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Target CDS Information

Gene Symbol (Gene ID) Pklr (ENSMUSG00000041237)
Cross Reference
CCDS CCDS50957.1
EMBL AC161600
GO GO:0000287, GO:0004743, GO:0006096, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Pklr-002
OTTP OTTMUSP00000019090
OTTT OTTMUST00000042490
Reactome R-MMU-1430728, R-MMU-70171, R-MMU-70326, ...show all
RefSeq_mRNA NM_001099779.1
RefSeq_mRNA_predicted XM_006501134.2, XM_006501135.2
RefSeq_peptide NP_001093249
RefSeq_peptide_predicted XP_006501197.1, XP_006501198.1
UCSC uc008pxq.1
UniParc UPI0000DBED37
Uniprot/SPTREMBL E9Q509
Vega_transcript OTTMUST00000042490, Pklr-002
Vega_translation 187642, OTTMUSP00000019090
Definition protein_id:ENSMUSP00000103106
translation:
MEGPAGYLRRASVAQLTQELGTAFFQQQQLPAAMADTFLEHLCLLDIDSEPVAARSTSII
ATIGPASRSVDRLKEMIKAGMNIARLNFSHGSHEYHAESIANIREAAESFATSPLSYRPV
AIALDTKGPEIRTGVLQGGPESEVEIVKGSQVLVTVDPKFRTRGDAKTVWVDYHNITQVV
AVGGRIYIDDGLISLVVRKIGPEGLVTEVEHGGFLGNRKGVNLPNAEVDLPGLSEQDLLD
LRFGVEHNVDIIFASFVRKASDVVAVRDALGPEGRGIKIISKIENHEGVKKFDEILEVSD
GIMVARGDLGIEIPAEKVFLAQKMMIGRCNLAGKPVVCATQMLESMITKARPTRAETSDV
ANAVLDGADCIMLSGETAKGSFPVEAVKMQHAIAREAEAAVYHRQLFEELRRAAPLSRDP
TEVTAIGAVEASFKCCAAAIIVLTKTGRSAQLLSRYRPRAAVIAVTRSAQAARQVHLSRG
VFPLLYREPPEAVWADDVDRRVQFGIESGKLRGFLRVGDLVIVVTGWRPGSGYTNIMRVL
TIS

Chromosome 3
Length
Position(start - end)
8,941
89,136,631 - 89,145,573
Orient to Chromosome plus
Link Location : (3:89136631-89145573)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Pklr (ENSMUSG00000041237)
Transcript ID ENSMUST00000107482
Reports
substitution
cSNPs7
Insertion9
Deletion14
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num7
non-synonymous num0
synonymous substitutions 89141541 (p.Ala106Ala), 89141547 (p.Glu108Glu), 89141610 (p.Pro129Pro), 89141813 (p.Thr155Thr), 89141822 (p.Pro158Pro), 89142273 (p.Leu223Leu), 89144991 (p.Gln503Gln),
non-synonymous substitutions
B6 transcript
(ENSMUST00000107482)
MEGPAGYLRRASVAQLTQELGTAFFQQQQLPAAMADTFLEHLCLLDIDSEPVAARSTSII
ATIGPASRSVDRLKEMIKAGMNIARLNFSHGSHEYHAESIANIREAAESFATSPLSYRPV
AIALDTKGPEIRTGVLQGGPESEVEIVKGSQVLVTVDPKFRTRGDAKTVWVDYHNITQVV
AVGGRIYIDDGLISLVVRKIGPEGLVTEVEHGGFLGNRKGVNLPNAEVDLPGLSEQDLLD
LRFGVEHNVDIIFASFVRKASDVVAVRDALGPEGRGIKIISKIENHEGVKKFDEILEVSD
GIMVARGDLGIEIPAEKVFLAQKMMIGRCNLAGKPVVCATQMLESMITKARPTRAETSDV
ANAVLDGADCIMLSGETAKGSFPVEAVKMQHAIAREAEAAVYHRQLFEELRRAAPLSRDP
TEVTAIGAVEASFKCCAAAIIVLTKTGRSAQLLSRYRPRAAVIAVTRSAQAARQVHLSRG
VFPLLYREPPEAVWADDVDRRVQFGIESGKLRGFLRVGDLVIVVTGWRPGSGYTNIMRVL
TIS*
MSMv4 transcript
MEGPAGYLRRASVAQLTQELGTAFFQQQQLPAAMADTFLEHLCLLDIDSEPVAARSTSII
ATIGPASRSVDRLKEMIKAGMNIARLNFSHGSHEYHAESIANIREAAESFATSPLSYRPV
AIALDTKGPEIRTGVLQGGPESEVEIVKGSQVLVTVDPKFRTRGDAKTVWVDYHNITQVV
AVGGRIYIDDGLISLVVRKIGPEGLVTEVEHGGFLGNRKGVNLPNAEVDLPGLSEQDLLD
LRFGVEHNVDIIFASFVRKASDVVAVRDALGPEGRGIKIISKIENHEGVKKFDEILEVSD
GIMVARGDLGIEIPAEKVFLAQKMMIGRCNLAGKPVVCATQMLESMITKARPTRAETSDV
ANAVLDGADCIMLSGETAKGSFPVEAVKMQHAIAREAEAAVYHRQLFEELRRAAPLSRDP
TEVTAIGAVEASFKCCAAAIIVLTKTGRSAQLLSRYRPRAAVIAVTRSAQAARQVHLSRG
VFPLLYREPPEAVWADDVDRRVQFGIESGKLRGFLRVGDLVIVVTGWRPGSGYTNIMRVL
TIS*
homology100.00 (544 / 544)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Pklr (ENSMUSG00000041237)
Transcript ID ENSMUST00000107482
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCAAGCAGATTTCTGCGTTCGAGGCCAGCCTGGTCTACACAGAGAAACCC
TGTCTAGAAGAGAAAAGGAAAGGAAAGGAAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGA
AGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGAGAAGAGAAGAGAAGAGA
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA
AAAAAAAGTTCCTCCCTCTTTTCCACAATCTAGTCCCCACATTCAAGCTCTTGCTCTGAG
AATATACCTAAGATTCTTGTCAATAAAATACAAAGAGAAAAGGATTGTATCACTGGCGAT
GAACTAGTCTCTATTGAAGCTGATGAACTGACAGTATGAATGGACTAAAAATTGACCAGG
AAAAACGGATGACCTAGGGGAAGGAAAGATGTGGGGACTGACAACCGACAGCCCTCCAGA
AGGGACTCTGTGTGGGGATGGGGCTGCCTACTGGGTGTGCCTCTTTTCTATTCTCTGGCT
CCTGCAGATAAGACCAGCAGTTAGGGTACACTCTCCTCCCAGTCTGTGGTTCTTGCAGCC
CCAGTCCCACACTTTGGAAGCATGTCTGTCCAAGAGAACGAGCTACCCCAGCAGCTCTGG
CCCTGGATCTTTAAGTCCCAAAAAGACTTAGCAAAGTCTGCTTTAAGTGGGGCTCCAGGA
GGTAAGAAGAGGAAGGGAAGCCACTGAACAGAGAGGAGAATTAGGGTAGAATCAGTGTTG
GGGGTGGAGGCCTTGGGGGAAGGATGCCCACTACAGCCTCTGTTAAATTTGATTTGAGCC
TTTGATCCAGGCTCTGCAGACAGGCCAAAGGGGATCCGGCAGCATGGACGCCACGGGGCA
CTCCCGTGGTTCCTGGACTCTGGCCCCCAGTGTACAAGGCTTCCATTGGCAAGAGAGATG
CTAGCTGGTTATACTTTAACCAGGACTGATCTCGTCTGTGCCAGGCCCCA
1 EXON 1 89,136,572 89,136,637 - 1 66
TCCCACTGACAAAGGCAGAGTATAAAGCAGACCCACAGACACTGCAGGTACGCAGCAGTA
TGGAAG
INTRON 1 - 2 89,136,638 89,137,223 586
GTGCTCTACTGAGCCGGGCTGGGTC..........GATCCTGAGTCTCCATCTACCGCAG
2 EXON 2 89,137,224 89,137,406 1 1 183
GGCCAGCAGGATACCTGAGACGTGCCAGTGTGGCCCAGCTGACCCAGGAGCTGGGCACTG
CCTTCTTCCAGCAGCAGCAACTGCCCGCAGCTATGGCGGACACCTTCCTGGAACACCTCT
GCCTTCTGGATATCGACTCAGAGCCTGTGGCCGCTAGGAGCACCAGCATCATTGCCACCA
TCG
INTRON 2 - 3 89,137,407 89,141,314 3,908
GTAAGACCACCCAACCCTGGGCCGC..........TTTCTTAGTGGCTCTCTGGTTCCAG
3 EXON 3 89,141,315 89,141,406 1 0 92
GGCCGGCGTCACGCTCTGTGGACCGCCTCAAGGAGATGATCAAGGCAGGGATGAACATTG
CACGACTCAACTTCTCCCATGGCTCCCATGAG
INTRON 3 - 4 89,141,407 89,141,505 99
GTGTGGGGAAGTCGTGGAGGGCGGA..........TGCTCTCTCTCTCTCTCACTGCTAG
4 EXON 4 89,141,506 89,141,637 0 0 132
TACCATGCAGAGTCCATCGCCAACATTCGGGAGGCAGCTGAGAGCTTTGCAACCTCCCCA
CTCAGCTACAGACCCGTGGCCATCGCCCTGGACACCAAGGGTCCTGAGATACGCACTGGA
GTCCTGCAGGGG
INTRON 4 - 5 89,141,638 89,141,762 125
GTGAGAAGCAAGCCTCTGTCTGGGG..........TCTCTGCCCATCCCACCCCCTCCAG
5 EXON 5 89,141,763 89,141,949 0 1 187
GGTCCAGAGTCGGAGGTGGAAATTGTGAAGGGTTCACAGGTGCTGGTGACCGTGGATCCA
AAGTTCCGGACAAGGGGCGATGCAAAGACAGTGTGGGTGGACTACCACAATATCACCCAG
GTCGTTGCAGTGGGGGGCCGCATCTACATTGACGACGGGCTCATCTCCTTAGTGGTGCGG
AAAATTG
INTRON 5 - 6 89,141,950 89,142,205 256
GTACAGAAATGCTTTCTGATCTTAT..........GACACTGGCTCTTTTATACCTGCAG
6 EXON 6 89,142,206 89,142,476 1 2 271
GCCCAGAGGGACTGGTGACCGAAGTGGAACACGGTGGTTTCTTGGGCAACAGGAAGGGTG
TGAACTTACCAAATGCCGAGGTGGACCTGCCTGGGCTATCAGAGCAAGATCTTTTGGATC
TGCGCTTCGGGGTGGAGCATAATGTGGACATCATCTTTGCCTCCTTTGTACGAAAAGCCA
GTGATGTGGTGGCAGTCCGAGATGCCCTAGGGCCAGAAGGACGGGGCATCAAAATTATCA
GCAAAATCGAGAACCATGAAGGCGTGAAGAA
INTRON 6 - 7 89,142,477 89,142,591 115
GTGAGGCTTGGTCTTTGGTTCCGTC..........AGCCTGGATTCCTCCAACCACCCAG
7 EXON 7 89,142,592 89,142,742 2 0 151
GTTTGATGAGATCCTAGAAGTGAGCGATGGCATCATGGTGGCTCGGGGTGACCTTGGCAT
TGAGATCCCAGCAGAGAAGGTTTTCTTGGCTCAGAAGATGATGATTGGACGCTGCAACCT
GGCTGGCAAGCCTGTCGTTTGTGCCACACAG
INTRON 7 - 8 89,142,743 89,142,961 219
GTCTGGAGTGAACCCTTGGGCTAGG..........CTTTGCCATCCACGGTGTCATTCAG
8 EXON 8 89,142,962 89,143,114 0 0 153
ATGCTGGAGAGCATGATCACTAAGGCTCGACCAACTCGGGCGGAGACAAGCGATGTGGCC
AATGCTGTGCTGGATGGGGCTGACTGTATCATGCTGTCTGGAGAGACCGCCAAAGGCAGT
TTCCCCGTGGAGGCTGTAAAGATGCAACATGCG
INTRON 8 - 9 89,143,115 89,143,209 95
GTAGGAACTCAGTCCTGAAAAGCCG..........CAACCTGACCTACTGGTGCCTGCAG
9 EXON 9 89,143,210 89,143,376 0 2 167
ATTGCCCGGGAGGCAGAGGCCGCTGTGTACCACCGCCAGTTGTTTGAGGAGCTACGCCGG
GCAGCGCCGCTGAGCCGTGACCCAACCGAGGTCACTGCAATTGGAGCCGTGGAGGCTTCC
TTCAAGTGCTGTGCCGCAGCCATCATTGTGCTGACAAAGACTGGCCG
INTRON 9 - 10 89,143,377 89,144,825 1,449
GTGAGAAAAGTATTGGAAACAGGGC..........AGCTAACCCTCTCTCCCTCATACAG
10 EXON 10 89,144,826 89,145,007 2 1 182
CTCAGCTCAGCTTCTGTCTCGCTACCGACCTCGGGCTGCTGTCATTGCTGTGACTCGTTC
TGCCCAGGCTGCCCGACAGGTCCACCTGTCCCGAGGAGTCTTCCCCTTGCTCTACCGTGA
GCCTCCAGAGGCTGTCTGGGCAGATGATGTGGACCGAAGGGTCCAGTTTGGCATCGAAAG
TG
INTRON 10 - 11 89,145,008 89,145,466 459
GTGAGCCTTGCCCTCTCCTCCCCAG..........TGACTATCACCTTTTCCTCCACCAG
11 EXON 11 89,145,467 89,146,784 1 - 1,318
GAAAGCTTCGTGGCTTCCTCCGAGTTGGTGATCTGGTGATTGTGGTGACAGGCTGGCGAC
CTGGCTCTGGCTATACCAACATTATGCGGGTGCTGACCATATCCTGAAACGCCTCTCCCC
TTTCTGACCTAGTTGCACCCCATTTTTTTCAACCCACACCCCTCCCATAGTCCCACATCT
GCCATCTAGCCACAGTCTGGTACTTCACACAGGCCCTGAATGTCTGCGTACAATTACGCA
CCGGCCACCCAGCAGCATCAGTCGTATATCCCTGTCTCAATCCGCTCAGCTGGACTCTAA
GATGCCCTGAGCCTTTAATCCCAGCCCAGCTGGTTAATTCGATTCCTCCTGGGTCCTGAT
AATTAGAACGGGGGAGTGGAGACTGGGTAAACTTATCCAAATTCCATAGAACAATTATTT
TAAAACACTCTGTCCTCGGATATAGCCCTCATGACCAGTTCCCTAGCAAAGTGTCACCTC
CTGATGGCCTCAAGTCAGGGTAGAATACTCCTTCAGGGAGCACAGCTCCACACTTTAGGG
AAGGCTGGGGTAGATGGGTGCTGGAGAGAACTAAGCTAAACTGGCTTTTTTCTTTTCTTT
TTTTTCTGATACAAGGTCTCATTGTATAGCTCTGACTGGCCCCAGACTCCTAGAAATCCT
CCTGCCTGACCCTCCTGAGGGGGTAAGGACTGCAGGCATGAGTGACCAGCTGGACTTTAG
GTAGTCTTACTTTCTTACTGACTCCACAAACCATGGAGCCGAGCTTACGAGCCACTAATC
TGGCTGTTCTCTTGCCCACTGATCTGCTGGGTCAGATGAAATTCTTCCACAACCACTTTG
TCCCCACATACAGATCAGAAGCAAAAATGAATCTTTTCTTTTAAACCCAACTGTTTAGGT
GCAATTATAAAAAACAACTCCCACAGGCAAAGAATCCCAGACTCTCCCACCCAAAGAGTT
GTGTGGTCCTGGCCCCATGCTACAGTGTACTTCTGAAGGGGAACAGAGCGGGTGGGCAGG
GGATTATTCTTGTCCCTGAGAAGGTGGAGGGGCTACTGGCCCACCCTTCCTAGGATTGGA
TACTCCAGGCCTCCCTCTTCTTCACAACAGCAAACCCAGATGAGGATGAAAAAACTAAGC
TCAGGCCTCCTGCTCCCCCCTACCCCCCCCCCCCCCCGGCCACCACCTCATCACAGAATT
TGAGTATTGCTGCAGATGGCATTGTGCAAGGACCACAAAGATGTTCCCCAGGCCCCTACC
AGAAGGTGGGGAGGACAAAGGAATGAGTGAATAAGTGAACAAGTCAAATTAGCAAATG
3' upstream sequence
AATAAATAAAATTAATAAACGACCAAATAAATAAGACAAAGAGGGAAAGATAAAAGGTCA
CATGAGGATTCAGCCCCTGGCCCCCTACCTGGGGGGAACTAGGCTGGCACAGTAGGTAAG
GAGGTGCCGCGTGCCCCCTAGCTTTAGGGGCAACACCACTGAGGCAGGGGGCACAGTGAA
GAGCAGCTTCTAGCTCATAAAGGTAGTGCGTCCACACAGGAGCTGCGGAGGGCAGACTAC
AGTGGGCAGACGTGAATTCTCACTTGGTGTGGACAAGGAGGGCCCACAGGTGCCAGTCAG
AGGGTCGATGTTCACACCCAGGGCTCTAGACATCTGTTGGCTGTACTAGATAATTGATGG
TACCCAGCTACGACAAAGGAGATGGGAAGAGAGGACGCACTGGCACCACCTGCAGGGTCA
CTGACAGGGAGACAGCCGTCTAGTTACTCGGCAGTGATGGAGGCAGCAAGTACTTGTGCT
TAATAAAGGCAGGGCTGTGGGCCCAGGCCTGCGCCTGGCAGGACCGTGGCCTGGGGACAC
CCTTGTTAAGGGGCTTCGAGTTATTTCTACTTGGCAGTGGATACACAGTACCTAGCACAG
TGCCTTGAACATGGTAGGCATGGGGTACCTATGACAAATGGGTATGTGATTAGGATTAGC
AGGCTGCAGCTGCTTTGAGCTGAGGACACAGAGAACAGCTTTGTGGTGATAAAGGGCAGT
ATGTTAGGTCCCCCACAGCCTTCCCCCAAGGGGCGTCTACCCTCGGGCACACGTTATTGC
GTGCCAATAGCTAAGGCCAGTGTAACCTAGGATTTCACATGTTGGCAGAAATTTGGGGAC
CTCTGGGGGTAACTGGCTCAGGCACTGATGACCTGGGTGGCTGGACTGTCCCTGGAGGTT
TGGCCAAGAGCCCAGAGGGGGGCAGGCGCTCACTTCCAGAGCCTTTACGCCTAGGAGAGC
CATCCCCTGTTGCTCGCTGAGGCAGAGAGGGTTGCGAGGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Pklr (ENSMUSG00000041237)
Transcript ID ENSMUST00000107482
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 544 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information