), 54788182 (c.-1412_-1411delCC), 54788190 (c.-1404_-1403delCC), 54788613 (c.-981_-977delTGGCA), 54788972 (c.-622_-619delAAAA), 5'UTR CDS 3'UTR INTRON 54790661 (c.87+982_87+985delGAGT), 54791329 (c.88-1275_88-1271delTAGAG), 54791340 (c.88-1268_88-1264delTAGAG), 54792688 (c.138+34_138+38delAGGGG), 54793400 (c.456+36delA), +1kb 54799789 (c.3568_3574delTCCTACA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	0
synonymous substitutions	54792830 (p.Leu77Leu), 54793365 (p.Tyr152Tyr),
non-synonymous substitutions
B6 transcript (ENSMUST00000099503)	MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGG LDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDW IRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRE RCGVPFSCCVRDPAEDVLNTQCGYDIRLKLVRRELEQQGSIYTKGCVGQFEKWLQDNLIV VAGVLVGIALLQIFGLCLAQNLVSDIKAVKANW*
MSMv4 transcript	MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGG LDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDW IRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRE RCGVPFSCCVRDPAEDVLNTQCGYDIRLKLVRRELEQQGSIYTKGCVGQFEKWLQDNLIV VAGVLVGIALLQIFGLCLAQNLVSDIKAVKANW*
homology	100.00 (274 / 274)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Tspan17 (ENSMUSG00000025875)
Transcript ID	ENSMUST00000099503


..........AGGCAAAACAGAACAGGCGTGGCATGGCACGCCAGCCTGTTTGTATTCAA
CTACACTGTGTGTGAATGCATGGCACTGTTCATTGGTCCCACTATTCCCAACCACTTATC
CCTGGGGAGTGGACTCCTCTGGTTCTTGAATCTTAGACTGGAGATCCAAGGTAATTATTC
ACACTTGGCTCACCAGCTTTGCCAGTTGGCTCATCTGGGGCCTCTGGAGGACTTGGGGAA
CTTGAGAGAAGCTAACTGGAGGACGGACTTAGAGAGGAGATGGGGACTCTTCAGAGGTGG
GGGTTGCAAGGGGTTGAGTGTGACTGGGGTGTAGCCAAAGCCTGGCCCAGAGGCAGGGTC
TTGGGGAGAAGTGAGGCCTGTGGACCATAAAAAAAAAAAAAAGACCGATGTCTTGGGCGT
GGCTCCAAGAAGGCCGACTGTGGCTCAGAACTGAGGCTGAGTAGGGCGGAGCTCCAGGAG
GACTGAGGCCGGTTGGAGGCGGGGTTTGGGGCTCATCAGAGGCGGGACCCGGTTTAGAGG
CGGAGCTCGAGAACAGAAGTTAGCTAGGGCAGAGCCTTGGGCGGGGCGTAGGCGGGACTG
CGGGAGGACAGCGGCTAGGCATGGGCGGAGCCTGAGAGGATTAAGCCCGGCTGGGGGCGG
AGTCGTGGTTATGGGCGGGGCCCGTGAGGACTGAACTTGACTGGGACGGGGTCGTGGGCG
GGGCTCCAAGAAGACCGAGCCTTGCTGGGGCGGGGTGTGGACTGACACTGTGGGCGGGGC
CGGAGCGCTGTTGGAGGGCGGGGTCGGATGAGGGCACCGCACTCCGGGTGTGGCTGTCCG
AGCGCCGTGGGCGGTGCCACAGCGGGCGGGGCAGCCGGTGAGCTGTGTGGCTTTGACCAT
GAAGCCGCAGCCACCGGGCTAGGCCCGGGGCTGCTCCAGGCCTGGGCGGCCCGCAGAGGG
CTGGGCCGGTCACCGGCTCGGGTTCCCGGGACGGCAGGTGGCCGCTCACC
ATGCCCGGCAAGCACCAGCAATTCCAGGACCCTGAGGTCGGCTGCTGCGGGAAATACTTCCTGTTTGGCTTCAACATTGTCTTCTGG
GTGAGCGCGAGTCCGCTTCTCGCTC..........CCCTGAACTCTCCCTGCTGTTGTAG
GTGCTGGGAGCCCTGTTCCTGGCCATTGGCCTCTGGGCCTGGGGTGAGAAG
GTAAGAGGGAGGGGCTGCCCAGGGG..........CACACTTGTCTGCTCCCCGGTGCAG
GGCGTTCTCTCCAACATCTCGGCGCTGACAGATCTGGGCGGTCTTGACCCCGTGTGGCTGTTTGTGGTGGTGGGGGGAGTCATGTCAGTGCTGGGCTTCGCCGGCTGCATTGGGGCCCTCCGGGAAAACACCTTCCTGCTCAAGTTC
GTGAGTCTTTCTCTAAGTCTCTCTC..........CATCATCTGTGTGCCCCCAACCCAG
TTCTCTGTGTTCCTCGGCCTCATCTTCTTCCTGGAGCTGGCCGCGGGGATCCTGGCCTTCGTCTTCAAGGATTGGATCCGAGACCAACTTAATCTCTTCATCAACAACAATGTCAAAGCCTACCGGGATGATCTCGACCTTCAGAACCTTATCGACTTTGCTCAGGAATAT
GTGAGTATGGGCCTCATGTGTGTGA..........ACTCTGGACTCTTCTCTCACCCTAG
TGGTCTTGCTGTGGTGCCCGAGGGCCCAATGACTGGAACCTCAATATCTACTTCAACTGCACTGACTTGAACCCAAGCCGTGAGCGCTGTGGGGTGCCCTTTTCCTGCTGTGTTAGGGACCCAGCG
GTGAGTGGGCCCTGGGAGGAGGGAG..........TTGCTAATGGCCTGTCTCCCCTCAG
GAAGATGTCCTCAATACCCAGTGTGGCTATGACATCCGACTCAAACTGGTGAGAAGG
GTGGGGACAGGGTTGAGGGTAGCCT..........CGAGCTTGGTCTCGTGTCTCCTCAG
GAGCTCGAGCAGCAGGGCTCCATCTACACCAAAGGCTGTGTGGGCCAGTTTGAGAAGTGGCTACAAGACAACCTGATCGTGGTGGCCGGGGTCTTGGTGGGGATCGCCCTCCTCCAG
GTACAGCCTTGGCTTGCCCACCCTC..........TCCTCACCTGCTCTCTGTCTTGCAG
ATATTTGGCCTCTGCTTGGCCCAGAACCTCGTGAGTGACATCAAGGCGGTGAAGGCCAACTGGTGA
GGCTGCCAGGGGTGATGGCCATGTGCCTGGCCCGTGGGGCTCTAGTGGGGGCCTCCCAGG
ACACTCTGCCTCGCTCACAATGGCAAGGCCTGTGGGATGTCTGTTACGACCTGAGCCGGA
GGTTTTGTGACCTTGGTGCTCATTACCCACTGAGGAAACCATTGGGGACTAGACTGGGGC
TGTTTGCCACAGAGCTCTGTGTCGGGGGTGTGTACCTGTGTGTGTGCATGCACACTCGTA
AGTGCACCTGGAGTCTCTACCCTGCTGCTGTGAGGTGGTGGCCCTTCCAGAGCTCGTGGG
GGGGGGGCAGATGGAGGGTAGGGCAGGCACCTGTGTCCCCTGGTCTACTGTGGGATGTAT
CTGTGTGTGGCTTAGGAGCCTGCTGTCTCAGACCTCTCCATACTCACCATGACTTTGAGC
CTGCCTGGAGCTTGTCTTGGCCTCAGTGTCACAGCCTCTGAAATGGGTCCAAGAATTCTC
TCTCTCGCTTGCCTCTCAGGATCACACTTGGCGATGGCTACAAACGACTCAATAAACAAC
ACTTTGAAAAACAGTGGTGGTTTATGTTCACCGTCTTCGAAGGTTCTGTTGGCAGCGTGG
CCTCTACAGAGCTCTCCAGTGAGGAGGACCCTGGCCTGAATCCAACCAAGGCCTCTTAGG
CCTGGGTAGACTATGCATTTGAGACAGCCTTTCAAACGGGTATATTGCCTTAAAGGTCAC
ATCTCCTGTTCCCCCTGGGCAATGGCTGTGTCATCTACAGTGGGACACAGAGGCAGCTCC
CCTGGTCTGTTCTATGTACCTGACCGCTAGTATCTGAGAGTTGACCTTTCCAACCTCTGT
AGGTTACTCCTGGCATACACCTCAATGCTGTTATGTCTCAGCCTCAAGAAAGGCATAAAG
GAGCCGGGCGTTAGTGGCGCTCGCCTTTAATCCCAGCACTGGGGAGGCAGAGGCAGAGGC
AGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCT..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AGGCAAAACAGAACAGGCGTGGCATGGCACGCCAGCCTGTTTGTATTCAA CTACACTGTGTGTGAATGCATGGCACTGTTCATTGGTCCCACTATTCCCAACCACTTATC CCTGGGGAGTGGACTCCTCTGGTTCTTGAATCTTAGACTGGAGATCCAAGGTAATTATTC ACACTTGGCTCACCAGCTTTGCCAGTTGGCTCATCTGGGGCCTCTGGAGGACTTGGGGAA CTTGAGAGAAGCTAACTGGAGGACGGACTTAGAGAGGAGATGGGGACTCTTCAGAGGTGG GGGTTGCAAGGGGTTGAGTGTGACTGGGGTGTAGCCAAAGCCTGGCCCAGAGGCAGGGTC TTGGGGAGAAGTGAGGCCTGTGGACCATAAAAAAAAAAAAAAGACCGATGTCTTGGGCGT GGCTCCAAGAAGGCCGACTGTGGCTCAGAACTGAGGCTGAGTAGGGCGGAGCTCCAGGAG GACTGAGGCCGGTTGGAGGCGGGGTTTGGGGCTCATCAGAGGCGGGACCCGGTTTAGAGG CGGAGCTCGAGAACAGAAGTTAGCTAGGGCAGAGCCTTGGGCGGGGCGTAGGCGGGACTG CGGGAGGACAGCGGCTAGGCATGGGCGGAGCCTGAGAGGATTAAGCCCGGCTGGGGGCGG AGTCGTGGTTATGGGCGGGGCCCGTGAGGACTGAACTTGACTGGGACGGGGTCGTGGGCG GGGCTCCAAGAAGACCGAGCCTTGCTGGGGCGGGGTGTGGACTGACACTGTGGGCGGGGC CGGAGCGCTGTTGGAGGGCGGGGTCGGATGAGGGCACCGCACTCCGGGTGTGGCTGTCCG AGCGCCGTGGGCGGTGCCACAGCGGGCGGGGCAGCCGGTGAGCTGTGTGGCTTTGACCAT GAAGCCGCAGCCACCGGGCTAGGCCCGGGGCTGCTCCAGGCCTGGGCGGCCCGCAGAGGG CTGGGCCGGTCACCGGCTCGGGTTCCCGGGACGGCAGGTGGCCGCTCACC
1	EXON 1	54,789,595	54,789,681	-	0	87	ATGCCCGGCAAGCACCAGCAATTCCAGGACCCTGAGGTCGGCTGCTGCGGGAAATACTTC CTGTTTGGCTTCAACATTGTCTTCTGG
	INTRON 1 - 2	54,789,682	54,792,608			2,927	GTGAGCGCGAGTCCGCTTCTCGCTC..........CCCTGAACTCTCCCTGCTGTTGTAG
2	EXON 2	54,792,609	54,792,659	0	0	51	GTGCTGGGAGCCCTGTTCCTGGCCATTGGCCTCTGGGCCTGGGGTGAGAAG
	INTRON 2 - 3	54,792,660	54,792,739			80	GTAAGAGGGAGGGGCTGCCCAGGGG..........CACACTTGTCTGCTCCCCGGTGCAG
3	EXON 3	54,792,740	54,792,886	0	0	147	GGCGTTCTCTCCAACATCTCGGCGCTGACAGATCTGGGCGGTCTTGACCCCGTGTGGCTG TTTGTGGTGGTGGGGGGAGTCATGTCAGTGCTGGGCTTCGCCGGCTGCATTGGGGCCCTC CGGGAAAACACCTTCCTGCTCAAGTTC
	INTRON 3 - 4	54,792,887	54,793,194			308	GTGAGTCTTTCTCTAAGTCTCTCTC..........CATCATCTGTGTGCCCCCAACCCAG
4	EXON 4	54,793,195	54,793,365	0	0	171	TTCTCTGTGTTCCTCGGCCTCATCTTCTTCCTGGAGCTGGCCGCGGGGATCCTGGCCTTC GTCTTCAAGGATTGGATCCGAGACCAACTTAATCTCTTCATCAACAACAATGTCAAAGCC TACCGGGATGATCTCGACCTTCAGAACCTTATCGACTTTGCTCAGGAATAT
	INTRON 4 - 5	54,793,366	54,795,052			1,687	GTGAGTATGGGCCTCATGTGTGTGA..........ACTCTGGACTCTTCTCTCACCCTAG
5	EXON 5	54,795,053	54,795,178	0	0	126	TGGTCTTGCTGTGGTGCCCGAGGGCCCAATGACTGGAACCTCAATATCTACTTCAACTGC ACTGACTTGAACCCAAGCCGTGAGCGCTGTGGGGTGCCCTTTTCCTGCTGTGTTAGGGAC CCAGCG
	INTRON 5 - 6	54,795,179	54,795,410			232	GTGAGTGGGCCCTGGGAGGAGGGAG..........TTGCTAATGGCCTGTCTCCCCTCAG
6	EXON 6	54,795,411	54,795,467	0	0	57	GAAGATGTCCTCAATACCCAGTGTGGCTATGACATCCGACTCAAACTGGTGAGAAGG
	INTRON 6 - 7	54,795,468	54,795,965			498	GTGGGGACAGGGTTGAGGGTAGCCT..........CGAGCTTGGTCTCGTGTCTCCTCAG
7	EXON 7	54,795,966	54,796,082	0	0	117	GAGCTCGAGCAGCAGGGCTCCATCTACACCAAAGGCTGTGTGGGCCAGTTTGAGAAGTGG CTACAAGACAACCTGATCGTGGTGGCCGGGGTCTTGGTGGGGATCGCCCTCCTCCAG
	INTRON 7 - 8	54,796,083	54,796,156			74	GTACAGCCTTGGCTTGCCCACCCTC..........TCCTCACCTGCTCTCTGTCTTGCAG
8	EXON 8	54,796,157	54,796,222	0	-	66	ATATTTGGCCTCTGCTTGGCCCAGAACCTCGTGAGTGACATCAAGGCGGTGAAGGCCAAC TGGTGA
	3' upstream sequence						GGCTGCCAGGGGTGATGGCCATGTGCCTGGCCCGTGGGGCTCTAGTGGGGGCCTCCCAGG ACACTCTGCCTCGCTCACAATGGCAAGGCCTGTGGGATGTCTGTTACGACCTGAGCCGGA GGTTTTGTGACCTTGGTGCTCATTACCCACTGAGGAAACCATTGGGGACTAGACTGGGGC TGTTTGCCACAGAGCTCTGTGTCGGGGGTGTGTACCTGTGTGTGTGCATGCACACTCGTA AGTGCACCTGGAGTCTCTACCCTGCTGCTGTGAGGTGGTGGCCCTTCCAGAGCTCGTGGG GGGGGGGCAGATGGAGGGTAGGGCAGGCACCTGTGTCCCCTGGTCTACTGTGGGATGTAT CTGTGTGTGGCTTAGGAGCCTGCTGTCTCAGACCTCTCCATACTCACCATGACTTTGAGC CTGCCTGGAGCTTGTCTTGGCCTCAGTGTCACAGCCTCTGAAATGGGTCCAAGAATTCTC TCTCTCGCTTGCCTCTCAGGATCACACTTGGCGATGGCTACAAACGACTCAATAAACAAC ACTTTGAAAAACAGTGGTGGTTTATGTTCACCGTCTTCGAAGGTTCTGTTGGCAGCGTGG CCTCTACAGAGCTCTCCAGTGAGGAGGACCCTGGCCTGAATCCAACCAAGGCCTCTTAGG CCTGGGTAGACTATGCATTTGAGACAGCCTTTCAAACGGGTATATTGCCTTAAAGGTCAC ATCTCCTGTTCCCCCTGGGCAATGGCTGTGTCATCTACAGTGGGACACAGAGGCAGCTCC CCTGGTCTGTTCTATGTACCTGACCGCTAGTATCTGAGAGTTGACCTTTCCAACCTCTGT AGGTTACTCCTGGCATACACCTCAATGCTGTTATGTCTCAGCCTCAAGAAAGGCATAAAG GAGCCGGGCGTTAGTGGCGCTCGCCTTTAATCCCAGCACTGGGGAGGCAGAGGCAGAGGC AGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Tspan17 (ENSMUSG00000025875)
Transcript ID	ENSMUST00000099503

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 274 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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