top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Pde4dip (ENSMUSG00000038170)
Cross Reference
EMBL AC130541, AC131746, AC153661, ...show all
Fantom D130062J22
GO GO:0005515, GO:0005634, GO:0005737, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Pde4dip-004
OTTP OTTMUSP00000058450
OTTT OTTMUST00000104438
protein_id BAE24885.1
UCSC uc008qph.2
UniParc UPI00005AC0DA
Uniprot/SPTREMBL Q3UR03
Vega_transcript OTTMUST00000104438, Pde4dip-004
Vega_translation 188250, OTTMUSP00000058450
Definition protein_id:ENSMUSP00000102653
translation:
MEQTWARHYFGEDDGEMVPRTSSAAAFLSDTKDRGPPVQSQTWRSAERVPFGQAHSLRAF
EKPPLVQTQALRDFEKHLNDLKKENFSLKLRIYFLEERMQQKYEVSREDVYKRNIELKVE
VESLKRELQDRKQHLDKTWADAEDLNSQNEAELRRQVEERQQETEHVYELLGNKIQLLQE
EPRLAKNEATEMETLVEAEKRCNLELSERWTNAAKNREDAAGDQEKPDQYSEALAQRDRR
IEELRQSLAAQEGLVEQLSQEKRQLLHLLEEPASMEVQPVPKGLPTQQKPDLHETPTTQP
PVSESHLAELQDKIQQTEATNKILQEKLNDLSCELKSAQESSQKQDTTIQSLKEMLKSRE
SETEELYQVIEGQNDTMAKLREMLHQSQLGQLHSSEGIAPAQQQVALLDLQSALFCSQLE
IQRLQRLVRQKERQLADGKRCVQLVEAAAQEREHQKEAAWKHNQELRKALQHLQGELHSK
SQQLHVLEAEKYNEIRTQGQNIQHLSHSLSHKEQLIQELQELLQYRDNADKTLDTNEVFL
EKLRQRIQDRAVALERVIDEKFSALEEKDKELRQLRLAVRDRDHDLERLRCVLSANEATM
QSMESLLRARGLEVEQLTATCQNLQWLKEELETKFGHWQKEQESIIQQLQTSLHDRNKEV
EDLSATLLCKLGPGQSEVAEELCQRLQRKERMLQDLLSDRNKQAVEHEMEIQGLLQSMGT
REQERQAAAEKMVQAFMERNSELQALRQYLGGKELMTSSQTFISNQPAGVTSIGPHHGEQ
TDQGSMQMPSRDDSTSLTAREEASIPRSTLGDSDTVAGLEKELSNAKEELELMA

Chromosome 3
Length
Position(start - end)
121,230
97,746,693 - 97,867,924
Orient to Chromosome minus
Link Location : (3:97746693-97867924)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Pde4dip (ENSMUSG00000038170)
Transcript ID ENSMUST00000107038
Reports
substitution
cSNPs11
Insertion91
Deletion130
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num9
non-synonymous num2
synonymous substitutions 97747771 (p.Thr781Thr), 97747801 (p.Thr771Thr), 97753040 (p.Leu653Leu), 97753106 (p.Leu631Leu), 97755514 (p.Tyr492Tyr), 97756968 (p.Ala436Ala), 97757550 (p.Leu356Leu), 97792823 (p.Ala250Ala), 97793213 (p.Asn216Asn),
non-synonymous substitutions 97747833 (p.Thr761Ala), 97792785 (p.Arg263Gln),
B6 transcript
(ENSMUST00000107038)
MEQTWARHYFGEDDGEMVPRTSSAAAFLSDTKDRGPPVQSQTWRSAERVPFGQAHSLRAF
EKPPLVQTQALRDFEKHLNDLKKENFSLKLRIYFLEERMQQKYEVSREDVYKRNIELKVE
VESLKRELQDRKQHLDKTWADAEDLNSQNEAELRRQVEERQQETEHVYELLGNKIQLLQE
EPRLAKNEATEMETLVEAEKRCNLELSERWTNAAKNREDAAGDQEKPDQYSEALAQRDRR
IEELRQSLAAQEGLVEQLSQEKRQLLHLLEEPASMEVQPVPKGLPTQQKPDLHETPTTQP
PVSESHLAELQDKIQQTEATNKILQEKLNDLSCELKSAQESSQKQDTTIQSLKEMLKSRE
SETEELYQVIEGQNDTMAKLREMLHQSQLGQLHSSEGIAPAQQQVALLDLQSALFCSQLE
IQRLQRLVRQKERQLADGKRCVQLVEAAAQEREHQKEAAWKHNQELRKALQHLQGELHSK
SQQLHVLEAEKYNEIRTQGQNIQHLSHSLSHKEQLIQELQELLQYRDNADKTLDTNEVFL
EKLRQRIQDRAVALERVIDEKFSALEEKDKELRQLRLAVRDRDHDLERLRCVLSANEATM
QSMESLLRARGLEVEQLTATCQNLQWLKEELETKFGHWQKEQESIIQQLQTSLHDRNKEV
EDLSATLLCKLGPGQSEVAEELCQRLQRKERMLQDLLSDRNKQAVEHEMEIQGLLQSMGT
REQERQAAAEKMVQAFMERNSELQALRQYLGGKELMTSSQTFISNQPAGVTSIGPHHGEQ
TDQGSMQMPSRDDSTSLTAREEASIPRSTLGDSDTVAGLEKELSNAKEELELMA
MSMv4 transcript
MEQTWARHYFGEDDGEMVPRTSSAAAFLSDTKDRGPPVQSQTWRSAERVPFGQAHSLRAF
EKPPLVQTQALRDFEKHLNDLKKENFSLKLRIYFLEERMQQKYEVSREDVYKRNIELKVE
VESLKRELQDRKQHLDKTWADAEDLNSQNEAELRRQVEERQQETEHVYELLGNKIQLLQE
EPRLAKNEATEMETLVEAEKRCNLELSERWTNAAKNREDAAGDQEKPDQYSEALAQRDRR
IEELRQSLAAQEGLVEQLSQEKQQLLHLLEEPASMEVQPVPKGLPTQQKPDLHETPTTQP
PVSESHLAELQDKIQQTEATNKILQEKLNDLSCELKSAQESSQKQDTTIQSLKEMLKSRE
SETEELYQVIEGQNDTMAKLREMLHQSQLGQLHSSEGIAPAQQQVALLDLQSALFCSQLE
IQRLQRLVRQKERQLADGKRCVQLVEAAAQEREHQKEAAWKHNQELRKALQHLQGELHSK
SQQLHVLEAEKYNEIRTQGQNIQHLSHSLSHKEQLIQELQELLQYRDNADKTLDTNEVFL
EKLRQRIQDRAVALERVIDEKFSALEEKDKELRQLRLAVRDRDHDLERLRCVLSANEATM
QSMESLLRARGLEVEQLTATCQNLQWLKEELETKFGHWQKEQESIIQQLQTSLHDRNKEV
EDLSATLLCKLGPGQSEVAEELCQRLQRKERMLQDLLSDRNKQAVEHEMEIQGLLQSMGT
REQERQAAAEKMVQAFMERNSELQALRQYLGGKELMTSSQAFISNQPAGVTSIGPHHGEQ
TDQGSMQMPSRDDSTSLTAREEASIPRSTLGDSDTVAGLEKELSNAKEELELMA
homology99.76 (834 / 834)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Pde4dip (ENSMUSG00000038170)
Transcript ID ENSMUST00000107038
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGATAACAGTGATCATGTGACTAAATAAAAAGGTTTATTTCAGAGGTAAA
AGGGAGCCCCGGGAGGTGAGCCCTCTAATTACAGCATGTCTGTCTTGTTTAAACATTGTA
CATAAGTAGATGTACAGAGTCTGGGCAGCCCCCTCCTTGGAAGGAAAGGCTTTCTGTGTG
CTCTCAGAAGAGCCACAGTTGGAGAGTTCACCTCCTGGGCTCTTAGGTCTCTTTAAGGCG
TTTGGAGCATTCTGGGATGTTCAGGAACACTTTGCCTCCTTGGAGCTTCTGGTAGAGCCC
GGTTGCTGTGGGAACTACAAGGGAAAGAAGCTAAACCAGGGGCTGATTGAGATAGGGACA
GCTAATCAGCCTACAAGGTTTGGTTAAGAAGGCTACATCCTGCTGGGCGGTGGTGGCGCA
AACCTTTAATCCCAGCACTTGGGAGACAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGC
CTGGTCTACAGAGTGAGTTCCAGGACAGCTACGACTACACAGAGAAACCCTGTCTAAAAA
AAAAAAAAAAAAAAGAAAGAAAGAAAAAGAAGAAGTTTTTGTCCGTGGATTAATGGTGAA
ACTAACAGGTCTCCTCTCTCAGAGAATCACCTTGTGCCCTGTGACTTCCCTAGGAAGCAC
AACCTACATTCAGGTTTGCATCCTTCTTAGACTCCATCTCTGACTCGGAGGCTACGTGTG
GGTGGGTGATGCAGGCTAAAGGAGGATCACCTTTCCAAGGTGCTCCCTGCTGTTGGTTGC
TTTTATCCAAATCTCTTCATTGGAATCAGTGAGGAACTGAGAGTCTGACAAGGGTCATCG
ATGGTCGCCTTTAGTGCATCAGTCCTTCGAGCCTTCTAAGGAGGCTGTGGGAGCCGGAGG
GTGTGTGCCGCGGCGGCGTGTCACCTGGGCGGGTCCCGGGCTGCGCGGAGCCCCGCCTCT
GCTCCCTCGCGGTTGACAGCTCAGCTGGTGCGGATCAGCTCGTGCCAGCC
1 EXON 1 97,867,905 97,868,248 - 2 344
AGTCGCGTCTCAGCCTGGGAGCGTGTGCGCCCGCGGCCTGGGCTCGGCGGCAGCGGCGTC
CAGCCACCTCCCGAGAACAGTCCCTGCCTTGTACCCAGAGCACCGTTAGCTTAGGGTGCG
GCTGAGGCCGATCGACTCGCTCTCTTCAAAAAGCAGAGAGCGGACCTTGTTCCTTCACCC
GGCACCGGCGCCAAGAGGAGCTGGGGAGGACGAAGAGACTCGGGTTTTTTGCGCTGGAGA
CTCCTGGGCAAGGCTTGGCATCTTCCCGGGCTGCGGCCACCCCGGGGTGACCGGCACCCC
GAAAGTGAGGAGAGCGCTTGGATCATGGAGCAGACCTGGGCCAG
INTRON 1 - 2 97,843,715 97,867,904 24,190
GTAGGGAGCGGCTTCTCCATTGCCG..........AATTAACCTATGCTTTCTTTCACAG
2 EXON 2 97,843,659 97,843,714 2 1 56
GCATTATTTTGGAGAAGATGATGGAGAGATGGTACCCAGAACAAGCAGTGCAGCAG
INTRON 2 - 3 97,841,786 97,843,658 1,873
GTAAGGATGCTGTGGACTGTGCCCT..........TCTTATTGTTCTGTTTCCTTGCCAG
3 EXON 3 97,841,634 97,841,785 1 0 152
CTTTTCTCAGTGACACTAAAGATCGAGGTCCTCCGGTTCAGTCGCAGACCTGGAGAAGTG
CTGAGAGGGTTCCCTTCGGGCAGGCACACTCCTTGAGAGCGTTTGAGAAGCCCCCTCTGG
TACAGACCCAGGCTCTTCGAGACTTTGAGAAG
INTRON 3 - 4 97,824,326 97,841,633 17,308
GTGAGACAGAAATATGGAATCAGGA..........TAATGGATATCGCACTCTGTCCCAG
4 EXON 4 97,824,215 97,824,325 0 0 111
CACCTCAATGACTTGAAGAAGGAGAACTTCAGCCTCAAGCTGCGCATCTACTTCCTGGAG
GAGCGCATGCAACAGAAGTATGAAGTCAGCCGGGAGGATGTCTACAAGCGG
INTRON 4 - 5 97,796,809 97,824,214 27,406
GTGAGTGAGTCCAGCGCGCCTGGGA..........GATGGTGAATGTGTTTTCTTTTCAG
5 EXON 5 97,796,732 97,796,808 0 2 77
AACATCGAGCTGAAGGTTGAAGTGGAGAGCCTGAAACGAGAACTCCAGGACAGGAAACAG
CATCTAGATAAAACATG
INTRON 5 - 6 97,793,609 97,796,731 3,123
GTGAGTTGCGAGTTGAGCTCTGTGA..........ATTAGCAAATGCTACATCATTGTAG
6 EXON 6 97,793,485 97,793,608 2 0 124
GGCCGATGCAGAGGATCTCAACAGCCAGAATGAGGCAGAGCTCCGGCGCCAGGTTGAAGA
ACGGCAGCAGGAGACAGAACACGTTTATGAGCTCCTAGGGAACAAGATCCAGCTGCTGCA
GGAG
INTRON 6 - 7 97,793,321 97,793,484 164
GTGAGGGGTGTCCACGGGTCCACAA..........CTCTAAGCTTTCCTGCCTTTTTCAG
7 EXON 7 97,793,145 97,793,320 0 2 176
GAACCCAGGCTAGCAAAGAATGAAGCCACAGAGATGGAGACTCTGGTGGAGGCAGAGAAG
AGGTGCAATCTGGAGCTCTCAGAGAGGTGGACGAATGCTGCCAAGAATAGGGAAGATGCA
GCAGGAGACCAGGAGAAGCCTGACCAATATTCTGAGGCACTGGCTCAGAGGGACAG
INTRON 7 - 8 97,792,857 97,793,144 288
GTAGGTGTTTTTGGTGGTCTTTTCC..........GATTCCTTTTATTTCTTTGGCCCAG
8 EXON 8 97,792,739 97,792,856 2 0 118
GAGAATTGAAGAGCTGAGGCAGAGCTTGGCTGCCCAGGAGGGGCTTGTGGAACAGCTGTC
TCAAGAGAAACAACAACTGTTACATCTGCTGGAGGAGCCAGCGAGCATGGAAGTGCAG
INTRON 8 - 9 97,758,931 97,792,738 33,808
GTAAGGCTCAGGCTGGGTGGCCTGG..........GCTTGTCTGCCCTGCTGCCTTCTAG
9 EXON 9 97,758,799 97,758,930 0 0 132
CCCGTGCCTAAAGGGTTACCCACGCAACAGAAGCCGGACTTGCATGAGACCCCTACAACC
CAGCCACCTGTGTCTGAGTCCCACCTGGCAGAACTCCAGGACAAAATCCAGCAAACAGAG
GCCACCAACAAG
INTRON 9 - 10 97,757,652 97,758,798 1,147
GTACATCAGGACTCGCTCTAGTCCC..........ACAGGACTTTCTCTGCTGAATTCAG
10 EXON 10 97,757,532 97,757,651 0 0 120
ATTCTTCAAGAGAAACTGAATGACCTGAGCTGTGAGCTGAAATCTGCACAGGAGTCATCT
CAGAAGCAAGATACGACAATCCAGAGCCTCAAGGAAATGCTAAAAAGCAGGGAAAGTGAG
INTRON 10 - 11 97,757,297 97,757,531 235
GTGAGAGGCTACGTGGTCACAGACC..........GCTATCCTCCTCCTCTCATTTCCAG
11 EXON 11 97,757,204 97,757,296 0 0 93
ACTGAGGAGCTGTACCAGGTGATCGAAGGACAAAATGACACAATGGCAAAGCTTCGGGAA
ATGCTGCACCAGAGCCAGCTCGGACAGCTCCAC
INTRON 11 - 12 97,757,097 97,757,203 107
GTACGTGAGGGTCACAGGCAGGAAT..........CTGATTGTGATTCTGCTCTTTTCAG
12 EXON 12 97,756,884 97,757,096 0 0 213
AGCTCAGAGGGCATTGCCCCTGCTCAGCAACAGGTAGCCCTGCTTGACCTTCAGAGCGCT
CTATTCTGCAGCCAGCTTGAAATACAGAGGCTCCAGAGGCTGGTCCGGCAGAAAGAACGC
CAGCTGGCTGATGGCAAGCGATGTGTGCAGTTAGTGGAGGCTGCAGCCCAGGAGAGAGAG
CACCAGAAGGAAGCTGCTTGGAAACATAACCAG
INTRON 12 - 13 97,755,598 97,756,883 1,286
GTAAATCATTAACCGTTCTCTTGCT..........TAAAAGCATGATCTGTTTATTTCAG
13 EXON 13 97,755,439 97,755,597 0 0 159
GAATTACGAAAGGCTTTACAGCACCTCCAAGGAGAACTGCACAGCAAGAGCCAGCAGCTC
CATGTTCTGGAGGCGGAAAAATATAATGAGATTCGAACCCAGGGACAAAACATCCAACAC
CTAAGTCACAGTCTGAGTCACAAAGAGCAGCTAATTCAG
INTRON 13 - 14 97,754,546 97,755,438 893
GTGAGTCCTCGACGAAAGCAGCCTC..........AAGGAAAGTACTTCTGTCTCATCAG
14 EXON 14 97,754,432 97,754,545 0 0 114
GAACTCCAGGAGCTCCTACAGTATCGTGACAACGCAGACAAAACTCTAGACACAAACGAA
GTGTTTCTTGAGAAATTGCGGCAACGAATACAAGACCGAGCTGTTGCTCTAGAG
INTRON 14 - 15 97,754,264 97,754,431 168
GTACTCGGCCAGTCCCCTTCCCACT..........CTTAGGAGCCTCACTTTCCTTGCAG
15 EXON 15 97,754,126 97,754,263 0 0 138
CGGGTCATAGATGAGAAGTTCTCTGCTCTAGAAGAAAAGGACAAGGAACTGCGGCAGCTT
CGCCTAGCTGTGAGGGACCGAGACCATGACTTAGAGAGACTGCGTTGTGTCCTGTCCGCC
AATGAAGCTACCATGCAG
INTRON 15 - 16 97,753,196 97,754,125 930
GTAAGAGCCAAACCCAGCCTACTCT..........ATGTTTGCCGTGTCTGTCCTTGTAG
16 EXON 16 97,753,016 97,753,195 0 0 180
AGCATGGAGAGTCTCCTGAGGGCCAGAGGCCTGGAAGTGGAGCAGTTAACTGCCACCTGC
CAAAACCTCCAGTGGCTGAAAGAAGAACTAGAAACCAAATTTGGCCATTGGCAGAAGGAA
CAGGAGAGCATCATTCAGCAATTGCAGACATCTCTGCACGACAGGAACAAAGAAGTAGAG
INTRON 16 - 17 97,752,004 97,753,015 1,012
GCAAGGCTCCACTAACGGGAACAAC..........ATTCACGCCGTCCCTTTCACATTAG
17 EXON 17 97,751,809 97,752,003 0 0 195
GATCTCAGCGCAACTCTGCTCTGTAAACTTGGACCGGGTCAGAGTGAAGTAGCTGAGGAA
CTGTGCCAGCGCTTGCAGCGAAAGGAACGGATGCTGCAGGACCTTCTGAGCGATCGGAAC
AAACAAGCCGTGGAGCACGAGATGGAGATCCAGGGGCTGCTCCAGTCGATGGGCACCAGG
GAGCAGGAAAGACAG
INTRON 17 - 18 97,747,936 97,751,808 3,873
GTAAGCGGTAGGGCAGAACCGGATG..........GTTTGCCGTGGTTCCTTCTTACCAG
18 EXON 18 97,747,765 97,747,935 0 0 171
GCTGCTGCAGAAAAAATGGTCCAGGCCTTCATGGAAAGGAACTCAGAACTGCAGGCCCTG
CGCCAGTATTTAGGGGGGAAGGAACTAATGACATCGTCTCAGGCGTTCATCTCTAACCAG
CCAGCTGGAGTGACTTCCATCGGGCCTCACCACGGAGAGCAAACTGATCAA
INTRON 18 - 19 97,747,599 97,747,764 166
GTAAGAACTCTAGACTCTGAGATAG..........ACCCCACAACCCTTCCAATTTTCAG
19 EXON 19 97,747,517 97,747,598 0 1 82
GGTTCTATGCAGATGCCCTCTCGAGATGATAGCACCTCACTGACTGCTAGAGAGGAGGCC
AGCATACCCCGGTCCACATTAG
INTRON 19 - 20 97,746,764 97,747,516 753
GTGAGTGCCAGCTTTGCTTCATAAA..........ACCTAGTGCTGTGCATTCGTTTCAG
20 EXON 20 97,746,693 97,746,763 1 - 71
GAGACTCGGACACAGTTGCAGGGCTGGAGAAAGAACTGAGCAACGCCAAGGAGGAGCTCG
AGCTCATGGCC
3' upstream sequence
AAAAAAGAAAGAGAAAGCCAGGTGAGCCTCCTGGCCACAGCCGGCCCGCCAGTTCCTAGG
TTTTCTTCCCAATGGTCTATATCTTAAGCATTGCGGTTCTATACATATAATGTCTGACTC
CAAATTCAAGGGCTCCTCTCTTCTCTTTGGAGAGAAACAGAAATTGTTGTATGTCCTATC
ACCTCAACAACATGCTCTTACTGCCCTGAGAAGCCCCGCATCTTTCTGTCTGTCCCTCCT
CCTATCAGGAAGCAAATGAAATAATTGTAAAGCATTTGTGTCAAACAGACAGGTTGTGAT
TCCTGCCCGGAAGGATGACATCAGACCTGTGCGTTTTGCACACAGTAAACAAGGGGTGTG
TGAGCAGAGCAACACTGTGGACTGGGTGTTCTCCACATGTACTGTGCTGTCCAAGGGCCT
GGACTCACGCCTCCATGTGAAATAGGCGCCGTCATCCCTAGTTTATGGGTAAAAAGATAG
AAATGCTAATTACTTTAAATATGATGTAGTGGCTCAACATAATGCCCAAATTGAGGTTTA
AACTCAAGCCTTAATACCCCAGATACTTCCTAAGGAGTCATTTCCTAGAGCAGATGCCCC
GCCCCTTCTGTTTGTGATCTGCCTGTCAATTGAGTTCTTAGAGGATCCCCCAGTCTTCCC
GGTGCGAGCAGCTGCATATCCAGCTGTGGTGTCGGTTAGAAAACAGCTTAGCGCTGTACA
GATGGACAGGCTAAACTGATGACTCACGTGTGGGGATTCAGTTAGGTCAGTGGGTGTCCT
GCGTCCCTAGAATCCCCTAGTGGCCTTCCGGCTCTGGTTCTGCTGGGATATTCGTGTGTG
GCACTGTGGTTCCCACACACCATTCCTCTTTTCCTTGTGCATTCCCTATCTAGAATAACG
TTCCCTTTTGCTTCTGACCTATTTTGAGGGTCATAAAATAAAGCAGGAACTGTGAATATG
TATTTTGAATAAATACTTTGTATTGCTCAACTTTATGCAT..........

Sequence Detail Report

Gene Symbol (Gene ID) Pde4dip (ENSMUSG00000038170)
Transcript ID ENSMUST00000107038
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 834 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information