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Target CDS Information

Gene Symbol (Gene ID) Fars2 (ENSMUSG00000021420)
Cross Reference
CCDS CCDS26454.1
EMBL AC124562, AC140397, AC153151, ...show all
GO GO:0000049, GO:0000287, GO:0004826, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Fars2-202
protein_id EDL40913.1
RefSeq_mRNA NM_001039189.2
RefSeq_mRNA_predicted XM_006516772
RefSeq_peptide NP_001034278
RefSeq_peptide_predicted XP_006516835.1
UCSC uc007qcl.2
UniParc UPI000052CBCB
Uniprot/SPTREMBL G3X9Q4
Definition protein_id:ENSMUSP00000097177
translation:
MEAVKLVEFDLKQVLTRLVTHLFGDGLEVRWVDCYFPFTHPSFEMEINFRGEWLEVLGCG
VMEQQLVNSAGAQDRIGWAFGLGLERLAMVLYDIPDIRLFWSEDERFLKQFLLSDINQSV
KFQPLSKYPAVFNDISFWLPSENYTENDFYDIVRTVGGDLVEKVDLIDKFEHPKTHRTSH
CYRITYRHMERTLSQREVGNVHQAVQEAAVQLLGVEGRF

Chromosome 13
Length
Position(start - end)
305,232
36,232,206 - 36,537,439
Orient to Chromosome plus
Link Location : (13:36232206-36537439)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fars2 (ENSMUSG00000021420)
Transcript ID ENSMUST00000099582
Reports
substitution
cSNPs0
Insertion234
Deletion298
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000099582)
MEAVKLVEFDLKQVLTRLVTHLFGDGLEVRWVDCYFPFTHPSFEMEINFRGEWLEVLGCG
VMEQQLVNSAGAQDRIGWAFGLGLERLAMVLYDIPDIRLFWSEDERFLKQFLLSDINQSV
KFQPLSKYPAVFNDISFWLPSENYTENDFYDIVRTVGGDLVEKVDLIDKFEHPKTHRTSH
CYRITYRHMERTLSQREVGNVHQAVQEAAVQLLGVEGRF*
MSMv4 transcript
MEAVKLVEFDLKQVLTRLVTHLFGDGLEVRWVDCYFPFTHPSFEMEINFRGEWLEVLGCG
VMEQQLVNSAGAQDRIGWAFGLGLERLAMVLYDIPDIRLFWSEDERFLKQFLLSDINQSV
KFQPLSKYPAVFNDISFWLPSENYTENDFYDIVRTVGGDLVEKVDLIDKFEHPKTHRTSH
CYRITYRHMERTLSQREVGNVHQAVQEAAVQLLGVEGRF*
homology100.00 (220 / 220)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fars2 (ENSMUSG00000021420)
Transcript ID ENSMUST00000099582
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTATAACTTAAAATAAATTTAAGTTTTAAATGTTTTTGAAGAATTGATGC
TCCTGTCCTCTTGTTATAGGTCCTAGACTCTAGGATCTAGCAGTAAGATTTCAGTTCGGC
GAGGCAGGATAAACTAAGAATTCAGTTTTTAAAGGCTTAGCAACTCATTTTACCTTTAAC
ATGAATATGTAGCCCCTCTCCACCATCCTTTAGTAAGAACGTATCTGATACTTGGAACCA
ACGTCACGAATTAAAACACTAGTGAAATGAAAGGGGGCCCTAGAGCAAGCCTTCAGTTTT
GTGTCCACGTGGTCTGGACTGCCTGCTTCCACTCTTGTAATCTCAAGGCAAGATATAGGT
ATGCCCTAAGTTTCCTTGTCCTAGCTTCTCACTGGTAGCTTCGCGTTCATCACTTTGTAC
CGCAGAAACAGGACACTGTTTAATGGTCCTAAAGCCCCTACGTGGGTGTCAGTTCAGGGA
AGGTATCCCAGCATTTGAAGGGCAAGTCCTTGGCTCCTCCCCTCCAGGGCTCTGAGGGTC
ACACCTGGGGGTGGACAGTAGCACGTGCGCGTCATGGGAGTGGAGCCTGTCACTTTCACA
GGTTGTGGCCGCCTGATCCGCGACCCCCGCAGACAGAGCTGGGCACCCGATTCCCGGCCC
TCCCCCCGGGTCACCTGTAATTGTAGGCGCTGAAATGCTTGCTCTCTCTCATCATCGCCC
GGTACAGATCTAAAACTTGTGCGCGGCTGGAGGCTGCCATGTTGGAAATAAACAAAAACA
AACAAACCAAAAAACACCCTAACAACAAAACCAAACAGGTCCTTCTTCGTAGAAGCCCCA
AGTTTAACTGAACCCAAATGTCAAACGATGCAAAAAAAAAAAAAAAAAAAAAAAAGCACG
CTGGAAGGCAGGAGAAGAGAGGCTCCGCCTGGCTCGCGCGCGGCCTGGCTCGCGTCCCGC
GCGAGAGGTGGCGCCGCAGGCAGGGCGGCGGGCAGCTAAGGGGTGGCGCC
1 EXON 1 36,117,411 36,118,005 - - 595
CGTGTCCTGGAGGCTCCGCGTTCCTCACAGGCTCCTCGGGCGGCAGGAGGCCGAGCCGTC
CAGCCCCAGGCTCGCTCCTCGGGAGGACAGTCGCGGGCTCGAACACCAGGGTTCAAAGCC
TCCTCCGCCTTTCGAACCGCCCGGGGGCGTGGCCGAGATCCCGGTGTCTCCTGACACCAC
GCCCCCTACACCTGCCTAGGCCCCGTTGCCTGGGTTACGAGCCGCGCTCCCCAGCCCCGC
CCCTGCCCGGCTCGGCTGTCTTTGGCGCTGCCTGACCTGCTGTGCACGAAAACGAGGGTG
ACTTTGCTTTGGATCCGTCTGGTTGGCAGCCTGAGTTTATCAGTGTCATCGTGACTGGGG
GACGCAGCGCCAGTGGTGCGGAGGTAACTAGCTGGCGACTTCCTGGCGCACCGGCTTGTC
TTTGGGCGAGCGGCTCAAGGGACCTAGGGCCCTGGCCTCTTCCCGTCAAGATGGCGGCGC
CCAGCGCGCCCAGCGTCTCGGTAGCCAGAGGTTAAGCTCAGTGACGGCGGAGTGAGTGTG
TGGCCGCTTTGCGGACTTCGAAACGCCCGCGTTTGGTTTCCCCGGCGTACGCTGG
INTRON 1 - 2 36,118,006 36,232,121 114,116
GTGAGTGCTGGCCTTGCTGCAGAGT..........CATTATTCCTTTTGGTTGTTTCCAG
2 EXON 2 36,232,122 36,232,281 - 1 160
TTATTTGCTGGCGTAAAGGATGGAGAAAGCTTGCAGCTCTTTGAAGAAGGTTCTCGCTCT
GCTCATAAGCAGGAGACACACACCATGGAGGCTGTGAAGCTTGTGGAGTTCGACCTTAAA
CAAGTACTGACTAGGCTTGTGACACATCTTTTTGGAGATG
INTRON 2 - 3 36,232,282 36,246,362 14,081
GTAGGTACTTAGAAATCTTTGTGTT..........GTATGCCTTTCCTTGTCCTCTGCAG
3 EXON 3 36,246,363 36,246,494 1 1 132
GGCTGGAGGTTCGGTGGGTGGATTGCTACTTCCCCTTCACCCACCCTTCCTTCGAGATGG
AGATCAACTTCCGTGGAGAATGGCTTGAAGTCCTTGGCTGCGGTGTGATGGAGCAGCAGC
TTGTCAATTCAG
INTRON 3 - 4 36,246,495 36,341,936 95,442
GTAAGAAAGAATTCCACTCTGCACT..........CATTTTTCTTTGTTTCTGATCATAG
4 EXON 4 36,341,937 36,342,097 1 0 161
CTGGTGCTCAGGATCGAATCGGCTGGGCGTTTGGCCTGGGATTAGAAAGATTGGCGATGG
TCCTCTACGACATTCCTGACATCCGCCTTTTCTGGAGTGAGGATGAGCGCTTCCTGAAGC
AGTTCCTCCTGTCGGACATCAACCAGAGTGTCAAGTTTCAG
INTRON 4 - 5 36,342,098 36,410,078 67,981
GTAGGATGACTTATAAGAATTAGGA..........ATGTCTCTTTCTCCCATTTTGTCAG
5 EXON 5 36,410,079 36,410,230 0 2 152
CCTCTTAGCAAGTACCCCGCCGTGTTCAATGACATTTCATTCTGGCTGCCCTCTGAGAAC
TACACGGAGAATGATTTCTATGACATCGTCCGAACAGTCGGAGGAGACCTGGTAGAAAAG
GTTGATCTTATAGACAAGTTTGAACATCCAAA
INTRON 5 - 6 36,410,231 36,537,300 127,070
GTAAGTGAAAAACTTTCCGATTTTA..........CTTGCATTTCCTCCTTCCTCAACAG
6 EXON 6 36,537,301 36,537,592 2 - 292
GACACACAGGACCAGCCACTGCTACCGCATTACCTACCGCCACATGGAACGGACACTGTC
CCAGAGAGAAGTCGGCAATGTCCACCAGGCTGTGCAGGAGGCCGCCGTGCAGCTGCTGGG
TGTGGAGGGCCGTTTCTGATGCGGTGGCAGTCTACAGGCCACAGCCCTCATAGAGCTCCA
GGGAGCACCAGGAAGGGGGAAACACATTGTTTGTGAACTGGAGTGTCTGCCCTCACTTGA
CAGATGGGTCTGCTTTAGGACGTCACGAAATAAAGGATCACTTTTCAGAAGC
3' upstream sequence
ATTGACATAGCATTTGTCTTTTATTTGGGGGAAGGAGAAAGCAGACACTGATATAAGAGT
TCCCTGCTATTCGTTTAGAAAGGCTTGGCCCATTGGCTCTCCTTGTGGTTAATTGGTCCC
TGGGTTCCATTAAGCACCAGGCATGATTCTTGCCTGACAGGCTCTTCCACCCATGTAATG
AGTGAAGCCACAGAGAAGGGTCTCAGAAACTGGATATAGTGCAGGCATGCCTAGTGTGTG
TATATTTTGCTTGGCTATAGGTCACAGATCTTGCATTTTGACAAATTGGAGGTTCGTGGC
AACCTGTGTTGAGCAAGTCTGTTGTCCCCACTTTCTTTCAGCTTGAATGATCATTATTAT
TTCTTAGCAGTGCTTTTCAATTAGGGTAAATCTATGGTTTTCTTTCTTTTCTTTTTTTTT
TTTTTTTTAATACCATAAAGCTGTTGGATACATCGCAGAGGGCAGTAGCCTATGAGCCTA
ACTTCCATGTGCACTGGGAAACCAAAAGATGCCTATAACTTCCTTCATGATGAATTCACT
TTATCACAGTAGTCTGGAACCCCATCATCATCCTCAGCCCGAGCCTGTCCGGGAAGCCTT
TGAGTCTCTGCCATCCTTTCTCCCTTCTCTTCTTTGTTTTGCAAAGGGCAGGCTTCAAAG
AGGCTGCTGATGAAATGCCAGGGCTTCCCTTGAAAGTAGAAGTCACAGCTCTAAGCCAGG
CAAGGTAGATATTTGCTTTCATAAACCCAAGGCCAGGGGCCAGCCCCTTGGCCCTAGGCT
TGGACCTTCCTGCCCACTGCCCTAGGAGAGGAAGGAAAAGGAGCAAGAGCTGCCCTGAGT
GCAGGAGGCACACTGAGGGCTAGGCCTGCCAACTCCCCAGGTTGTCCCCTGCAGGAGGCC
TCCACTTCCAGAATGAAGGCGACCTTTAAGGGAGAGCACAGGGCTTTGATGTCTCCCCCC
TTTCCATCCTGGGCACTTTGTAGTCAGCCTGCTTCACTCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Fars2 (ENSMUSG00000021420)
Transcript ID ENSMUST00000099582
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 220 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information