MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Fam122a (ENSMUSG00000074922)

Cross Reference

CCDS	CCDS29712.1
EMBL	AK005219, AK011741, AK033646, ...show all
Fantom	1500011L08, 2610042G06, 5730509A11, ...show all
GO	GO:0003674, GO:0005575, GO:0008150
goslim_goa	GO:0003674, GO:0005575, GO:0008150
MGI_trans_name	Fam122a-201
protein_id	AAH28637.1, AAH83062.1, BAB23889.1, ...show all
RefSeq_mRNA	NM_026520.3
RefSeq_peptide	NP_080796
UCSC	uc008haq.1

UniParc	UPI0000026A39
Uniprot/SWISSPROT	Q9DB52

Definition

protein_id:ENSMUSP00000097152
translation:

MAQEKMELDLELPAGASPAEGGGPGGGGLRRSNSAPLIHGLSDSSPVFQAEAPSARRNST
TFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEESFSL
SDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTTRFT
TRRSQSPINCIRPSVLGPLKRKCEMETDYQPKRFFQGITNMLSSDVAQLSDPGVCVSSDT
LDGNSSSAGSSCNSPAKVSTTTDSPVSPAQAASPFIPVDELSSK

Chromosome

Length
Position(start - end)

853
24,476,502 - 24,477,356

Orient to Chromosome

minus

Link

Location : (19:24476502-24477356)
/

Detail Map

name	Pip5k1b (ENSMUSG00000024867)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Pip5k1b note : phosphatidylinositol-4-phosphate 5-kinase, type 1 beta [Source:MGI Symbol;Acc:MGI:107930]

name	Fam122a (ENSMUSG00000074922)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Fam122a note : family with sequence similarity 122, member A [Source:MGI Symbol;Acc:MGI:1915284]

name	Pip5k1b (ENSMUSG00000024867)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000025800

name	Pip5k1b (ENSMUSG00000024867)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000112673

name	Fam122a (ENSMUSG00000074922)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000099556

name	Fam122a (ENSMUSG00000074922) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS29712.1 Uniprot/SWISSPROT:Q9DB52 RefSeq_peptide:NP_080796 RefSeq_mRNA:NM_026520.3 UCSC:uc008haq.1 Fantom:1500011L08 Fantom:2610042G06 Fantom:5730509A11 Fantom:9130206K16 Fantom:F830035L22 EMBL:AK005219 EMBL:AK011741 EMBL:AK033646 EMBL:AK077654 EMBL:AK172089 EMBL:BC028637 EMBL:BC083062 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Fam122a-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 protein_id:AAH28637.1 protein_id:AAH83062.1 protein_id:BAB23889.1 protein_id:BAB27811.1 protein_id:BAC28405.1 protein_id:BAC36930.1 protein_id:BAE42820.1 UniParc:UPI0000026A39
definition	note : transcript_id=ENSMUST00000099556 protein_id : ENSMUSP00000097152 translation : MAQEKMELDLELPAGASPAEGGGPGGGGLRRSNSAPLIHGLSDSSPVFQAEAPSARRNSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEESFSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTTRFTTRRSQSPINCIRPSVLGPLKRKCEMETDYQPKRFFQGITNMLSSDVAQLSDPGVCVSSDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQAASPFIPVDELSSK

name
type	misc_feature
link
xref
definition	note : contig AC150898.2 1..113053(-1)

name	Pip5k1b (ENSMUSG00000024867)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000078828 Vega_transcript:OTTMUST00000078828 MGI_trans_name:Pip5k1b-003 OTTT:OTTMUST00000078828
definition	note : retained_intron note : transcript_id=ENSMUST00000156814

name	Pip5k1b (ENSMUSG00000024867)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000078829 Vega_transcript:OTTMUST00000078829 MGI_trans_name:Pip5k1b-004 OTTT:OTTMUST00000078829
definition	note : processed_transcript note : transcript_id=ENSMUST00000145829

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Fam122a (ENSMUSG00000074922)
Transcript ID	ENSMUST00000099556

Reports
substitution
cSNPs	0
Insertion	14
Deletion	5
SNPs	+1kb 24477683(c.-327G>A), 24477742(c.-386A>T), 24477794(c.-438G>T), 24477852(c.-496T>C), 24477896(c.-540G>A), 24478003(c.-647G>A), 24478043(c.-687A>C), 24478045(c.-689C>T), 24478065(c.-709G>A), 24478133(c.-777A>T), 24478244(c.-888T>C), 24478282(c.-926G>T), 24478677(c.-1321G>A), 24478744(c.-1388C>T), 24479190(c.-1834T>C), 24479436(c.-2080T>G), 24479439(c.-2083T>C), 24479466(c.-2110C>G), 24479467(c.-2111C>T), 24479477(c.-2121C>A), 24480167(c.-2811G>A), 24481304(c.-3948G>A), 24481371(c.-4015T>C), 24482107(c.-4751T>C), 5'UTR CDS 3'UTR INTRON -1kb 24471618(c.4884G>A), 24471672(c.4830G>A), 24471753(c.4749A>G), 24471878(c.4624G>A), 24472080(c.4422C>G), 24472152(c.4350T>C), 24472218(c.4284A>G), 24472252(c.4250G>A), 24472372(c.4130T>C), 24472420(c.4082A>G), 24472490(c.4012C>T), 24472921(c.3581A>T), 24473329(c.3173A>G), 24473531(c.2971C>A), 24473545(c.2957G>A), 24473583(c.2919G>A), 24473596(c.2906C>A), 24473613(c.2889C>T), 24473645(c.2857T>G), 24473716(c.2786A>G), 24474090(c.2412A>G), 24474117(c.2385C>G), 24474123(c.2379C>G), 24474126(c.2376G>A), 24474151(c.2351A>G), 24474306(c.2196T>C), 24474465(c.2037A>G), 24474563(c.1939C>T), 24474618(c.1884A>G), 24474981(c.1521A>G), 24475167(c.1335G>A), 24475759(c.743C>T), 24475777(c.*725C>A),
Insertions	+1kb 24477568 (c.-213dupC), 24478065 (c.-710dupC), 24478214 (c.-861_-859dupCTT), 24480837 (c.-3482dupA), 5'UTR CDS 3'UTR INTRON -1kb 24471966 (c.4535_4536insCAGT), 24471986 (c.4515_4516insTA), 24472701 (c.3800_3801insG), 24472704 (c.3797_3798insG), 24472800 (c.3701_3702insGG), 24473370 (c.3130_3131dupTG), 24473613 (c.2886_2888dupTCT), 24474336 (c.2165_2166insTTTT), 24476429 (c.72_73insAA), 24476449 (c.52_53insAAAA),
Deletions	+1kb 24481337 (c.-3982delA), 5'UTR CDS 3'UTR INTRON -1kb 24472583 (c.3915_3918delGCTG), 24475562 (c.936_939delTCTC), 24476456 (c.45delA), 24476462 (c.38_*39delCA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000099556)	MAQEKMELDLELPAGASPAEGGGPGGGGLRRSNSAPLIHGLSDSSPVFQAEAPSARRNST TFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEESFSL SDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTTRFT TRRSQSPINCIRPSVLGPLKRKCEMETDYQPKRFFQGITNMLSSDVAQLSDPGVCVSSDT LDGNSSSAGSSCNSPAKVSTTTDSPVSPAQAASPFIPVDELSSK*
MSMv4 transcript	MAQEKMELDLELPAGASPAEGGGPGGGGLRRSNSAPLIHGLSDSSPVFQAEAPSARRNST TFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEESFSL SDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTTRFT TRRSQSPINCIRPSVLGPLKRKCEMETDYQPKRFFQGITNMLSSDVAQLSDPGVCVSSDT LDGNSSSAGSSCNSPAKVSTTTDSPVSPAQAASPFIPVDELSSK*
homology	100.00 (285 / 285)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Fam122a (ENSMUSG00000074922)
Transcript ID	ENSMUST00000099556

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GTACCTGGTACATAGTAAGTAGGTATGCCCGAATAGGAGACTTGACTGAA TAAATGAACACATACAACTTCCCTTTTAATGAGATACAAAGTTTTGTATTAATTACATAA GCCAAAAATCTGTTGATCTATGAATGTGTCTTTTTTTTTTCTTTCATTGGATTCCCACAC CAAGTGAACATTAGTATGTGCACGGTTAACGGCAGAAATATGACAACTTTTTTTAAAAAG ATGTCACAAAGCTTCTTCCTCCCAACCGCCTTAAGTCTACTATTCTCTCTTGGCCCTCCC CGATTCTGTCCTAGTGTAAATTACCCTCCTCTTTGGCCTTTTCCCTGTAGGTTCTAATCC CATATCTTCTTCCTCAGACCTCAGCCAAAGGCTGCTCCTGTACCCTAATATGCTTCCTTG AGAACGCCCGGGAGTTCATTGTTCTCAAAAAAAGCCCAGAACTTGCTCTTATCCACCATC AGGCTAACAACCCTGTCCTCCTGGTTCCTGTCTGCCACCTAGCTGGGTAGCAGTGGCTCC CTGCTTCCAGTCCAGTTTTACAAAGCGCCGCCTTGGCCTCCTTCAGACTTCCCTCTGGGA AGCCCACCAGGCCGGGCCAAGCTCTATCATGAAGCCCCACATCACCAAGGGCCTATCTTT CTGAGCTCACACTTGCTTCATAAACACATACACTTCTCAATGCCCCGGCCTCCGTAACCT GCCTTCCCGCGAGCCCGCGCCCAGTGACTATTTGCGGAAGAAACGAACACTGGAGTCGCC CAACCACTGCTCGCCCCCTGCCCCCGCCGCGGCGCCGCAGCCATGACGCACTAAGCTGGC GCCGCGAGAACGGGCGTGCCAGGGCGCCTGCGCGAAGGGGCACGCCTGCGCAGAGGCGCG AACCCGCTGACAGATTCTCGAAGGCGGCGGCGGCGGCGGCGGCCTTGGGCCGCGGGGAAT GGGAGTCCCAGGGCCCTGACTGAGCACCGCCCCCGCCTCCCGGCCGCGCC
1	EXON 1	24,476,502	24,477,356	-	-	855	ATGGCTCAGGAGAAGATGGAGCTGGACCTGGAGTTGCCCGCGGGCGCGAGCCCGGCGGAG GGCGGCGGCCCTGGCGGCGGGGGCCTGCGGAGGTCTAACAGCGCCCCCCTGATCCACGGC CTCAGCGACTCGTCGCCGGTGTTCCAGGCCGAGGCGCCCAGCGCCAGACGGAACAGCACG ACGTTCCCGAGCCGCCACGGCCTGCTGCTCCCGGCCTCGCCGGTCCGAATGCACAGCAGC CGCCTGCACCAGATCAAACAGGAGGAGGGCATGGACCTGATCAACCGAGAGACCGTTCAC GAGCGCGAGGTGCAGACCGCAATGCAGATAAGCCACTCCTGGGAGGAAAGTTTCAGCCTG AGTGACAACGACGTGGAGAAATCCGCCTCCCCGAAGCGCATCGATTTCATTCCGGTGTCT CCGGCACCGTCCCCGACCCGGGGAATTGGGAAGCAGTGTTTCTCACCGTCCTTGCAAAGT TTTGTGAGTAGCAACGGACTGCCTCCAAGTCCCATTCCCAGCCCAACCACCCGATTTACC ACCCGGAGAAGCCAGAGTCCCATCAACTGCATTAGACCAAGTGTTCTTGGACCATTGAAA AGAAAATGTGAAATGGAAACTGATTATCAGCCAAAGAGATTTTTCCAGGGCATCACCAAC ATGCTGTCTTCTGACGTTGCACAGCTGTCAGACCCCGGTGTGTGCGTATCTTCCGATACC CTGGATGGAAACAGCAGCAGTGCCGGATCTTCCTGTAACTCACCAGCGAAAGTCAGCACT ACCACCGACTCTCCTGTGTCGCCCGCCCAAGCAGCCTCCCCCTTTATTCCAGTAGATGAA CTTTCCTCAAAGTGA
	3' upstream sequence						CTCACTCATCTTGAATCCCCCTCCCCCAATGGAGAGACAAAAAAACAAAAACAAACAAAA AAAAAAAGAAAGAAAAAAATCAAGTTAGAGCAAGCACTGAACTTTGTCGATTACGTTAAA GCCGTTTCCTATTTGACTCTTCCCTCTTTTTGGAAATTCCTGAAATGTTATTCTAGAGAA TTTCTATGTCAGGTTCCTGGGGATGCCCTTGAATTCAGTGTAGTAATATTTTCGGACTTT TTATCAATAAGTGTGTTGAAGCATACATTTTACGCTGCTAATATGTCTAAATACATATGT TATCCCTTGATTTTTTAAATAATTGAGAGCTCTATTTATTTATGGGATTATTAAGTTCTG ATGAAAATATAAATGTTGAATTTCAGTTTAGTAAACTGATGTTTTAAAATTCCATAGTTC ATGGCACACTAATTTTTGGTGTTTTCAATGGTTGCTATTTTACATCTACTGAAGAATTTA CCTACTTACAGCTTTAAAAAGAATGTTAGTCATATCAGTCCATTGGTTGTCTAGTTTACC CAGGAGCCCTTGGTATTTAATGTCCTAGGCAGAAAGGTGGATGGGAGGGAAAAACGACAA AAGGAGAAATAGCACTTGCAGCAAATGTTTTAAAATTCAGTATATAAAGTAAATATTTAC GGACATTTTCTAACACTTTTCATAGTAACTCTGGTAAATCACACTAATACAAGTACAGAA ATGAAAAGTTTCTTTGTGAAAATATTTTTAACCAGAAAGTGCATTCTTTTGGGTATAGTC CTAAACAAGCAGGGGGACGGTGCCTTGTAGTCTTAGCTCACATGGAGACAGGTGAAGGCA AGGCTCTTGCTGCCATCTCAGATTTAACACTTGTGAAATGTAAATGTGTGAGAAGCACCG TTGAGTGTTGGAGAATACCCAGACAGACGATACTCTCTCAATCCTTGATAGACTTGAAGC TATCCAGTCACGTCTCCATTCTTAAAATTCTTGCCAATGA..........

No.

Exon / Intron

Start

End

Start Phase

End Phase

Length

Sequence

5' upstream sequence

..........GTACCTGGTACATAGTAAGTAGGTATGCCCGAATAGGAGACTTGACTGAA
TAAATGAACACATACAACTTCCCTTTTAATGAGATACAAAGTTTTGTATTAATTACATAA
GCCAAAAATCTGTTGATCTATGAATGTGTCTTTTTTTTTTCTTTCATTGGATTCCCACAC
CAAGTGAACATTAGTATGTGCACGGTTAACGGCAGAAATATGACAACTTTTTTTAAAAAG
ATGTCACAAAGCTTCTTCCTCCCAACCGCCTTAAGTCTACTATTCTCTCTTGGCCCTCCC
CGATTCTGTCCTAGTGTAAATTACCCTCCTCTTTGGCCTTTTCCCTGTAGGTTCTAATCC
CATATCTTCTTCCTCAGACCTCAGCCAAAGGCTGCTCCTGTACCCTAATATGCTTCCTTG
AGAACGCCCGGGAGTTCATTGTTCTCAAAAAAAGCCCAGAACTTGCTCTTATCCACCATC
AGGCTAACAACCCTGTCCTCCTGGTTCCTGTCTGCCACCTAGCTGGGTAGCAGTGGCTCC
CTGCTTCCAGTCCAGTTTTACAAAGCGCCGCCTTGGCCTCCTTCAGACTTCCCTCTGGGA
AGCCCACCAGGCCGGGCCAAGCTCTATCATGAAGCCCCACATCACCAAGGGCCTATCTTT
CTGAGCTCACACTTGCTTCATAAACACATACACTTCTCAATGCCCCGGCCTCCGTAACCT
GCCTTCCCGCGAGCCCGCGCCCAGTGACTATTTGCGGAAGAAACGAACACTGGAGTCGCC
CAACCACTGCTCGCCCCCTGCCCCCGCCGCGGCGCCGCAGCCATGACGCACTAAGCTGGC
GCCGCGAGAACGGGCGTGCCAGGGCGCCTGCGCGAAGGGGCACGCCTGCGCAGAGGCGCG
AACCCGCTGACAGATTCTCGAAGGCGGCGGCGGCGGCGGCGGCCTTGGGCCGCGGGGAAT
GGGAGTCCCAGGGCCCTGACTGAGCACCGCCCCCGCCTCCCGGCCGCGCC

EXON 1

24,476,502

24,477,356

855

ATGGCTCAGGAGAAGATGGAGCTGGACCTGGAGTTGCCCGCGGGCGCGAGCCCGGCGGAG
GGCGGCGGCCCTGGCGGCGGGGGCCTGCGGAGGTCTAACAGCGCCCCCCTGATCCACGGC
CTCAGCGACTCGTCGCCGGTGTTCCAGGCCGAGGCGCCCAGCGCCAGACGGAACAGCACG
ACGTTCCCGAGCCGCCACGGCCTGCTGCTCCCGGCCTCGCCGGTCCGAATGCACAGCAGC
CGCCTGCACCAGATCAAACAGGAGGAGGGCATGGACCTGATCAACCGAGAGACCGTTCAC
GAGCGCGAGGTGCAGACCGCAATGCAGATAAGCCACTCCTGGGAGGAAAGTTTCAGCCTG
AGTGACAACGACGTGGAGAAATCCGCCTCCCCGAAGCGCATCGATTTCATTCCGGTGTCT
CCGGCACCGTCCCCGACCCGGGGAATTGGGAAGCAGTGTTTCTCACCGTCCTTGCAAAGT
TTTGTGAGTAGCAACGGACTGCCTCCAAGTCCCATTCCCAGCCCAACCACCCGATTTACC
ACCCGGAGAAGCCAGAGTCCCATCAACTGCATTAGACCAAGTGTTCTTGGACCATTGAAA
AGAAAATGTGAAATGGAAACTGATTATCAGCCAAAGAGATTTTTCCAGGGCATCACCAAC
ATGCTGTCTTCTGACGTTGCACAGCTGTCAGACCCCGGTGTGTGCGTATCTTCCGATACC
CTGGATGGAAACAGCAGCAGTGCCGGATCTTCCTGTAACTCACCAGCGAAAGTCAGCACT
ACCACCGACTCTCCTGTGTCGCCCGCCCAAGCAGCCTCCCCCTTTATTCCAGTAGATGAA
CTTTCCTCAAAGTGA

3' upstream sequence

CTCACTCATCTTGAATCCCCCTCCCCCAATGGAGAGACAAAAAAACAAAAACAAACAAAA
AAAAAAAGAAAGAAAAAAATCAAGTTAGAGCAAGCACTGAACTTTGTCGATTACGTTAAA
GCCGTTTCCTATTTGACTCTTCCCTCTTTTTGGAAATTCCTGAAATGTTATTCTAGAGAA
TTTCTATGTCAGGTTCCTGGGGATGCCCTTGAATTCAGTGTAGTAATATTTTCGGACTTT
TTATCAATAAGTGTGTTGAAGCATACATTTTACGCTGCTAATATGTCTAAATACATATGT
TATCCCTTGATTTTTTAAATAATTGAGAGCTCTATTTATTTATGGGATTATTAAGTTCTG
ATGAAAATATAAATGTTGAATTTCAGTTTAGTAAACTGATGTTTTAAAATTCCATAGTTC
ATGGCACACTAATTTTTGGTGTTTTCAATGGTTGCTATTTTACATCTACTGAAGAATTTA
CCTACTTACAGCTTTAAAAAGAATGTTAGTCATATCAGTCCATTGGTTGTCTAGTTTACC
CAGGAGCCCTTGGTATTTAATGTCCTAGGCAGAAAGGTGGATGGGAGGGAAAAACGACAA
AAGGAGAAATAGCACTTGCAGCAAATGTTTTAAAATTCAGTATATAAAGTAAATATTTAC
GGACATTTTCTAACACTTTTCATAGTAACTCTGGTAAATCACACTAATACAAGTACAGAA
ATGAAAAGTTTCTTTGTGAAAATATTTTTAACCAGAAAGTGCATTCTTTTGGGTATAGTC
CTAAACAAGCAGGGGGACGGTGCCTTGTAGTCTTAGCTCACATGGAGACAGGTGAAGGCA
AGGCTCTTGCTGCCATCTCAGATTTAACACTTGTGAAATGTAAATGTGTGAGAAGCACCG
TTGAGTGTTGGAGAATACCCAGACAGACGATACTCTCTCAATCCTTGATAGACTTGAAGC
TATCCAGTCACGTCTCCATTCTTAAAATTCTTGCCAATGA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Fam122a (ENSMUSG00000074922)
Transcript ID	ENSMUST00000099556

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 285 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information