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Target CDS Information

Gene Symbol (Gene ID) Trpm3 (ENSMUSG00000052387)
Cross Reference
CCDS CCDS29702.1
EMBL AC123066, AC124513, AC132389, ...show all
GO GO:0005227, GO:0005261, GO:0006812, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0006810, ...show all
MGI_trans_name Trpm3-206
protein_id CAD67492.1
Reactome R-MMU-2672351, R-MMU-3295583, R-MMU-382551, ...show all
RefSeq_mRNA NM_001035239.2, NM_001035242.1
RefSeq_mRNA_predicted XM_006526969.2
RefSeq_peptide NP_001030316, NP_001030319.1
RefSeq_peptide_predicted XP_006527032.1
UCSC uc008gzm.1
UniParc UPI00004CCFDA
Uniprot/SPTREMBL Q5F4T0
Definition protein_id:ENSMUSP00000097164
translation:
MGKKWRDAGELERGCSDREDSAESRRRSRSASRGRFAESWKRLSSKQGSTKRSGLPAQQT
PAQKSWIERAFYKRECVHIIPSTKDPHRCCCGRLIGQHVGLTPSISVLQNEKNESRLSRN
DIQSEKWSISKHTQLSPTDAFGTIEFQGGGHSNKAMYVRVSFDTKPDLLLHLMTKEWQLE
LPKLLISVHGGLQNFELQPKLKQVFGKGLIKAAMTTGAWIFTGGVNTGVIRHVGDALKDH
ASKSRGKICTIGIAPWGIVENQEDLIGRDVVRPYQTMSNPMSKLTVLNSMHSHFILADNG
TTGKYGAEVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVP
VVVCDGSGRASDILAFGHKYSEEGGLINESLRDQLLVTIQKTFTYTRTQAQHLFIILMEC
MKKKELITVFRMGSEGHQDIDLAILTALLKGANASAPDQLSLALAWNRVDIARSQIFIYG
QQWPVGSLEQAMLDALVLDRVDFVKLLIENGVSMHRFLTISRLEELYNTRHGPSNTLYHL
VRDVKKGNLPPDYRISLIDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFGPKRPKALKLL
GMEDDIPLRRGRKTTKKREEEVDIDLDDPEINHFPFPFHELMVWAVLMKRQKMALFFWQH
GEEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNSRDFGQLAVELLDQSYKQDEQL
AMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNSGLKVILG
ILLPPSILSLEFKNKDDMPYMTQAQEIHLQEKEPEEPEKPTKEKDEEDMELTAMLGRSNG
ESSRKKDEEEVQSRHRLIPVGRKIYEFYNAPIVKFWFYTLAYIGYLMLFNYIVLVKMERW
PSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIAILLFSVGMIL
RLQDQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDMMYFVIIMLVV
LMSFGVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDRKQVYDSHTPKSAPCG
QNETREDGKTIQLPPCKTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQV
WKFQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHVCCRWRKHESDQDERDYGLKLFITDD
ELKKVHDFEEQCIEEYFREKDDRFNSSNDERIRVTSERVENMSMRLEEVNEREHSMKASL
QTVDIRLAQLEDLIGRMATALERLTGLERAESNKIRSRTSSDCTDAAYIVRQSSFNSQEG
NTFKLQESIDPAGEETISPTSPTLMPRMRSHSFYSVNVKDKGGIEKLESIFKERSLSLHR
ATSSHSVAKEPKAPAAPANTLAIVPDSRRPSSCIDIYVSAMDELHCDIEPLDNSMNILGL
GEPSFSALAPSTTPSSSAYATLAPTDRPPSRSIDFEDLTSMDTRSFSSDYTHLPECQNPW
DTDPPTYHTIERSKSSRYLATTPFLLEEAPIVKSHSFMFSPSRSYYANFGVPVKTAEYTS
ITDCIDTRCVNAPQAIADRATFPGGLGDKVEDLSCCHPEREAELSHPSSDSEENEARGQR
AANPISSQEAENADRTLSNNITVPKIERANSYSAEEPNVPYAHTRKSFSISDKLDRQRNT
ASLRNPFQRSKSSKPEGRGDSLSMRRLSRTSAFHSFESKHN

Chromosome 19
Length
Position(start - end)
849,188
22,139,119 - 22,988,308
Orient to Chromosome plus
Link Location : (19:22139119-22988308)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Trpm3 (ENSMUSG00000052387)
Transcript ID ENSMUST00000099569
Reports
substitution
cSNPs10
Insertion613
Deletion755
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num9
non-synonymous num1
synonymous substitutions 22715275 (p.Lys243Lys), 22793388 (p.Thr404Thr), 22901189 (p.Gln651Gln), 22904727 (p.Ile807Ile), 22910058 (p.Gly840Gly), 22918728 (p.Asp964Asp), 22918797 (p.Leu987Leu), 22978434 (p.Ala1124Ala), 22986955 (p.Glu1271Glu),
non-synonymous substitutions 22982670 (p.Arg1223His),
B6 transcript
(ENSMUST00000099569)
MGKKWRDAGELERGCSDREDSAESRRRSRSASRGRFAESWKRLSSKQGSTKRSGLPAQQT
PAQKSWIERAFYKRECVHIIPSTKDPHRCCCGRLIGQHVGLTPSISVLQNEKNESRLSRN
DIQSEKWSISKHTQLSPTDAFGTIEFQGGGHSNKAMYVRVSFDTKPDLLLHLMTKEWQLE
LPKLLISVHGGLQNFELQPKLKQVFGKGLIKAAMTTGAWIFTGGVNTGVIRHVGDALKDH
ASKSRGKICTIGIAPWGIVENQEDLIGRDVVRPYQTMSNPMSKLTVLNSMHSHFILADNG
TTGKYGAEVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVP
VVVCDGSGRASDILAFGHKYSEEGGLINESLRDQLLVTIQKTFTYTRTQAQHLFIILMEC
MKKKELITVFRMGSEGHQDIDLAILTALLKGANASAPDQLSLALAWNRVDIARSQIFIYG
QQWPVGSLEQAMLDALVLDRVDFVKLLIENGVSMHRFLTISRLEELYNTRHGPSNTLYHL
VRDVKKGNLPPDYRISLIDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFGPKRPKALKLL
GMEDDIPLRRGRKTTKKREEEVDIDLDDPEINHFPFPFHELMVWAVLMKRQKMALFFWQH
GEEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNSRDFGQLAVELLDQSYKQDEQL
AMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNSGLKVILG
ILLPPSILSLEFKNKDDMPYMTQAQEIHLQEKEPEEPEKPTKEKDEEDMELTAMLGRSNG
ESSRKKDEEEVQSRHRLIPVGRKIYEFYNAPIVKFWFYTLAYIGYLMLFNYIVLVKMERW
PSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIAILLFSVGMIL
RLQDQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDMMYFVIIMLVV
LMSFGVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDRKQVYDSHTPKSAPCG
QNETREDGKTIQLPPCKTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQV
WKFQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHVCCRWRKHESDQDERDYGLKLFITDD
ELKKVHDFEEQCIEEYFREKDDRFNSSNDERIRVTSERVENMSMRLEEVNEREHSMKASL
QTVDIRLAQLEDLIGRMATALERLTGLERAESNKIRSRTSSDCTDAAYIVRQSSFNSQEG
NTFKLQESIDPAGEETISPTSPTLMPRMRSHSFYSVNVKDKGGIEKLESIFKERSLSLHR
ATSSHSVAKEPKAPAAPANTLAIVPDSRRPSSCIDIYVSAMDELHCDIEPLDNSMNILGL
GEPSFSALAPSTTPSSSAYATLAPTDRPPSRSIDFEDLTSMDTRSFSSDYTHLPECQNPW
DTDPPTYHTIERSKSSRYLATTPFLLEEAPIVKSHSFMFSPSRSYYANFGVPVKTAEYTS
ITDCIDTRCVNAPQAIADRATFPGGLGDKVEDLSCCHPEREAELSHPSSDSEENEARGQR
AANPISSQEAENADRTLSNNITVPKIERANSYSAEEPNVPYAHTRKSFSISDKLDRQRNT
ASLRNPFQRSKSSKPEGRGDSLSMRRLSRTSAFHSFESKHN*
MSMv4 transcript
MGKKWRDAGELERGCSDREDSAESRRRSRSASRGRFAESWKRLSSKQGSTKRSGLPAQQT
PAQKSWIERAFYKRECVHIIPSTKDPHRCCCGRLIGQHVGLTPSISVLQNEKNESRLSRN
DIQSEKWSISKHTQLSPTDAFGTIEFQGGGHSNKAMYVRVSFDTKPDLLLHLMTKEWQLE
LPKLLISVHGGLQNFELQPKLKQVFGKGLIKAAMTTGAWIFTGGVNTGVIRHVGDALKDH
ASKSRGKICTIGIAPWGIVENQEDLIGRDVVRPYQTMSNPMSKLTVLNSMHSHFILADNG
TTGKYGAEVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVP
VVVCDGSGRASDILAFGHKYSEEGGLINESLRDQLLVTIQKTFTYTRTQAQHLFIILMEC
MKKKELITVFRMGSEGHQDIDLAILTALLKGANASAPDQLSLALAWNRVDIARSQIFIYG
QQWPVGSLEQAMLDALVLDRVDFVKLLIENGVSMHRFLTISRLEELYNTRHGPSNTLYHL
VRDVKKGNLPPDYRISLIDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFGPKRPKALKLL
GMEDDIPLRRGRKTTKKREEEVDIDLDDPEINHFPFPFHELMVWAVLMKRQKMALFFWQH
GEEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNSRDFGQLAVELLDQSYKQDEQL
AMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNSGLKVILG
ILLPPSILSLEFKNKDDMPYMTQAQEIHLQEKEPEEPEKPTKEKDEEDMELTAMLGRSNG
ESSRKKDEEEVQSRHRLIPVGRKIYEFYNAPIVKFWFYTLAYIGYLMLFNYIVLVKMERW
PSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIAILLFSVGMIL
RLQDQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDMMYFVIIMLVV
LMSFGVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDRKQVYDSHTPKSAPCG
QNETREDGKTIQLPPCKTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQV
WKFQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHVCCRWRKHESDQDERDYGLKLFITDD
ELKKVHDFEEQCIEEYFREKDDHFNSSNDERIRVTSERVENMSMRLEEVNEREHSMKASL
QTVDIRLAQLEDLIGRMATALERLTGLERAESNKIRSRTSSDCTDAAYIVRQSSFNSQEG
NTFKLQESIDPAGEETISPTSPTLMPRMRSHSFYSVNVKDKGGIEKLESIFKERSLSLHR
ATSSHSVAKEPKAPAAPANTLAIVPDSRRPSSCIDIYVSAMDELHCDIEPLDNSMNILGL
GEPSFSALAPSTTPSSSAYATLAPTDRPPSRSIDFEDLTSMDTRSFSSDYTHLPECQNPW
DTDPPTYHTIERSKSSRYLATTPFLLEEAPIVKSHSFMFSPSRSYYANFGVPVKTAEYTS
ITDCIDTRCVNAPQAIADRATFPGGLGDKVEDLSCCHPEREAELSHPSSDSEENEARGQR
AANPISSQEAENADRTLSNNITVPKIERANSYSAEEPNVPYAHTRKSFSISDKLDRQRNT
ASLRNPFQRSKSSKPEGRGDSLSMRRLSRTSAFHSFESKHN*
homology99.94 (1722 / 1722)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Trpm3 (ENSMUSG00000052387)
Transcript ID ENSMUST00000099569
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGAGAGAGGAAAAACAAGTCCCTTGAAAGAGTACCAATCCCTTTTCTTCC
CAGAATCCTCCTCAGCGTTGCTCCTTAATACAGACCCTTGGGCTTAATTGTAGAGGGAGA
AGAGAGTCAATCAACTGGGGGATTCTCTTTTATTCCTTCTTAGTTCTAGGAAGCTGGGGA
TAAAACCTGGGTCCTTGCATATACCAGAAAGTGTTCTATCATATTGAGTTACGCCCCACT
CTCTATTACAATTTGTGGCATCCTGATTCCCAGGCATAGCCCAGCTAATTATATGAGTCC
CCGCCCCAGAATCGGAAATATCAGCATTTAACATGCTACAGTTTATAACACGCGCACACG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAAAGCTATTCAGGAAACTTCG
ATATGCAGCCAAGTCTGAGGCCCAGTGGGCTAGCCTGACAAGCAGAGGGAAGAATTAGCC
CAGTACCTGACATGCAGATGAAGCTGGACTCTCCCAAAGGACACTTGAATACAGTTATTG
CAAAGAGATGAAAAGGAAGAAAGAGAAAGGAAGGCAGATAAAGTTTCAGGCTTACTCTCT
TTGTCTAAGTCAACTGGAGTCTCCACCCACTCACCAGTGGGTGACCCAGGCTTCTGCTCC
CAGGTCCCCAGGGCCTGAAGACTGGGTGGGGCACATTGACTGCAAGAAACTCCTAGAGCA
GTGGCTCCACAACCCCAGGCGTGGGCCGTGAACCCCCTGCCTCCCCCTCCCGCGCCTTGA
AGGCGGTGGCTGCCGGTGGAAAGCAATTTGGGGTGCATAAGGAAGCGGGCTGGAGCGCAG
GTGGCGCTCGCAGCCCCAGCCCCTGTTGAGCCAATCGCGAGCGCAAGCGCAGCCTGCTGG
CAGCTTTACGGAGCTCCCGACTCAGGCGGGGAGCCTACTAGGCGAAGGCGGCGCAGGAGA
GAGCTGAGCGCAGGCTGCTCTGAGCACTGCCAAGGGCCAGGCTGCTAAGA
1 EXON 1 22,139,119 22,139,301 - 0 183
ATGGGCAAGAAGTGGAGGGATGCGGGCGAGCTGGAGAGAGGTTGCTCTGACCGCGAGGAC
AGCGCAGAGAGCCGCAGGCGCAGCCGCAGCGCCAGCCGGGGCAGGTTTGCCGAGTCGTGG
AAAAGGTTAAGTTCCAAGCAGGGGTCCACCAAGCGCTCGGGACTGCCGGCACAGCAGACA
CCG
INTRON 1 - 2 22,139,302 22,697,421 558,120
GTGAGTTGGGGAGAGTCAGGGCCTC..........TTCTCTCTCTCTCATTTTGTTTCAG
2 EXON 2 22,697,422 22,697,501 0 2 80
GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCG
AGCACCAAAGACCCCCATAG
INTRON 2 - 3 22,697,502 22,698,728 1,227
GTAACCCTATTGTCTCTAATGTATT..........CTCACTTTAACCTCTCCTGTTATAG
3 EXON 3 22,698,729 22,698,933 2 0 205
GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCT
TCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTC
TATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGG
AGGTGGCCATTCCAACAAAGCTATG
INTRON 3 - 4 22,698,934 22,711,711 12,778
GTAATTTGAAAGACAGTTACTCATT..........CCCTAATTGTCAATCTCTATTCTAG
4 EXON 4 22,711,712 22,711,925 0 1 214
TATGTCCGAGTATCTTTTGATACGAAACCTGATCTCTTGCTACACCTGATGACCAAGGAA
TGGCAACTGGAGCTTCCCAAACTTCTCATCTCCGTGCACGGAGGGCTGCAGAACTTTGAA
CTCCAGCCCAAACTCAAGCAAGTCTTCGGGAAGGGGCTCATCAAAGCAGCCATGACAACT
GGAGCCTGGATCTTCACTGGAGGGGTCAACACAG
INTRON 4 - 5 22,711,926 22,715,228 3,303
GTAATCAGAGTAGGATGGAGAAAGG..........CCCCCTTCTCTTTTTCGGCTCTTAG
5 EXON 5 22,715,229 22,715,353 1 0 125
GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAATCTCGAGGGAAGA
TATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAA
GAGAT
INTRON 5 - 6 22,715,354 22,732,999 17,646
GTGAGTCCTGGGGAGTGCTCGATTG..........TCTGCCTTCCTTTTGCTGCCTGTAG
6 EXON 6 22,733,000 22,733,171 0 1 172
GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGC
ATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTG
AAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA
INTRON 6 - 7 22,733,172 22,766,633 33,462
GTAAGTTGAGCCACACTGTGACTAC..........TTTTCTTTTCCTTTTTTTAATGCAG
7 EXON 7 22,766,634 22,766,808 1 2 175
GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCT
CAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGA
GTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG
INTRON 7 - 8 22,766,809 22,793,330 26,522
GTGAGTAAATTGCCGGGTCCCGTGG..........TCACTGACCTTGGTTTTCATTGCAG
8 EXON 8 22,793,331 22,793,454 2 0 124
ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACATA
CACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGA
ACTG
INTRON 8 - 9 22,793,455 22,856,677 63,223
GTATGTCAACCCCCATGAAAATGGG..........AATTGTCTCCTTTCTCAAATTGCAG
9 EXON 9 22,856,678 22,856,750 0 1 73
ATCACAGTGTTTCGAATGGGGTCAGAAGGCCACCAGGACATTGATTTAGCTATCCTGACA
GCATTACTCAAAG
INTRON 9 - 10 22,856,751 22,883,883 27,133
GTAAGAATCTCTCTGTCTACATAAT..........TGTTTTTCCGTCCCACTTTATACAG
10 EXON 10 22,883,884 22,883,984 1 0 101
GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACA
TCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG
INTRON 10 - 11 22,883,985 22,885,347 1,363
GTAGAGTATACGTCGTAGTCGTTAC..........GCTAAGTGAATATCTTGAATTGCAG
11 EXON 11 22,885,348 22,885,482 0 0 135
GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTG
AAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAG
GAACTGTACAATACG
INTRON 11 - 12 22,885,483 22,889,393 3,911
GTAGGGCCAAGCTAAGATGCCTTTT..........TTTGATTGTTCTTTATCGTTTTCAG
12 EXON 12 22,889,394 22,889,444 0 0 51
AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG
INTRON 12 - 13 22,889,445 22,897,669 8,225
GTAAGAATCCTCTAGACCACAGGTC..........CTGTTGCTCCCTTCCTCCCTCACAG
13 EXON 13 22,897,670 22,897,810 0 0 141
GGAAACCTGCCCCCGGACTACAGAATCAGCCTGATAGACATTGGCCTGGTGATCGAGTAC
CTGATGGGCGGGGCTTACCGCTGCAACTACACGCGCAAGCGCTTTCGGACCCTCTACCAC
AATCTCTTTGGCCCCAAAAGG
INTRON 13 - 14 22,897,811 22,900,133 2,323
GTGAGCTTCTCGCTTGTTCTTAGGC..........TTGTTCACAACATTTTTTTAAACAG
14 EXON 14 22,900,134 22,900,163 0 0 30
CCCAAAGCCTTGAAACTGCTGGGAATGGAG
INTRON 14 - 15 22,900,164 22,901,045 882
GTTAGTGTTTGCTCAAATTATTAGC..........TGTATGTGTCTCTCTACGACTGCAG
15 EXON 15 22,901,046 22,901,335 0 2 290
GATGATATTCCCTTGAGGAGAGGACGGAAGACAACTAAGAAGCGTGAGGAAGAGGTGGAC
ATCGACTTGGATGATCCTGAGATCAACCACTTTCCATTCCCCTTCCATGAGCTGATGGTG
TGGGCCGTCCTCATGAAGAGACAGAAGATGGCCCTGTTCTTCTGGCAACACGGAGAGGAG
GCCATGGCCAAAGCCCTGGTGGCCTGCAAGCTCTGCAAGGCCATGGCTCACGAGGCTTCT
GAGAATGACATGGTCGATGACATTTCCCAGGAGCTGAACCACAACTCCAG
INTRON 15 - 16 22,901,336 22,901,987 652
GTTGGCCAGCCAGCACATGAGGAGG..........GTGCCTCTTGAACATTGTCTTGCAG
16 EXON 16 22,901,988 22,902,216 2 0 229
GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCT
GGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCT
GGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTAC
TGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG
INTRON 16 - 17 22,902,217 22,904,634 2,418
GTCAGCATACCCAAAAAGGATCCGT..........ATTATTATCATTATTATTACTTTAG
17 EXON 17 22,904,635 22,904,802 0 0 168
GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGAT
GACATGCCCTATATGACTCAGGCCCAGGAGATCCATCTCCAAGAGAAGGAGCCGGAGGAG
CCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA
INTRON 17 - 18 22,904,803 22,910,034 5,232
GTAAGGAAACATTTATGCAGTTTTC..........TGGTCTCTGTTCTCTCCCACTATAG
18 EXON 18 22,910,035 22,910,175 0 0 141
GCAATGTTGGGGCGAAGCAATGGAGAATCATCCAGAAAGAAAGATGAAGAAGAAGTTCAA
AGCAGGCACCGGCTAATCCCCGTGGGCCGAAAAATCTATGAGTTCTACAACGCACCCATC
GTGAAGTTCTGGTTCTACACT
INTRON 18 - 19 22,910,176 22,914,430 4,255
GTAAGCACTTTTCCTTCTCCCTTTC..........CTTACTGTATTGTATTTCCTTACAG
19 EXON 19 22,914,431 22,914,559 0 0 129
CTGGCGTATATTGGATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGC
TGGCCTTCCACTCAGGAATGGATTGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAG
ATGAGAGAG
INTRON 19 - 20 22,914,560 22,918,602 4,043
GTAACAAAATGAAATAATAAATAAA..........CTAAGCCCTCTTTGCTGCCTCATAG
20 EXON 20 22,918,603 22,918,854 0 0 252
ATCCTGATGTCGGAGCCGGGCAAGCTGCTGCAGAAGGTGAAGGTGTGGCTTCAGGAGTAC
TGGAACGTCACAGACCTCATCGCCATCCTTCTCTTCTCGGTGGGAATGATCCTTCGTCTT
CAAGACCAGCCCTTCAGGAGTGACGGGAGGGTCATCTACTGTGTGAACATCATTTATTGG
TATATCCGTTTGCTAGACATCTTCGGCGTGAACAAGTATCTGGGCCCATATGTGATGATG
ATTGGGAAAATG
INTRON 20 - 21 22,918,855 22,925,895 7,041
GTAAGCAAGGTCAACTGGTTCCGTG..........TGTTTCTCCTTTCCTGCCCTTCCAG
21 EXON 21 22,925,896 22,926,106 0 1 211
ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCTTTGGGGTC
GCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATC
TTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAG
CAAGTTTATGATTCTCATACACCAAAGTCAG
INTRON 21 - 22 22,926,107 22,978,291 52,185
GTATTTTAACTTCAATTGAGTCACG..........TTTTTACCTGTGTCACTTCCTCTAG
22 EXON 22 22,978,292 22,978,442 1 2 151
CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCA
AGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCC
TTCTGGTCAACCTCCTTATTGCTGTCTTCAA
INTRON 22 - 23 22,978,443 22,978,555 113
GTGAGTGGCCACTCCTTAAGGCGTA..........CATGTGACTCTCCGGTCTGTTTCAG
23 EXON 23 22,978,556 22,978,755 2 1 200
CAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCA
GCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCA
CATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGA
CGAAAGGGACTACGGCCTGA
INTRON 23 - 24 22,978,756 22,982,582 3,827
GTGAGCTGCAAGCCGGCGCCTGCAG..........CCCCACTCCCCCTCCACTCCCACAG
24 EXON 24 22,982,583 22,982,715 1 2 133
AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAG
AGGAATATTTCCGAGAGAAGGATGATCACTTCAATTCGTCCAACGATGAGAGGATACGTG
TTACATCAGAAAG
INTRON 24 - 25 22,982,716 22,986,855 4,140
GTGTGTTCCTCCACACAGGTGCTTC..........CTCTTACTCTTTGCTTCTCATACAG
25 EXON 25 22,986,856 22,989,882 2 - 3,027
GGTGGAGAACATGTCCATGAGGCTGGAGGAAGTTAATGAGAGAGAACATTCCATGAAGGC
TTCACTCCAGACCGTGGACATCCGGCTAGCACAGCTAGAAGACCTCATCGGGCGCATGGC
CACCGCCCTGGAGCGCCTGACTGGTCTGGAGCGGGCAGAGTCTAACAAAATCCGCTCAAG
GACCTCCTCAGACTGCACAGATGCAGCCTACATCGTCCGCCAGAGCAGCTTCAACAGCCA
GGAAGGGAACACCTTCAAACTTCAAGAGAGTATAGACCCTGCAGGTGAGGAGACCATATC
CCCAACTTCTCCAACCTTAATGCCCCGTATGCGAAGCCATTCTTTCTATTCAGTCAATGT
GAAAGACAAAGGTGGGATAGAAAAGTTGGAAAGCATTTTCAAAGAAAGGTCCCTGAGCTT
ACACCGAGCTACTAGCTCCCACTCAGTAGCCAAAGAACCCAAAGCTCCTGCAGCCCCTGC
AAACACCTTGGCCATTGTTCCTGACTCCAGAAGACCATCATCTTGCATAGACATCTATGT
CTCTGCCATGGACGAGCTCCACTGTGATATAGAGCCTCTGGATAATTCCATGAACATCCT
TGGGCTGGGTGAGCCAAGCTTTTCAGCTCTAGCACCTTCCACAACCCCGTCAAGTAGTGC
CTATGCAACGCTCGCACCTACAGACCGACCTCCCAGTAGGAGCATTGATTTTGAAGACCT
CACCTCCATGGACACTAGATCTTTTTCTTCAGACTATACACACCTCCCAGAATGCCAAAA
CCCCTGGGACACAGACCCTCCAACGTACCATACCATCGAGCGTTCCAAGAGTAGCCGCTA
CCTAGCCACCACGCCCTTTCTTCTGGAAGAGGCTCCCATTGTAAAATCCCATAGCTTTAT
GTTTTCTCCTTCAAGGAGCTACTACGCCAACTTTGGGGTGCCCGTGAAAACGGCAGAATA
CACAAGTATTACAGACTGTATCGACACAAGATGTGTCAATGCCCCCCAAGCAATAGCTGA
CCGAGCCACCTTCCCTGGAGGTCTCGGAGACAAAGTGGAAGATTTATCTTGTTGCCACCC
TGAGCGAGAAGCAGAGCTGAGCCATCCTAGCTCTGACAGTGAGGAAAATGAGGCCAGAGG
CCAGAGAGCTGCCAATCCGATATCCTCTCAGGAGGCTGAAAATGCAGACAGAACCCTATC
CAACAACATCACAGTTCCCAAGATAGAGCGCGCCAACAGCTACTCAGCAGAGGAGCCAAA
CGTGCCATATGCACATACCAGAAAGAGCTTCTCCATCAGTGACAAGCTTGATAGACAGAG
GAACACGGCGAGCCTCCGAAATCCCTTCCAGAGAAGTAAGTCCTCCAAGCCGGAGGGCCG
AGGGGACAGCCTATCCATGAGGAGACTGTCTAGAACATCGGCCTTTCATAGCTTTGAAAG
CAAGCACAACTAAACCGGCTTACCGTGTGTTGCAGGAGGCTCGAGAATCCAGCGCTAAAA
TTCTCCCCAATGCCCACCACCACGTTCCCCCTTCCTTGAGTTAGACCTGCTTTATTCTTA
GCTGAGCAAAACAATGGGAGACATTAACTCAAAGGTAACCTCTGGGCCACAGGTCAAGCA
AGCATTCCATCTGGTCCAGTGCAAAACACAGGGGTCAAAGCATGTTCCTATCTGTTGGGC
AGGGAGGGGTAAAGACAACAGGCAGGGGCTAGAGATGAATGGGTGTCACCAGGCACCAGA
GAAAGTCATGAGCTCTGGGAGCCAATGGGCTTCAGCACTCTCCATGCCAACAGGCATCAT
GGGATTTCGGCCCTGTTATCAAGAGTCGAGGGCTAAATTGCAAAATGAAATAAGAGTAGG
CAGCGTACAAGATGAGATATTCTAAACTTCCATTCTGTTTTCTTTTCACATTGGTTCCAT
CACTGGTGACTGATGAAGAACATCCTTTTTATTCAGTATAAGCCGGCAGCAAGCAGTTCT
ACCTAACGTCCCACATCCTTCTCATGCCAACACCTCTGTAATTGGTCATTATAAAGAAAA
CCAAGGTAACAGTCATATATACAGTTCACCTGTCTCTTATCTATTCACCTCTGGTGCCAC
AACTGTTTATCTCTTTAGAAGAAAATAAGGGAACAGAAAAAAAATGCCTTTTTTTTTGTC
TTGCGATCAAAATGAAAGAAGAATTGATGTTGAAAGCAAAAGTCATATGATTTATAATAT
ACCACGGGCAATCAAATATAGTCAAGGAAGCTCAGGATGAATGTACTCAGATACTTTTAT
ATTTGTAAGTTATTTTGTATCTCACCTGTCATCAAAGAATTCACTCGTCAAATGTGTAAT
ATTGAACTTTAAGGAAAAGGTGGGAAGATCTAACATTAAGTTGCCAGTGGGATGTTGTCA
CAGTCTCACCGTTCATAGTGTGTGACGCTGCTGTGTGGGCCTTCATCATCTGCATGTCTC
CACTATGTCCTCCAGACACCTCCAAGATGTAACTGCCAAATTTCCATACCGCTCATCACG
TGACCATTTTGTATTTGAACACATGGTTATATGTGGATATTTTCATACCTAGAGTTTTAG
CCATCTAATCTGGGCTCAGCATAAATTTAATCAGAGTTTTTCAAGGGCTGGTATCTTTTT
TATGGAAATGTTCCAAAGTACTTTTTAAGGAAGTTTAAAAACCATAAATAACCTTAGATT
TGAGTAGGGGCTTGATAGCAACCCAAACCCATCAGTTGCAGGTAGGCCATGAATATGTTT
CTTATTTACAAAGCTATAAAAAAGATACAGTAGGGCTAAAATAGAAAGCAATTTTACCAT
ATACAGAATTCTATAGTTTATGCTGCTTACATATACATCCACATACAGACTCATGTTTAT
ATACAGTATGTATACAGACAGAGATTTCTTAAAAGGCTTTGACTTTCTGTCATCTGACGG
TATAACTAAGATTATTTTTTAGTGTCCAAGAAGTTTCTCTGGAAAAAGTTTATTGTGCTA
TTGGACCCACTGTTGAAATTATAATTT
3' upstream sequence
TCAAAAGAAAAAATATCTCTGGTCTTCTTCACCTGTCTTTTCACTGAACAAGAACTGTCC
AAATGGTCTCCTCCCTCCCCCTCCCCCCCTCCCTCCCCCTCCCCCCCCCCCCCCAATCTC
CTTCTATTTGGAAGCATCCATTGTCATGAAATCCCTTTTACTCTGGTTGTTCTGACACAA
AGCTATTACCACCAAATACACTCTGAATAGATGAGTGCTTCTAAGCCAGTTTGTATTACA
CCATCTAGGATGGAGGCATATGTTTCTAGAATAGAACCTGGACTTGAAGTGGGATAAAGA
AATCTTGACCACAAATCTTTGGATTCCTATTTAGATCACTGAACACAGAGTCTTTAAGAA
AAAAAATGATTTGGGGCCAGGAATAGTGGTAATGTTCACTGTGTGTGATTCTGGGCACTT
GGGAAGAAGAGGAAGAAGATGAGGAATTGAGAGTCAATCTCTGCTATGTAGCAAGTTCAA
GGCCAACCTGGACTATATGAGACCCTGTTGCAGAGAGAAGGGGAGAGAGAGAGAAAAAAG
ACAGAGAGAGAAAGAGAGACAGAGACAGAGAGAGACAGAGAGGGAGGGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAACATAATTTAATGTTCCTGGTCCCAGGTGTTCC
TTATTTTGTTTTTTTCATTGCAGTTCTAAACAGCAAGGTGGATATCCCTTAGTGAAATCA
AGTCAGTACCCCACAAAACCTGTAGCCTTTAAATGTTTTTTTTTTTTTAAGAAAAAAATC
TTTTCAGCAGAAGAGTGGCAAGCATGTATCCATAAGGAATCCTTTTTCATCCTTGGTATT
TAGGCAACACCCAAGCTCTTCACTGATAACTGCGCTAGAGACACTTACTTCCTAACTGGT
GATCTCCCTCCCAGCAGACATGCTCTGAACCTGGAAATAAATCATTTGTCTCTAAGCTTC
CTAGAGCCATGAGTCCCTGTAAGAACCCGATAGAAACGCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Trpm3 (ENSMUSG00000052387)
Transcript ID ENSMUST00000099569
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1722 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information