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Target CDS Information

Gene Symbol (Gene ID) Smarca2 (ENSMUSG00000024921)
Cross Reference
EMBL AC118249, AC118472
GO GO:0000790, GO:0001105, GO:0005515, ...show all
goslim_goa GO:0000228, GO:0000988, GO:0003674, ...show all
MGI_trans_name Smarca2-002
OTTP OTTMUSP00000058198
OTTT OTTMUST00000104063
UCSC uc008hbn.1
UniParc UPI0000D8ACEB
Uniprot/SPTREMBL E9QAB8
Vega_transcript OTTMUST00000104063, Smarca2-002
Vega_translation 222479, OTTMUSP00000058198
Definition protein_id:ENSMUSP00000097135
translation:
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPLSTM
GSADFPQEGMHQLHKPMDGIHDKGIVEDVHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGALIPGDPQAMNQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQQQQQQQQ
QPQQPQQQAQAQPQQQQQQQQQPALVSYNRPSGPGQELLLSGQSAPQKLSAPAPSGRPSP
APQAAVQPTATAVPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYR
LQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETA
LNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSV
AGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYL
LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGEPALGPDGEPIDESSQ
MSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESESDYEEEDEEE
ESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAIS
ERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH
KRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTT
YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLP
ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRR
LKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTI
MQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRV
LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG
GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK
YKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEE
FDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSR
QRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRRG
RPPAEKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPCNSQLEIEGNRSESVIISIGAW
ETWRKTSCFSVTTHRHSTWKDPRSTKTPLSYSQCLRVLGRKLPKKKRVRKKAMKKRKKMM
KRSRSQRRNL

Chromosome 19
Length
Position(start - end)
156,391
26,619,720 - 26,776,112
Orient to Chromosome plus
Link Location : (19:26619720-26776112)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Smarca2 (ENSMUSG00000024921)
Transcript ID ENSMUST00000099537
Reports
substitution
cSNPs17
Insertion113
Deletion169
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num13
non-synonymous num4
synonymous substitutions 26630719 (p.Ser135Ser), 26630989 (p.Gln225Gln), 26631019 (p.Gln235Gln), 26640446 (p.Pro292Pro), 26640485 (p.Ala305Ala), 26649055 (p.Tyr426Tyr), 26651707 (p.Arg513Arg), 26654343 (p.Ala519Ala), 26681906 (p.His865His), 26683863 (p.Leu953Leu), 26710487 (p.Arg1173Arg), 26716177 (p.Glu1260Glu), 26720917 (p.Ser1328Ser),
non-synonymous substitutions 26631018 (p.Gln235Pro), 26631093 (p.Gln260Pro), 26640423 (p.Ala285Thr), 26774295 (p.Arg1504Gln),
B6 transcript
(ENSMUST00000099537)
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPLSTM
GSADFPQEGMHQLHKPMDGIHDKGIVEDVHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGALIPGDPQAMNQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQQQQQQQQ
QPQQPQQQAQAQPQQQQQQQQQPALVSYNRPSGPGQELLLSGQSAPQKLSAPAPSGRPSP
APQAAVQPTATAVPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYR
LQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETA
LNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSV
AGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYL
LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGEPALGPDGEPIDESSQ
MSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESESDYEEEDEEE
ESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAIS
ERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH
KRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTT
YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLP
ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRR
LKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTI
MQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRV
LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG
GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK
YKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEE
FDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSR
QRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRRG
RPPAEKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPCNSQLEIEGNRSESVIISIGAW
ETWRKTSCFSVTTHRHSTWKDPRSTKTPLSYSQCLRVLGRKLPKKKRVRKKAMKKRKKMM
KRSRSQRRNL*
MSMv4 transcript
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPLSTM
GSADFPQEGMHQLHKPMDGIHDKGIVEDVHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGALIPGDPQAMNQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQQPQQQQQ
QPQQPQQQAQAQPQQQQQQPQQPALVSYNRPSGPGQELLLSGQSTPQKLSAPAPSGRPSP
APQAAVQPTATAVPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYR
LQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETA
LNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSV
AGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYL
LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGEPALGPDGEPIDESSQ
MSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESESDYEEEDEEE
ESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAIS
ERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH
KRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTT
YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLP
ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRR
LKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTI
MQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRV
LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG
GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK
YKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEE
FDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSR
QRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRRG
RPPAEKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPCNSQLEIEGNRSESVIISIGAW
ETWRKTSCFSVTTHRHSTWKDPRSTKTPLSYSQCLRVLGRKLPKKKRVRKKAMKKRKKMM
KRSQSQRRNL*
homology99.74 (1511 / 1511)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Smarca2 (ENSMUSG00000024921)
Transcript ID ENSMUST00000099537
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCCCCTCCCCTCTCTGGGTTTGTTTTCTTTTGCTTGGTGTCTTTCCTTGG
CAAGCGCCGAGGAAGCTGCAGACGCGGGGCGCCTGGGATGGTCTGAGTGTCAGGGGCGCA
CAGGGACCCGGGAGAGCCACGGCGGCTGAGGGCTGGGGAGGCCATGATCCGGATAATCCT
CTCTGCCTGACTGTCACAACAGGACCCGCACGCACCCGGGCAGCGGCCGCGGCGTTCGCC
CGGGAAGGGGAAGGGCTGCAGTGGGGAGGAAACAGGGGGTGGCGAAGGAGGGAGGCGGGG
AGAGCCGGTGGGAGCCTCCTCCTAGCGATGACACTCACCCCTTCCTTCTTGCTCCCTGCT
TTCGAGTTTGCTTTATTCCCATCCCAACATAGTTCACCCCTTCCCTTGCCTCCTCCTCCT
CCCCCATCGCTGGGCTGCCTCCCCTCCCGTTGGCGTTGCAAAACAGGGCCACGCCATCTG
CATAGGTGTCGCGATGTACTTCCCCAAATCACCGGTCCAGCGCGCCAGCCCCTGGGCGCC
CTCCAGCCACCAAGCGCACACCAGCACAGTGCCCCCCGGTGCCCCGCACCAGGCCGCGCA
GCCTGGACGCAGTGACACCGCTCCGGGCGGGGCGCAGCGGTGAGGACTCTAGGGGACACC
CGCGCTCCAGCCCGGGCGCTCACGCCGGTTTCCGGTACCTGCAGGAGATCGCCGGGTGCG
GGTGTCTGCATTCACCCCTGCGGCCTGGATTACATTATTATTTTTTTATACCGGTTGCTA
TTCGCTGCGGATAGTGGTGAGCGCCGGGCTGGTAGGGCTGCCTGGGGGATGGGGGCGGAG
GGAAGTTGGACACCAATCAACCCGGAAAAAAAAAGTTTGGCAGGGCTGCAAGTCGGATGG
AGGGGCTGGAGGGGGCGGCGGGCTGGCGTGAGTGTGCAGTGCGCTAGGGACCAGTGAGTG
GCGAGCTGCGCGGGCTGCGTCTCTAGCCGGAGCACTCCCGGGAGCCGGAC
1 EXON 1 26,607,270 26,607,543 - - 274
GCAGAGCCGGCTGGGTCTGGCGGCGGGAGGCGGTGGCGGTGCGTGCGGCGGCGAGGGTGA
GTGCGTGGCGCGCGCGAGCGGCGGAGAATCAGGAAGTCACCGCGGCGAAGCGCACAGACG
TGTTTGATCGCCGTGACATGACGCGCGCGAGGGAGGAAGAGGAGGTGGCGGGGGCCGGGC
CGCGGGCGCCGGCCTAAGCCGCGCTGTGCACACCGCTCCCTCGCAGCCCCGGGCGGCGCC
AGCTCGAGAGCCCTGGCCGTTCAGCGTCGCCCAG
INTRON 1 - 2 26,607,544 26,619,683 12,140
GTAAGGAGCCGGCTCCTCCCGCTGT..........TTTTTCTTCCTGCTCTCCAACTTAG
2 EXON 2 26,619,684 26,619,944 - 0 261
TGTCACTCTGCTAACTGGCAGAGCCAGGAGACCTAGATGTCCACACCCACAGACCCAGCA
GCAATGCCCCATCCTGGGCCCTCCCCGGGGCCTGGACCCTCTCCTGGACCAATTCTGGGG
CCTAGTCCAGGACCAGGACCATCCCCAGGTTCTGTGCACAGCATGATGGGTCCTAGTCCC
GGACCTCCCAGCGTCTCACATCCTCTGTCAACGATGGGCTCTGCAGACTTCCCACAGGAA
GGCATGCACCAATTACATAAG
INTRON 2 - 3 26,619,945 26,623,880 3,936
GTAAGAGTCTGTGCCCTCTCCCCCA..........AATGGATACCCTTTACATGTTTCAG
3 EXON 3 26,623,881 26,624,010 0 1 130
CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAG
GGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAG
CACAGCCAAG
INTRON 3 - 4 26,624,011 26,630,669 6,659
GTTGGTGGCCACTGCACATTAGATT..........CTGTGATATTATGTTTTTATTTTAG
4 EXON 4 26,630,670 26,631,131 1 1 462
GTTATATGTCACCACATCCGTCTCCTCTGGGAGCCCCGGAGCACGTCTCCAGCCCTATAT
CTGGAGGAGGCCCAACCCCACCCCAGATGCCACCGAGCCAGCCAGGGGCACTCATCCCAG
GAGATCCGCAGGCCATGAACCAGCCTAACAGAGGTCCCTCGCCTTTCAGTCCTGTGCAGC
TGCATCAGCTTCGAGCTCAGATTTTAGCTTACAAAATGTTGGCCAGGGGCCAGCCTCTCC
CTGAAACTCTGCAGCTGGCAGTCCAGGGAAAAAGGACCTTGCCTGGCATGCAGCAGCAGC
AGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCAAC
AACAGCAGCCCCAGCAGCCTCAGCAGCAGGCTCAGGCACAGCCCCAGCAGCAGCAGCAAC
AGCCGCAGCAGCCAGCTCTTGTTAGCTATAATCGACCATCTG
INTRON 4 - 5 26,631,132 26,640,387 9,256
GTAGGTTAATACGCAACCAAATGAA..........TGCTTATGTCCCTTTTGTCTCACAG
5 EXON 5 26,640,388 26,640,649 1 2 262
GCCCCGGGCAGGAGCTGCTACTGAGTGGCCAGAGCACTCCGCAGAAGCTGTCAGCACCGG
CACCAAGCGGCCGACCTTCACCGGCACCCCAGGCCGCAGTCCAGCCCACGGCCACAGCGG
TGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGTCTCCGGTCCTACAGCTGC
AACAGAAGCAGAGCCGCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCGGTGGAGA
TCCTGCAGGAACGAGAGTACAG
INTRON 5 - 6 26,640,650 26,647,020 6,371
GTAGCGCCAGGCCATTCCCAGGACC..........TGTCTTCTTTCTTTTTTCTTTCTAG
6 EXON 6 26,647,021 26,647,147 2 0 127
ACTTCAAGCTCGCATCGCTCATAGGATACAAGAACTGGAAAGTCTGCCTGGTTCCTTGCC
ACCAGATTTACGCACCAAAGCAACCGTGGAACTGAAAGCACTTCGCTTACTCAACTTCCA
ACGTCAG
INTRON 6 - 7 26,647,148 26,648,983 1,836
GTAATACCTTTTTCCCCCGTGATGT..........CTAACCACTATTCTCTTCCTGATAG
7 EXON 7 26,648,984 26,649,157 0 0 174
CTGAGACAGGAGGTGGTGGCCTGCATGCGGAGGGACACCACCCTGGAGACGGCCCTCAAC
TCCAAAGCATACAAGCGGAGCAAGCGCCAGACCCTGCGTGAGGCACGCATGACAGAGAAA
CTGGAGAAGCAGCAGAAGATAGAACAGGAGAGGAAACGCCGGCAGAAACACCAG
INTRON 7 - 8 26,649,158 26,651,548 2,391
GTCCTTAAGCCTGTGCCTGTTCTTC..........TTTCTCTCTCTTGTGTATCCTTTAG
8 EXON 8 26,651,549 26,651,722 0 0 174
GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTG
GCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGG
GAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGGATGCGGAGGCTGATG
INTRON 8 - 9 26,651,723 26,654,340 2,618
GTAAGGCGCCCCATGTGAGACTGAG..........CTGTTGTCCTCCTCTTCCCAATCAG
9 EXON 9 26,654,341 26,654,511 0 0 171
GCTGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCC
TACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCAC
AAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG
INTRON 9 - 10 26,654,512 26,664,050 9,539
GTGAGCTCCAAAGACTGGTTTTAGA..........AACACTTGACTGTGTTGTTTTGCAG
10 EXON 10 26,664,051 26,664,104 0 0 54
AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG
INTRON 10 - 11 26,664,105 26,668,752 4,648
GTAAGGGCCATGCTGGTCACCCCTG..........CTTGATTTCTCTTTGCTCTTTCTAG
11 EXON 11 26,668,753 26,668,883 0 2 131
CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACT
GGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAG
ATGAATCCTGG
INTRON 11 - 12 26,668,884 26,669,113 230
GTATGGTGTTGAAACCGTTGCTGGG..........CATCTCGTCTCCTCCTTTTCCCCAG
12 EXON 12 26,669,114 26,669,171 2 0 58
TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG
INTRON 12 - 13 26,669,172 26,671,083 1,912
GTATGTGGACATCTGTCACTTTGTG..........GGCTGTCTTTCTGGTCTTCCTCCAG
13 EXON 13 26,671,084 26,671,184 0 2 101
GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAAC
AGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA
INTRON 13 - 14 26,671,185 26,672,698 1,514
GTATGTAGGCCTTTCATGACAAGGG..........GGACTTTCCACTTTGTCTTCTTCAG
14 EXON 14 26,672,699 26,672,846 2 0 148
GACTGCGAAGCAGGACGTGGACGACGAATACAGCATGCAGTACAGTGCCAGAGGCTCTCA
GTCCTACTACACGGTGGCTCACGCTATCTCTGAGAGGGTGGAGAAGCAGTCTGCCCTCCT
CATTAACGGCACCCTAAAGCATTACCAG
INTRON 14 - 15 26,672,847 26,676,633 3,787
GTAACTGGTGCGTTTGTGTCCCCGC..........TTGAAACAATTACTCTTCATTTCAG
15 EXON 15 26,676,634 26,676,797 0 2 164
CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCT
GATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAG
CACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC
INTRON 15 - 16 26,676,798 26,678,315 1,518
GTAAGTACAGCCATTTGTCCCTGCA..........TTTTTGTTGTTGTTTCTTTTTGTAG
16 EXON 16 26,678,316 26,678,382 2 0 67
GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTC
TTACAAG
INTRON 16 - 17 26,678,383 26,679,073 691
GTTTGGAGCATTGTGTTTCTATATA..........TCGATGTATTTTTCTTCCCATTCAG
17 EXON 17 26,679,074 26,679,184 0 0 111
GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTC
CTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG
INTRON 17 - 18 26,679,185 26,681,870 2,686
GTATGGTTTTTTTTTCTTTAATTTT..........CTTGGTGCCTTCTTTTGTCCTGCAG
18 EXON 18 26,681,871 26,682,113 0 0 243
ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCATCGGATGAAGAATCACCACTGCAAG
CTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACC
CCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATC
TTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAA
AGG
INTRON 18 - 19 26,682,114 26,683,808 1,695
GTACTGACCAAATGGGGGAGGGGAT..........GAATTCACATAGGTTCGTTTTGCAG
19 EXON 19 26,683,809 26,683,922 0 0 114
GTGGACCTGAACGAAGAAGAAACGATTTTGATCATCAGGCGTCTACACAAGGTGTTGAGA
CCCTTTTTACTGAGGAGGCTGAAGAAAGAGGTTGAGTCTCAGCTTCCGGAAAAG
INTRON 19 - 20 26,683,923 26,691,344 7,422
GTGAGTCACAGATAAGAGTCGTGGG..........ACTTACCCCTGTTCTCTGTCCCCAG
20 EXON 20 26,691,345 26,691,452 0 0 108
GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATG
CAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG
INTRON 20 - 21 26,691,453 26,692,180 728
GTACATTTAGAAAGTAGGAGACTCA..........GTTCTTTATTGCACTTTTTGCTCAG
21 EXON 21 26,692,181 26,692,267 0 0 87
GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAAC
CACCCATATATGTTTCAGCACATTGAG
INTRON 21 - 22 26,692,268 26,696,175 3,908
GTGAGTCTGCAGCTTGTACTTCGCT..........AATTGCTTTCTTCTCTCTTTTTAAG
22 EXON 22 26,696,176 26,696,222 0 2 47
GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG
INTRON 22 - 23 26,696,223 26,698,345 2,123
GTAAATCCCCCCCCTTTTTTTCCTC..........TCTTGTTTTGCATTTTCGGGTTCAG
23 EXON 23 26,698,346 26,698,512 2 1 167
GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATT
GAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTAT
GGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG
INTRON 23 - 24 26,698,513 26,706,067 7,555
GTAAGTGCCAGAGACACCGGACTCA..........TTCTTTTTCTCTTATTCCCCCTCAG
24 EXON 24 26,706,068 26,706,231 1 0 164
GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCC
AGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGG
CAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG
INTRON 24 - 25 26,706,232 26,710,457 4,226
GTGCGTGGCTTGGCGCTGAGAGGAA..........CACAGCATCTTGTTCTCAAAACCAG
25 EXON 25 26,710,458 26,710,685 0 0 228
GATCTGCAGGCCCAAGACCGAGCTCACCGAATTGGCCAACAAAACGAGGTCCGGGTGCTG
AGGCTTTGCACCGTCAACAGTGTGGAGGAAAAGATTCTCGCGGCTGCCAAGTACAAGCTG
AACGTGGATCAGAAGGTTATCCAAGCAGGCATGTTTGACCAGAAGTCATCCAGCCACGAG
CGGAGGGCCTTCCTGCAGGCCATTCTGGAGCACGAGGAGGAGAATGAG
INTRON 25 - 26 26,710,686 26,716,114 5,429
GTAATACACAAAGCCAGACTTGGGA..........CTGATCATTCTGTTGCTGAATCCAG
26 EXON 26 26,716,115 26,716,192 0 0 78
GAAGAAGATGAGGTACCAGACGACGAGACCCTGAACCAGATGATTGCTCGCCGGGAGGAA
GAGTTTGATCTTTTTATG
INTRON 26 - 27 26,716,193 26,720,728 4,536
GTAATGTTGCAGGAATTATGGGAAA..........GTGACACTATTGTCCGTGTTTCCAG
27 EXON 27 26,720,729 26,720,947 0 0 219
CGCATGGACATGGACCGGCGGAGGGAGGATGCCCGGAACCCGAAGCGCAAACCCCGCTTG
ATGGAGGAAGATGAGCTGCCCTCCTGGATTATCAAGGATGACGCCGAAGTGGAAAGGCTC
ACCTGTGAAGAAGAGGAGGAGAAGATATTTGGGAGGGGCTCTCGCCAGCGCCGGGATGTG
GACTACAGCGATGCCCTCACCGAGAAGCAATGGCTCAGG
INTRON 27 - 28 26,720,948 26,751,823 30,876
GTAGGTGTGGCTTTTTAAACTTAAC..........TCCCTCCTTTCTTTCCTGCTTACAG
28 EXON 28 26,751,824 26,752,041 0 2 218
GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAA
AGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGA
AGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATG
AACGCCATCATTGATACTGTGATAAACTACAAAGACAG
INTRON 28 - 29 26,752,042 26,759,877 7,836
GTGAGCCCCTGGCTCCTTCCTCTCC..........TAGTGTTCTTTCTACTCTACTGCAG
29 EXON 29 26,759,878 26,759,931 2 2 54
GTGTAACGTGGAGAAGGTGCCCTGTAATTCTCAGTTGGAAATAGAAGGAAACAG
INTRON 29 - 30 26,759,932 26,771,507 11,576
GTCAGGATCTGCCTTGTATTCCCCT..........TGTTTTCACCCGAAATTCCCCTCAG
30 EXON 30 26,771,508 26,771,609 2 2 102
GAGCGAATCCGTAATCATAAGTATCGGAGCCTGGGAGACCTGGAGAAAGACGTCATGCTT
CTCTGTCACAACGCACAGACATTCAACTTGGAAGGATCCCAG
INTRON 30 - 31 26,771,610 26,774,172 2,563
GTACGTGTCAAGTTGTCGGAGACGT..........AACAGCTGACACTTTGGCCATTTAG
31 EXON 31 26,774,173 26,774,305 2 0 133
ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCC
AAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAG
TCAGAGTCAGAGG
INTRON 31 - 32 26,774,306 26,776,100 1,795
GTAAGTCCCATGCACCTGGCCCTTC..........GGGGTCTCTCTTGTGACTGCTCTAG
32 EXON 32 26,776,101 26,776,243 0 - 143
CGAAATCTGTGAAGGTGAAAATCAAGCTGAATAAAAAGGAAGAGAAAGGCCGGGACACAG
GGAAGGGCAAGAAGCGGCCAAACCGAGGCAAAGCCAAACCTGTCGTGAGCGATTTTGACA
GTGACGAGGAGCAGGAAGAGAAC
INTRON 32 - 33 26,776,244 26,777,334 1,091
GTGAGTGTACAGGCCGGGGCAGAGG..........CAGTCTGTCTACCTCTTTCTTTTAG
33 EXON 33 26,777,335 26,778,273 - - 939
GAACAGTCAGAAGCAAGTGGAACTGATAACGAGTGACCATCCTGGACGTGAGCTTCCCGC
GGTGGCAGAACCGAATGCTTTCTTCCCCCTCTCCTTCCTCCCCAGTGAGTTCACTTGCCA
TTCGGGCACACTGGGTTATTTCTCCGTCCTCATTGTCATCTAGAACTAGCTTTAGGGTAG
TGCCAGACAAACATATGATATCATGGTGTAAAAAAAGAAACACACGCGTGCAGACACACT
ACACACACACACACACACACACACACACACACACACACATATTTGTAACATATTGTGACC
AAATGGGCCTCAAAGATTCAAAGATTAAAAACAAAAAGCTTTTGATGGAAAAGATGTGGG
TGGATAGTATATTTCTACAGGTGGGTCAGGTTTGGTAGCAGTTTGATGTGCTGGGTTCCG
TCATCTGTTCTGATGAGAAGATTTTTATCTTCTGCAGTGCTGATGGCCGGGAGGAACCAT
TCAAAGCCACTGGTTATTTTGTTTTTCATCAGGCGATTTTCAAGATTTTCATTTGTTTCA
GTATTGTTGGTTTTCTCTTTTCTCTTTTTTACACTGTGGTACATATAAGCAACTTGACTA
GTGACAAATGTACAGTAGTTAGATATCACCTACATATACATTTTTCCATTTTATGCTCTA
TGATCTGAAGAACAAAAAAAAAAGCTTTTTGACTTGTATAAGATTTATGTCTACTGTAAA
CATTGCGGAATTTTTTTTTGTTCTTGTTTTATTGACAATGCTATTGAGTATTACAGTGTC
TAGAGTACCCTGGATGGCTTCTCTTGTCCACCCGATCTCCCGTGTTACCAATGTGTATGG
TCTCCTTCTCCCGAAAGTGTACTTAATCTTTGCTTTCTTTGCACAATGTCTTTGGTTGCA
AGTCATACGCCTGAGGCAAATAAAATTCCAGTAATTTCC
3' upstream sequence
AAGAATGTGGTGTTGGTACTTTCCTAATAAACCGATAACTTACCTTGACTCTGTCGCCTT
TTCTTTTATGAGTGCTAGGGCACTAAACCTCTGGGTGTGAGCAAGAGCTATCTGCAGATA
GAGAAGGGCCTTGTCATACAGATCATATTGGGGAGGGGAGAGATCATTGCTTTTCTGGCT
AAAAGAGAGGCTGCTGCCAGTCATCCTTTGCCTCCTGGCTTTAAATTTCATTCATTAGTC
AGAAAAATCTATAAAGGTAGGTAATGTGGAGACTGGCTCAGTCACTACCCATATGCCCTT
CCCACTAAGATTTAACAAAATTTTGTGCAGTGTGCCTTGTTTTAATAAGCCATGAGGATA
TAAGTCACAAGAGCAGGCACCCACAGTCCCACTGTCAAGCAGAAGGGATTAACACCCATC
CTCTAATAGTTAGTAGACCAGTCGCTAGCATATCTGCCAGTTGCCCTAAACTTGTGTTTG
GGTTTTCAATCATATGTCTTGATGTCTTTTTAAAGTCCTTAAAAAGCCAGCCCCGAGACT
GGTGCATCCTTCCCAAGGAACTGCCAGCATAGTCAAATGGAAGTTTTCCACGCCACTAAG
GAGGGTTAACATTTTCCTAAGGAGCAGGCGAGATTGCGCTAGGTGAGCTTTCCAGTGCCA
TATCAGACCACAGTCCTACGAAGCTTCATCTTCCCATCATGTCTGCTCTGACTTCCCAGC
TACTCAGAGCATTCCGGAATATTATATTTCTTTTTTGGGGGTTTGCTTATGGGATTTACT
TACTGCGGTAGGAATGGAGACTTCAGAGAGAAGCCATATTAACTTTCCACTCTGAGACCA
CTTAATATCAGTTCAAAGAAAACAGTGCCTCCCCCCTCTGCTTTCATTTCTGTATTTTCT
GTGCTGTTCTTGGCTTTGGAGGCCCTGCAGTTGGAAGGCGAGCCAAACCATTGTTTTTCT
GGTCCAAGCCTTCTCTGCCTGGTGTGTGTGCTCCCTCTTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Smarca2 (ENSMUSG00000024921)
Transcript ID ENSMUST00000099537
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1511 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information