MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Sema4a (ENSMUSG00000028064)

Cross Reference

EMBL	AC102388
GO	GO:0016021
goslim_goa	GO:0005575
MGI_trans_name	Sema4a-002
OTTP	OTTMUSP00000023498
OTTT	OTTMUST00000050357
RefSeq_peptide_predicted	XP_006501253.1, XP_011238354.1
UCSC	uc008pvh.2
UniParc	UPI0000F22263
Uniprot/SPTREMBL	D3YWV5

Vega_transcript	OTTMUST00000050357, Sema4a-002
Vega_translation	187559, OTTMUSP00000023498

Definition

protein_id:ENSMUSP00000103155
translation:

MIPWPASERKKTECAFKKKSNEELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGM
LYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETAS
EFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPA
DSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEV
SPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHV
VMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRV
PRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMA
RSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLL
PQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGAS
MAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRD
QHLQPSKDHRTSASDVDADNNHLGAEVA

Chromosome

Length
Position(start - end)

16,312
88,436,660 - 88,452,973

Orient to Chromosome

minus

Link

Location : (3:88436660-88452973)
/

Detail Map

name	Sema4a (ENSMUSG00000028064)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Sema4a note : sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A [Source:MGI Symbol;Acc:MGI:107560]

name	Mir7011 (ENSMUSG00000098655)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Mir7011 note : microRNA 7011 [Source:MGI Symbol;Acc:MGI:5531059]

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000029700

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000107531

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000166237

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000165898

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000169222

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000185137

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000184487

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000127436

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000184876

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000147200

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000125526

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000141471

name	Sema4a (ENSMUSG00000028064)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000123753

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS17475.1 Uniprot/SWISSPROT:Q62178 RefSeq_peptide:NP_038686 RefSeq_mRNA:NM_013658.3 RefSeq_mRNA_predicted:XM_006501188.2 RefSeq_mRNA_predicted:XM_006501189.1 RefSeq_peptide_predicted:XP_006501250.1 RefSeq_peptide_predicted:XP_006501251.1 RefSeq_peptide_predicted:XP_006501252.1 Vega_transcript:OTTMUST00000050356 Vega_transcript:Sema4a-001 UCSC:uc008pvh.2 EMBL:AC102388 EMBL:CH466547 EMBL:X85991 GO:GO:0001525 GO:GO:0002292 GO:GO:0005886 GO:GO:0007409 GO:GO:0008360 GO:GO:0010594 GO:GO:0016021 GO:GO:0016525 GO:GO:0045063 GO:GO:0071526 MGI_trans_name:Sema4a-001 Vega_translation:187558 Vega_translation:OTTMUSP00000023497 goslim_goa:GO:0000902 goslim_goa:GO:0002376 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0048646 goslim_goa:GO:0048856 protein_id:CAA59983.1 protein_id:EDL15277.1 protein_id:EDL15278.1 protein_id:EDL15279.1 OTTP:OTTMUSP00000023497 OTTT:OTTMUST00000050356 Reactome:R-MMU-1266738 Reactome:R-MMU-373755 Reactome:R-MMU-416700 Reactome:R-MMU-422475 UniParc:UPI0000022DA6
definition	note : transcript_id=ENSMUST00000029700 protein_id : ENSMUSP00000029700 translation : MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFIELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPADSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEVSPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHVVMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMARSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLLPQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGASMAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRDQHLQPSKDHRTSASDVDADNNHLGAEVA

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide_predicted:XP_006501253.1 RefSeq_peptide_predicted:XP_011238354.1 Vega_transcript:OTTMUST00000050357 Vega_transcript:Sema4a-002 Uniprot/SPTREMBL:D3YWV5 UCSC:uc008pvh.2 EMBL:AC102388 GO:GO:0016021 MGI_trans_name:Sema4a-002 Vega_translation:187559 Vega_translation:OTTMUSP00000023498 goslim_goa:GO:0005575 OTTP:OTTMUSP00000023498 OTTT:OTTMUST00000050357 UniParc:UPI0000F22263
definition	note : transcript_id=ENSMUST00000107531 protein_id : ENSMUSP00000103155 translation : MIPWPASERKKTECAFKKKSNEELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPADSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEVSPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHVVMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMARSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLLPQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGASMAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRDQHLQPSKDHRTSASDVDADNNHLGAEVA

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS17475.1 Uniprot/SWISSPROT:Q62178 RefSeq_peptide:NP_001156961 RefSeq_mRNA:NM_001163489.1 RefSeq_mRNA_predicted:XM_006501191.1 RefSeq_mRNA_predicted:XM_011240051.1 RefSeq_peptide_predicted:XP_006501250.1 RefSeq_peptide_predicted:XP_006501254.1 RefSeq_peptide_predicted:XP_011238353.1 UCSC:uc008pvi.2 EMBL:AC102388 EMBL:CH466547 EMBL:X85991 GO:GO:0001525 GO:GO:0002292 GO:GO:0005886 GO:GO:0007409 GO:GO:0008360 GO:GO:0010594 GO:GO:0016021 GO:GO:0016525 GO:GO:0045063 GO:GO:0071526 MGI_trans_name:Sema4a-202 goslim_goa:GO:0000902 goslim_goa:GO:0002376 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0048646 goslim_goa:GO:0048856 protein_id:CAA59983.1 protein_id:EDL15277.1 protein_id:EDL15278.1 protein_id:EDL15279.1 Reactome:R-MMU-1266738 Reactome:R-MMU-373755 Reactome:R-MMU-416700 Reactome:R-MMU-422475 UniParc:UPI0000022DA6
definition	note : transcript_id=ENSMUST00000166237 protein_id : ENSMUSP00000125909 translation : MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFIELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPADSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEVSPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHVVMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMARSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLLPQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGASMAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRDQHLQPSKDHRTSASDVDADNNHLGAEVA

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS17475.1 Uniprot/SWISSPROT:Q62178 RefSeq_peptide:NP_001156962 RefSeq_mRNA:NM_001163490.1 RefSeq_peptide_predicted:XP_006501250.1 UCSC:uc012crw.1 EMBL:AC102388 EMBL:CH466547 EMBL:X85991 GO:GO:0001525 GO:GO:0002292 GO:GO:0005886 GO:GO:0007409 GO:GO:0008360 GO:GO:0010594 GO:GO:0016021 GO:GO:0016525 GO:GO:0045063 GO:GO:0071526 MGI_trans_name:Sema4a-201 goslim_goa:GO:0000902 goslim_goa:GO:0002376 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0048646 goslim_goa:GO:0048856 protein_id:CAA59983.1 protein_id:EDL15277.1 protein_id:EDL15278.1 protein_id:EDL15279.1 Reactome:R-MMU-1266738 Reactome:R-MMU-373755 Reactome:R-MMU-416700 Reactome:R-MMU-422475 UniParc:UPI0000022DA6
definition	note : transcript_id=ENSMUST00000165898 protein_id : ENSMUSP00000128510 translation : MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFIELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPADSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEVSPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHVVMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMARSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLLPQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGASMAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRDQHLQPSKDHRTSASDVDADNNHLGAEVA

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS17475.1 Uniprot/SWISSPROT:Q62178 RefSeq_peptide:NP_001156963 RefSeq_mRNA:NM_001163491.1 RefSeq_peptide_predicted:XP_006501250.1 UCSC:uc012crv.1 EMBL:AC102388 EMBL:CH466547 EMBL:X85991 GO:GO:0001525 GO:GO:0002292 GO:GO:0005886 GO:GO:0007409 GO:GO:0008360 GO:GO:0010594 GO:GO:0016021 GO:GO:0016525 GO:GO:0045063 GO:GO:0071526 MGI_trans_name:Sema4a-203 goslim_goa:GO:0000902 goslim_goa:GO:0002376 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0048646 goslim_goa:GO:0048856 protein_id:CAA59983.1 protein_id:EDL15277.1 protein_id:EDL15278.1 protein_id:EDL15279.1 Reactome:R-MMU-1266738 Reactome:R-MMU-373755 Reactome:R-MMU-416700 Reactome:R-MMU-422475 UniParc:UPI0000022DA6
definition	note : transcript_id=ENSMUST00000169222 protein_id : ENSMUSP00000128887 translation : MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFIELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPADSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEVSPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHVVMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMARSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLLPQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGASMAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRDQHLQPSKDHRTSASDVDADNNHLGAEVA

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050362 Vega_transcript:Sema4a-007 Uniprot/SPTREMBL:V9GWW2 EMBL:AC102388 MGI_trans_name:Sema4a-007 Vega_translation:187560 Vega_translation:OTTMUSP00000065315 OTTP:OTTMUSP00000065315 OTTT:OTTMUST00000050362 UniParc:UPI0003B92978
definition	note : transcript_id=ENSMUST00000185137 protein_id : ENSMUSP00000138858 translation : ELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVGGGYCLLNRLKR

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050363 Vega_transcript:Sema4a-008 Uniprot/SPTREMBL:V9GXF5 EMBL:AC102388 MGI_trans_name:Sema4a-008 Vega_translation:187561 Vega_translation:OTTMUSP00000065316 OTTP:OTTMUSP00000065316 OTTT:OTTMUST00000050363 UniParc:UPI0003B929FF
definition	note : transcript_id=ENSMUST00000184487 protein_id : ENSMUSP00000139126 translation : MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFIPLPPSRNSKIPSCCPS

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050359 Vega_transcript:Sema4a-004 Uniprot/SPTREMBL:D3YZ30 UCSC:uc012crw.1 EMBL:AC102388 MGI_trans_name:Sema4a-004 Vega_translation:187562 Vega_translation:OTTMUSP00000023500 OTTP:OTTMUSP00000023500 OTTT:OTTMUST00000050359 UniParc:UPI0000F22265
definition	note : transcript_id=ENSMUST00000127436 protein_id : ENSMUSP00000118706 translation : MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFIELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASF

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050364 Vega_transcript:Sema4a-009 Uniprot/SPTREMBL:V9GXH9 EMBL:AC102388 MGI_trans_name:Sema4a-009 Vega_translation:187563 Vega_translation:OTTMUSP00000065317 OTTP:OTTMUSP00000065317 OTTT:OTTMUST00000050364 UniParc:UPI0003B929F1
definition	note : transcript_id=ENSMUST00000184876 protein_id : ENSMUSP00000139159 translation : MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFITCDPGILGSQPLPPSRNSKIPSCCPS

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050360 Vega_transcript:Sema4a-005 Uniprot/SPTREMBL:D3YUM4 EMBL:AC102388 MGI_trans_name:Sema4a-005 Vega_translation:187564 Vega_translation:OTTMUSP00000023501 OTTP:OTTMUSP00000023501 OTTT:OTTMUST00000050360 UniParc:UPI0000F22268
definition	note : transcript_id=ENSMUST00000147200 protein_id : ENSMUSP00000123061 translation : MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTECAFKKKSNETQCFNFIRVLVSYNATHLYACGTFAFSPACTFIELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGMLYSGTMNNFLG

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050366 Vega_transcript:Sema4a-011 Uniprot/SPTREMBL:D3Z336 EMBL:AC102388 MGI_trans_name:Sema4a-011 Vega_translation:187565 Vega_translation:OTTMUSP00000023503 OTTP:OTTMUSP00000023503 OTTT:OTTMUST00000050366 UniParc:UPI0000F22267
definition	note : transcript_id=ENSMUST00000125526 protein_id : ENSMUSP00000119028 translation : MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKGLRDFDTLLLSDDGNTLYVGAREAVLALNIQNPGIPRLKNMIPWPASERKKTEC

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050358 Vega_transcript:Sema4a-003 Uniprot/SPTREMBL:D3YVM6 EMBL:AC102388 MGI_trans_name:Sema4a-003 Vega_translation:187566 Vega_translation:OTTMUSP00000023499 OTTP:OTTMUSP00000023499 OTTT:OTTMUST00000050358 UniParc:UPI0000F22264
definition	note : transcript_id=ENSMUST00000141471 protein_id : ENSMUSP00000114330 translation : MALPSLGQDSWSLLRVFFFQLFLLPSLPPASGTGGQGPMPRVKYHAGDGHRALSFFQQKG

name	Sema4a (ENSMUSG00000028064) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050365 Vega_transcript:Sema4a-010 Uniprot/SPTREMBL:D3YWK5 MGI_trans_name:Sema4a-010 Vega_translation:187567 Vega_translation:OTTMUSP00000023502 OTTP:OTTMUSP00000023502 OTTT:OTTMUST00000050365 UniParc:UPI0000F22266
definition	note : transcript_id=ENSMUST00000123753 protein_id : ENSMUSP00000120084 translation : MALPSLGQDSWSLLRVF

name
type	STS
link
xref	UniSTS_NUM:185541 UniSTS:AI132332 WI_MRC-RH:375386
definition	note : map_weight=1 standard_name : AI132332

name
type	STS
link
xref	UniSTS_NUM:185542 UniSTS:X85991 WI_MRC-RH:5100
definition	note : map_weight=1 standard_name : X85991

name
type	misc_feature
link
xref
definition	note : contig AC102388.7 1..123947(-1)

name	Sema4a (ENSMUSG00000028064)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050371 Vega_transcript:OTTMUST00000050371 MGI_trans_name:Sema4a-016 OTTT:OTTMUST00000050371
definition	note : retained_intron note : transcript_id=ENSMUST00000156108

name	Sema4a (ENSMUSG00000028064)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050370 Vega_transcript:OTTMUST00000050370 MGI_trans_name:Sema4a-015 OTTT:OTTMUST00000050370
definition	note : retained_intron note : transcript_id=ENSMUST00000135539

name	Sema4a (ENSMUSG00000028064)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050369 Vega_transcript:OTTMUST00000050369 MGI_trans_name:Sema4a-014 OTTT:OTTMUST00000050369
definition	note : retained_intron note : transcript_id=ENSMUST00000149145

name	Sema4a (ENSMUSG00000028064)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050361 Vega_transcript:OTTMUST00000050361 MGI_trans_name:Sema4a-006 OTTT:OTTMUST00000050361
definition	note : retained_intron note : transcript_id=ENSMUST00000135732

name	Sema4a (ENSMUSG00000028064)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050368 Vega_transcript:OTTMUST00000050368 MGI_trans_name:Sema4a-013 OTTT:OTTMUST00000050368
definition	note : retained_intron note : transcript_id=ENSMUST00000184972

name	Sema4a (ENSMUSG00000028064)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000050367 Vega_transcript:OTTMUST00000050367 MGI_trans_name:Sema4a-012 OTTT:OTTMUST00000050367
definition	note : processed_transcript note : transcript_id=ENSMUST00000146921

name	Mir7011 (ENSMUSG00000098655)
type	misc_RNA
link	VEGA Ensembl MGI
xref	RefSeq_ncRNA:NR_105978 UCSC:uc033huu.1 MGI_trans_name:Mir7011-201 RNACentral:URS000075B90B
definition	note : miRNA note : transcript_id=ENSMUST00000183768

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Sema4a (ENSMUSG00000028064)
Transcript ID	ENSMUST00000107531

Reports
substitution
cSNPs	6
Insertion	9
Deletion	18
SNPs	+1kb 88456143(c.-3170G>T), 88456427(c.-3454G>A), 88456685(c.-3712C>A), 88456844(c.-3871G>A), 88457048(c.-4075C>G), 88457295(c.-4322C>T), 88457327(c.-4354T>C), 88457346(c.-4373A>G), 88457746(c.-4773C>T), 88457973(c.-5000A>G), 88458174(c.-5201G>C), 88458317(c.-5344G>A), 88458359(c.-5386T>C), 88458408(c.-5435T>C), 88458419(c.-5446C>T), 88458426(c.-5453T>C), 88458440(c.-5467G>A), 88458609(c.-5636C>T), 88458610(c.-5637A>T), 88458695(c.-5722C>A), 88459325(c.-6352T>C), 88459624(c.-6651C>T), 88459998(c.-7025T>C), 88460063(c.-7090T>C), 88460180(c.-7207T>C), 88460255(c.-7282C>T), 88460261(c.-7288G>A), 88460270(c.-7297G>A), 88460343(c.-7370A>C), 88460398(c.-7425G>A), 88460475(c.-7502C>T), 88460531(c.-7558G>A), 88460535(c.-7562C>T), 88460555(c.-7582C>T), 5'UTR 88452978(c.-5A>G), 88452980(c.-7A>G), CDS 88436972(c.1575T>C), 88437056(c.1491C>G), 88437133(c.1414G>A), 88437867(c.1230G>A), 88438518(c.963T>C), 88448117(c.612A>G), 3'UTR 88436358(c.302G>A), 88436451(c.209A>G), INTRON 88437462(c.1295-210G>A), 88437509(c.1295-257A>G), 88437684(c.1294+119G>A), 88437736(c.1294+67T>C), 88438609(c.920-48G>A), 88438674(c.920-113A>G), 88438683(c.920-122C>T), 88438690(c.920-129A>G), 88438745(c.920-184C>G), 88438867(c.920-306A>G), 88438868(c.920-307C>T), 88438891(c.920-330G>T), 88438892(c.920-331A>G), 88439038(c.920-477C>G), 88439082(c.920-521C>A), 88439124(c.920-563T>C), 88439160(c.920-599A>G), 88439164(c.920-603T>C), 88439208(c.920-647A>G), 88439264(c.920-703A>G), 88439337(c.920-776G>A), 88439343(c.920-782C>T), 88439507(c.920-946C>G), 88439532(c.920-971A>G), 88439550(c.920-989C>T), 88439651(c.919+1047T>C), 88439695(c.919+1003T>C), 88439696(c.919+1002A>T), 88440058(c.919+640C>T), 88440078(c.919+620C>T), 88440236(c.919+462A>T), 88440287(c.919+411T>C), 88440402(c.919+296G>A), 88440452(c.919+246G>A), 88440453(c.919+245A>C), 88440481(c.919+217C>T), 88440690(c.919+8T>G), 88440695(c.919+3A>G), 88440892(c.739-14C>T), 88440977(c.739-99A>G), 88440997(c.739-119G>A), 88441139(c.739-261C>G), 88441146(c.739-268C>T), 88441156(c.739-278T>G), 88441158(c.739-280T>G), 88441159(c.739-281C>T), 88441268(c.739-390T>C), 88441371(c.739-493C>T), 88441377(c.739-499T>C), 88441416(c.739-538A>G), 88441439(c.739-561G>A), 88441660(c.739-782C>A), 88441671(c.739-793G>A), 88441747(c.739-869G>A), 88442367(c.739-1489C>T), 88442457(c.739-1579G>A), 88442492(c.739-1614G>T), 88442513(c.739-1635T>C), 88442695(c.739-1817C>T), 88442765(c.739-1887C>T), 88442932(c.739-2054A>G), 88442950(c.739-2072G>C), 88442961(c.739-2083T>C), 88443036(c.739-2158G>A), 88443111(c.739-2233G>A), 88443262(c.739-2384A>G), 88443346(c.739-2468C>T), 88443541(c.739-2663G>A), 88443561(c.739-2683A>G), 88443598(c.739-2720T>C), 88443763(c.739-2885T>A), 88443765(c.739-2887T>C), 88443783(c.739-2905G>T), 88443789(c.739-2911C>T), 88443860(c.739-2982C>T), 88444142(c.739-3264C>T), 88444153(c.739-3275G>A), 88444161(c.739-3283G>A), 88444417(c.739-3539G>A), 88444420(c.739-3542G>A), 88444727(c.738+3264C>T), 88445293(c.738+2698T>C), 88445401(c.738+2590C>T), 88445409(c.738+2582G>T), 88445456(c.738+2535T>C), 88445467(c.738+2524C>T), 88445505(c.738+2486A>G), 88445513(c.738+2478T>G), 88445528(c.738+2463T>C), 88445682(c.738+2309G>A), 88445736(c.738+2255C>T), 88445794(c.738+2197C>T), 88445811(c.738+2180A>G), 88445880(c.738+2111G>C), 88446035(c.738+1956A>G), 88446090(c.738+1901A>G), 88446172(c.738+1819G>A), 88446250(c.738+1741A>C), 88446455(c.738+1536T>C), 88446537(c.738+1454T>A), 88446556(c.738+1435T>C), 88446687(c.738+1304C>T), 88447050(c.738+941C>A), 88447263(c.738+728A>G), 88447305(c.738+686C>T), 88447537(c.738+454T>C), 88447555(c.738+436C>T), 88447614(c.738+377A>G), 88447867(c.738+124A>C), 88447903(c.738+88G>T), 88448211(c.588-70C>T), 88448219(c.588-78T>C), 88448312(c.588-171T>C), 88448723(c.588-582C>T), 88448797(c.588-656T>A), 88449099(c.587+581G>C), 88449207(c.587+473A>G), 88449320(c.587+360A>G), 88449378(c.587+302A>G), 88450384(c.289+127A>G), 88450753(c.173-126T>G), 88451055(c.172+290T>C), 88451911(c.66+109T>C), 88451988(c.66+32C>A), 88451993(c.66+27G>T), 88452850(c.3+121T>C), 88453159(c.-158-28T>G), 88453257(c.-158-126A>G), 88453261(c.-158-130A>G), 88453514(c.-158-383G>T), 88453819(c.-158-688G>A), 88454167(c.-158-1036C>A), 88454171(c.-158-1040C>A), 88454175(c.-158-1044C>A), 88454275(c.-158-1144A>G), 88454781(c.-159+763C>T), 88454812(c.-159+732C>T), 88454964(c.-159+580G>A), 88454993(c.-159+551A>G), 88455023(c.-159+521G>A), 88455174(c.-159+370A>C), 88455379(c.-159+165A>G), 88455495(c.-159+49C>T), -1kb 88430975(c.5685C>A), 88430997(c.5663G>A), 88431133(c.5527G>A), 88431369(c.5291A>C), 88431396(c.5264C>T), 88431554(c.5106C>T), 88431626(c.5034A>G), 88431762(c.4898C>T), 88431916(c.4744A>T), 88431934(c.4726T>C), 88432089(c.4571T>C), 88432171(c.4489A>G), 88432254(c.4406A>T), 88432462(c.4198C>T), 88432512(c.4148A>C), 88432826(c.3834G>A), 88433164(c.3496A>G), 88433246(c.3414C>T), 88433424(c.3236G>T), 88433427(c.3233G>T), 88433953(c.2707T>C), 88434758(c.1902A>G), 88434809(c.1851C>A), 88434920(c.1740G>A), 88434997(c.1663A>T), 88435244(c.1416T>C), 88435324(c.1336T>G), 88435353(c.1307G>A), 88435476(c.1184T>C), 88435483(c.1177A>T), 88435670(c.990G>A), 88435745(c.915G>C), 88435827(c.*833C>T),
Insertions	+1kb 88458745 (c.-5778_-5773dupGTGTGT), 5'UTR CDS 3'UTR INTRON 88440160 (c.919+537dupA), 88441706 (c.739-829_739-828insG), 88442492 (c.739-1617_739-1615dupAGA), 88443573 (c.739-2696dupC), 88447063 (c.738+927dupG), 88450754 (c.173-128_173-127insG), 88451633 (c.67-185_67-184dupAC), 88455053 (c.-159+490dupT), -1kb
Deletions	+1kb 88456253 (c.-3281delA), 88456822 (c.-3851_-3850delGG), 88458104 (c.-5132delT), 88458654 (c.-5683_-5682delGG), 88458695 (c.-5729_-5723delCCCTGGG), 88460302 (c.-7337_-7330delATCCCATC), 5'UTR CDS 3'UTR INTRON 88439686 (c.919+1007_919+1011delATGGC), 88440418 (c.919+279delG), 88441569 (c.739-693_739-692delTA), 88442847 (c.739-1973_739-1970delGTGT), 88447197 (c.738+790_738+793delTTTT), 88449964 (c.414+22_414+23delTG), 88452704 (c.3+266delA), 88453241 (c.-158-113_-158-111delAGG), 88455210 (c.-159+333delA), -1kb 88433670 (c.2989delA), 88433819 (c.2839_2840delTT), 88435710 (c.948_*949delCA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	5
non-synonymous num	1
synonymous substitutions	88436972 (p.Arg525Arg), 88437056 (p.Gly497Gly), 88437867 (p.Pro410Pro), 88438518 (p.Ser321Ser), 88448117 (p.Ser204Ser),
non-synonymous substitutions	88437133 (p.Val472Ile),
B6 transcript (ENSMUST00000107531)	MIPWPASERKKTECAFKKKSNEELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGM LYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETAS EFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPA DSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEV SPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHV VMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRV PRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMA RSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATVYNGSLLLL PQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGAS MAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRD QHLQPSKDHRTSASDVDADNNHLGAEVA*
MSMv4 transcript	MIPWPASERKKTECAFKKKSNEELQDSLLLPILIDKVMDGKGQSPFDPVHKHTAVLVDGM LYSGTMNNFLGSEPILMRTLGSQPVLKTDIFLRWLHADASFVAAIPSTQVVYFFFEETAS EFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNIIRHAVLLPA DSPSVSRIYAVFTSQWQVGGTRSSAVCAFSLTDIERVFKGKYKELNKETSRWTTYRGSEV SPRPGSCSMGPSSDKALTFMKDHFLMDEHVVGTPLLVKSGVEYTRLAVESARGLDGSSHV VMYLGTSTGSLHKAVVPQDSSAYLVEEIQLSPDSEPVRNLQLAPAQGAVFAGFSGGIWRV PRANCSVYESCVDCVLARDPHCAWDPESRLCSLLSGSTKPWKQDMERGNPEWVCTRGPMA RSPRRQSPPQLIKEVLTVPNSILELPCPHLSALASYHWSHGRAKISEASATIYNGSLLLL PQDGVGGLYQCVATENGYSYPVVSYWVDSQDQPLALDPELAGVPRERVQVPLTRVGGGAS MAAQRSYWPHFLIVTVLLAIVLLGVLTLLLASPLGALRARGKVQGCGMLPPREKAPLSRD QHLQPSKDHRTSASDVDADNNHLGAEVA*
homology	99.84 (629 / 629)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Sema4a (ENSMUSG00000028064)
Transcript ID	ENSMUST00000107531


..........AGGAATGCTTTCAGTCTAGGAGCTGTAACTGGAAGGGTGGAGGACAGCCT
ACAGTGGGGACCATCCTGGCAGTGAGGATGGTGTTTACAGTGAAGATAGGGTATGTCCTG
GAGGTAGACCAGCTTGGGTCACTGTGCTCTTTAACCTGAAGTCAGCTGACCCGGGAGAGT
GGGCAGCAGCCCAACCACTCTTTATTGGCCTAGGAGCCCTTGGTTACTCATTAACCCTGC
GTTATGAGGTCTTCCTGGAACCTTTGGGGAGGAGGAACCAACCACCATGCCAGCTGGGTG
CTTCAGCTCCAAAGCGTATCCCAAGAAGCACGCGTTCAAATGGGGAATTTCTCCAATTTC
CCACTGAGACGTCAAATTACTAGGGCTTCCTCAGCAAAGTCATAGGGAAAAACCAAAAAA
CTAATACAAATGTAGGATTTTTATTTATTTTTTATTTTTTTGATACGGGGTTTCTCTGTA
TAGCCCTGGATGACCTGGAGCACACTCTGTAGATCAGGCTGGCCTCGAACTCAGAGATCT
GCCTGCCTCTGCCTCCCGAGTACTTGGATTAAAGGTATGCCTCGCCACCATGCCAGCTTT
AAACGTGTTATCTTTCAAGAATGTGGTCCTACTGGGTGTGGGAGGTCGGGAGGTCTCAGT
ATGTGGCAGTGGGGGAACCCCACAATGGGGTCAGAGAGAGAAGGAATAGGAGAGAGACGG
TGTCATACCGAGCTCTCTTGAGCAAGAGGAGTCTGCAGCTTGGGCTGGTTAGACTGGAAG
TGGTGTGCGGGAGAAACAAGGGCATCACTGAACTGGCCGGGAAGGAACTCTTAATTTCTG
GATAGACTAAGGAGGGAGGGAGGTGTGTCTCCTGCAAGGCCTTCAAGCCTCACCCCCACT
CCCACACTCCACCAGTCTCCCCGCCCTGATCCACCAACTTCCGCCCAAGCCAGCCAGGAT
CTGTCACAACTCGAGGTAGAAATTCTGGTTTCCCTGGCCTGAAACCCACA
CTGGCTCTGGCAGGATGGGTGCCTGGAGGGCCGCGCGCCCGTTCCAGCCAGGCTGAGCCTGCTTGCCTTGCCTGGACCCCCTTCTTTGCCTCGGATGGCACCCTGATTCAGGGTTTGAACACAGGACTTCTCAGTGTGGCTGGCTCAAGGGTAT
GTGAGATGAGGCGGGGGCGGGGGAG..........TCTCCTTGTCATTGCCTCCCAACAG
GAGACGGGCACAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGACTTTGACACGCTGCTCCTGAGTGACGATGGCAACACTCTCTATGTGGGGGCTCGAGAGGCCGTCCTGGCCTTGAATATCCAGAACCCAGGAATCCCAAGGCTGAGGAACATG
GTGAGGAGGCCAGGGGCCAGAGTCC..........TACCCCTTTCAACTCTCCACTTTAG
ATACCCTGGCCAGCCAGTGAGAGAAAAAAGACCGAATGTGCCTTTAAGAAGAAGAGCAATGAG
GTAAACGCAGGTGGGGGCAGAGGGT..........GCTCCCAGCCTCTTCCCCCCTCTAG
GAACTCCAAGATTCCCTCCTGTTGCCCATCTTGATAGACAAGGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCTGTTCACAAGCACACAGCTGTCTTGGTCG
GTGAGTGTGGGGCTTTCCTGACCCT..........TTCTCCCCCCTCTCCCTGGTCTTAG
ATGGGATGCTTTATTCCGGCACCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGATGCGGACACTGGGATCCCAGCCTGTTCTCAAGACTGACATCTTCTTACGCTGGCTGCACG
GTAAAAGTCCCTGACTCCCAGTCAA..........GAGCCTGTCTGTTCTGTCCCTGCAG
CGGATGCCTCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATTTCTTCTTTGAGGAGACAGCCAGCGAGTTTGACTTCTTTGAAGAGCTGTATATATCCAGGGTGGCTCAAGTCTGCAAG
GTCTGCCCTCATCCCCCAAGCTGCC..........GCCTTGACTCCATCCTTTCCCCTAG
AACGACGTGGGCGGTGAAAAGCTGCTGCAGAAGAAGTGGACCACCTTCCTCAAAGCCCAGTTGCTCTGCGCTCAGCCAGGGCAGCTGCCATTCAACATCATCCGCCACGCGGTCCTGCTGCCCGCCGATTCTCCCTCTGTTTCCCGCATCTACGCAGTCTTTACCTCCCAGTG
GTGAGCAGCAAGGCAGGGAAAAGGA..........GAATGTCTTCTCTGGCTGTCTTCAG
GCAGGTTGGCGGGACCAGGAGCTCGGCAGTCTGTGCCTTCTCTCTCACGGACATTGAGCGAGTCTTTAAAGGGAAGTACAAGGAGCTGAACAAGGAGACCTCCCGCTGGACCACTTACCGGGGCTCAGAGGTCAGCCCGAGGCCAGGCAGT
GTAAGTACCACCCACTCCTCCCAGC..........ACACTCTGCTTTCCTCCTCCTCTAG
TGCTCCATGGGCCCCTCCTCTGACAAAGCCTTGACCTTCATGAAGGACCATTTTCTGATGGATGAGCACGTGGTAGGAACACCCCTGCTGGTGAAGTCTGGTGTGGAGTACACACGGCTTGCTGTGGAGTCAGCTCGGGGCCTTGATGGGAGCAGCCATGTGGTCATGTATCTGGGTACCT
GTGAGTAGAGGCTTCCAGAATATAC..........TTCTACCTTGTCTCTGTCTCTGCAG
CCACGGGGTCCCTGCACAAGGCTGTGGTGCCTCAGGACAGCAGCGCTTATCTCGTGGAGGAGATTCAGCTGAGCCCTGACTCTGAGCCTGTTCGAAACCTGCAGCTGGCCCCCGCCCAG
GTGAGAAGGGACCTGAACAGAACAC..........TGACACCCTCCATCTCTTTGCCCAG
GGTGCAGTGTTTGCAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGTGTCTACGAGAGCTGTGTGGACTGTGTGCTTGCCAGGGACCCTCACTGTGCCTGGGACCCTGAATCAAGACTCTGCAGCCTTCTGTCTGGCTCTACCAA
GTGAGTGCTGACCCTGAATGGTGAC..........GAGTTTGCTTGCTTTGTCTTCTCAG
GCCTTGGAAGCAGGACATGGAACGCGGCAACCCAGAGTGGGTATGCACCCGTGGCCCCATGGCCAGGAGCCCCCGGCGTCAGAGCCCCCCTCAACTAA
GTGAGTGTGGGACTGGAGGAGGTAA..........ATGTCACCTCTTTTCTCTTCTCCAG
TTAAAGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGCTGCCCTGCCCCCACCTGTCAGCACTGGCCTCTTACCACTGGAGTCATGGCCGAGCCAAAATCTCAGAAGCCTCTGCTACCATCTACAATGGCTCCCTCTTGCTGCTGCCGCAGGATGGTGTCGGGGGCCTCTACCAGTGTGTGGCGACTGAGAACGGGTACTCATACCCTGTGGTCTCCTATTGGGTAGACAGCCAGGACCAGCCCCTGGCGCTGGACCCTGAGCTGGCGGGCGTTCCCCGCGAGCGTGTGCAGGTCCCGCTGACCAGGGTCGGAGGCGGAGCTTCCATGGCTGCCCAGCGGTCCTACTGGCCCCATTTTCTCATCGTTACCGTCCTCCTGGCCATCGTGCTCCTGGGAGTGCTCACTCTCCTCCTCGCTTCCCCACTGGGGGCGCTGCGGGCTCGGGGTAAGGTTCAGGGCTGTGGGATGCTGCCCCCCAGGGAAAAGGCTCCACTGAGCAGGGACCAGCACCTCCAGCCCTCCAAGGACCACAGGACCTCTGCCAGTGACGTAGATGCCGACAACAACCATCTGGGCGCCGAAGTGGCTTAAACAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTCCTGCTAACGTGTGTCACCTACAGCACCCAGTAGGTCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTACTTGTGCTGTGACAGGAAGAGCCAGGCAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGATGACAAACCTAAGCATCCGAGCAAGCTGGGGCTATTCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTTTCCTTTACCAGTCATGCCATACTGTTTGGGAAGTCATCTCTGAAGTCTAACCACCTTCCTTCTTGCTTCAGTTTGGACAGATTGTTATTATTGTCTCTGCCCTGGCTAGAATGGGGGGCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTCCTCCCTTTGTTTTGGGATTCAGAAAACTGCTTGTCACAGACAATTTATTTTTTATTAAAAAAGATATAAGCTTTAAAG
AAAGCTTATGGCGTGCTGTGCTGTTTTTCTTACGGCTAAGTTCCCACCTGTGTGGAGGAT
CAGGTCTGCCCTAGCCAGCCCTTCTCTGGTCTCCAGGCAGAGCTAGGACTGTGTGGACCA
GCCTCAGCAGTGCGTGCGAGACTCTCTGGCTGCCACACACCTGCTGTTCCCAGCACTCCC
ACGCTCATCGTGACTCCAGCTCAGCTCTGCCCCCAGCCGCAGTTTCTGGAGGTGCTCCAC
AGCCACCCCCACCCTGGCCTCATCCGTCTGTCTGTCTCCACACTTCCCCACACTGCCTTT
TCCTCTCTCTGCCAGACGCGGCAGCCTGCCTAACCTCTGTTCTCTAGTGTAATTCCCAGC
AGGGCCCCCCACTTCACTTAGCTGGTTCCCTCCTTCTGACTGCAGGTGCACACAGGCCAT
GCAAAACTGAACACAAAGGTTTAGGGGCATCTACCTGTGAGCCCAGCATTCAGGAGGCTG
AGGCACGAGAACCCAGAGCTGAAAACTAGCCTTGGCCAAATAATAAGACAGAGGCCAACC
TGGGCTACAAGAATGTCTCAAAACATCAAAACCAAAAAGCCAAAAACCTTCTCCATAACT
CTACCTATATATCCCGTACTTAGTTTCTCTTTCCTATGACCACTGAACAACGCCAGAGTC
CACTGTGGCCTCCCATTTCCCCCTCCCTGGCTCTCTTTGAGCCCCTGTGGTATCGTTCTC
CCCACTTTCTGCTCTGAGACCTCTTTAAGATTGACATTAAGTCTTTAACAACAGCTTAAC
TGTGACCTCTGCTCACAGCTACCTATTCCTCACCAACCTTCTACTATAGAGTTTTTAAAA
AGTTCTTAGAGCCAGTGAGATGGCTGGACAAGCAAAGGTGTCTGCCCCAAGCCCATTTGA
CCTGAGTTCAGTCCCTGGGACCCACACACTGGACTGAAACCTGAGCTCTACACATGTGAT
GTTGTACCTATATGTCCACACATGCACACATGAATGGAGG..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AGGAATGCTTTCAGTCTAGGAGCTGTAACTGGAAGGGTGGAGGACAGCCT ACAGTGGGGACCATCCTGGCAGTGAGGATGGTGTTTACAGTGAAGATAGGGTATGTCCTG GAGGTAGACCAGCTTGGGTCACTGTGCTCTTTAACCTGAAGTCAGCTGACCCGGGAGAGT GGGCAGCAGCCCAACCACTCTTTATTGGCCTAGGAGCCCTTGGTTACTCATTAACCCTGC GTTATGAGGTCTTCCTGGAACCTTTGGGGAGGAGGAACCAACCACCATGCCAGCTGGGTG CTTCAGCTCCAAAGCGTATCCCAAGAAGCACGCGTTCAAATGGGGAATTTCTCCAATTTC CCACTGAGACGTCAAATTACTAGGGCTTCCTCAGCAAAGTCATAGGGAAAAACCAAAAAA CTAATACAAATGTAGGATTTTTATTTATTTTTTATTTTTTTGATACGGGGTTTCTCTGTA TAGCCCTGGATGACCTGGAGCACACTCTGTAGATCAGGCTGGCCTCGAACTCAGAGATCT GCCTGCCTCTGCCTCCCGAGTACTTGGATTAAAGGTATGCCTCGCCACCATGCCAGCTTT AAACGTGTTATCTTTCAAGAATGTGGTCCTACTGGGTGTGGGAGGTCGGGAGGTCTCAGT ATGTGGCAGTGGGGGAACCCCACAATGGGGTCAGAGAGAGAAGGAATAGGAGAGAGACGG TGTCATACCGAGCTCTCTTGAGCAAGAGGAGTCTGCAGCTTGGGCTGGTTAGACTGGAAG TGGTGTGCGGGAGAAACAAGGGCATCACTGAACTGGCCGGGAAGGAACTCTTAATTTCTG GATAGACTAAGGAGGGAGGGAGGTGTGTCTCCTGCAAGGCCTTCAAGCCTCACCCCCACT CCCACACTCCACCAGTCTCCCCGCCCTGATCCACCAACTTCCGCCCAAGCCAGCCAGGAT CTGTCACAACTCGAGGTAGAAATTCTGGTTTCCCTGGCCTGAAACCCACA
1	EXON 1	88,455,544	88,455,697	-	-	154	CTGGCTCTGGCAGGATGGGTGCCTGGAGGGCCGCGCGCCCGTTCCAGCCAGGCTGAGCCT GCTTGCCTTGCCTGGACCCCCTTCTTTGCCTCGGATGGCACCCTGATTCAGGGTTTGAAC ACAGGACTTCTCAGTGTGGCTGGCTCAAGGGTAT
	INTRON 1 - 2	88,453,132	88,455,543			2,412	GTGAGATGAGGCGGGGGCGGGGGAG..........TCTCCTTGTCATTGCCTCCCAACAG
2	EXON 2	88,452,971	88,453,131	-	0	161	GAGACGGGCACAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGACTTTGACACGC TGCTCCTGAGTGACGATGGCAACACTCTCTATGTGGGGGCTCGAGAGGCCGTCCTGGCCT TGAATATCCAGAACCCAGGAATCCCAAGGCTGAGGAACATG
	INTRON 2 - 3	88,452,083	88,452,970			888	GTGAGGAGGCCAGGGGCCAGAGTCC..........TACCCCTTTCAACTCTCCACTTTAG
3	EXON 3	88,452,020	88,452,082	0	0	63	ATACCCTGGCCAGCCAGTGAGAGAAAAAAGACCGAATGTGCCTTTAAGAAGAAGAGCAAT GAG
	INTRON 3 - 4	88,451,451	88,452,019			569	GTAAACGCAGGTGGGGGCAGAGGGT..........GCTCCCAGCCTCTTCCCCCCTCTAG
4	EXON 4	88,451,345	88,451,450	0	1	106	GAACTCCAAGATTCCCTCCTGTTGCCCATCTTGATAGACAAGGTCATGGACGGGAAGGGC CAAAGCCCCTTTGACCCTGTTCACAAGCACACAGCTGTCTTGGTCG
	INTRON 4 - 5	88,450,628	88,451,344			717	GTGAGTGTGGGGCTTTCCTGACCCT..........TTCTCCCCCCTCTCCCTGGTCTTAG
5	EXON 5	88,450,511	88,450,627	1	1	117	ATGGGATGCTTTATTCCGGCACCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGATGC GGACACTGGGATCCCAGCCTGTTCTCAAGACTGACATCTTCTTACGCTGGCTGCACG
	INTRON 5 - 6	88,450,113	88,450,510			398	GTAAAAGTCCCTGACTCCCAGTCAA..........GAGCCTGTCTGTTCTGTCCCTGCAG
6	EXON 6	88,449,988	88,450,112	1	0	125	CGGATGCCTCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATTTCTTCTTTGAGG AGACAGCCAGCGAGTTTGACTTCTTTGAAGAGCTGTATATATCCAGGGTGGCTCAAGTCT GCAAG
	INTRON 6 - 7	88,449,853	88,449,987			135	GTCTGCCCTCATCCCCCAAGCTGCC..........GCCTTGACTCCATCCTTTCCCCTAG
7	EXON 7	88,449,680	88,449,852	0	2	173	AACGACGTGGGCGGTGAAAAGCTGCTGCAGAAGAAGTGGACCACCTTCCTCAAAGCCCAG TTGCTCTGCGCTCAGCCAGGGCAGCTGCCATTCAACATCATCCGCCACGCGGTCCTGCTG CCCGCCGATTCTCCCTCTGTTTCCCGCATCTACGCAGTCTTTACCTCCCAGTG
	INTRON 7 - 8	88,448,142	88,449,679			1,538	GTGAGCAGCAAGGCAGGGAAAAGGA..........GAATGTCTTCTCTGGCTGTCTTCAG
8	EXON 8	88,447,991	88,448,141	2	0	151	GCAGGTTGGCGGGACCAGGAGCTCGGCAGTCTGTGCCTTCTCTCTCACGGACATTGAGCG AGTCTTTAAAGGGAAGTACAAGGAGCTGAACAAGGAGACCTCCCGCTGGACCACTTACCG GGGCTCAGAGGTCAGCCCGAGGCCAGGCAGT
	INTRON 8 - 9	88,440,879	88,447,990			7,112	GTAAGTACCACCCACTCCTCCCAGC..........ACACTCTGCTTTCCTCCTCCTCTAG
9	EXON 9	88,440,698	88,440,878	0	1	181	TGCTCCATGGGCCCCTCCTCTGACAAAGCCTTGACCTTCATGAAGGACCATTTTCTGATG GATGAGCACGTGGTAGGAACACCCCTGCTGGTGAAGTCTGGTGTGGAGTACACACGGCTT GCTGTGGAGTCAGCTCGGGGCCTTGATGGGAGCAGCCATGTGGTCATGTATCTGGGTACC T
	INTRON 9 - 10	88,438,562	88,440,697			2,136	GTGAGTAGAGGCTTCCAGAATATAC..........TTCTACCTTGTCTCTGTCTCTGCAG
10	EXON 10	88,438,443	88,438,561	1	0	119	CCACGGGGTCCCTGCACAAGGCTGTGGTGCCTCAGGACAGCAGCGCTTATCTCGTGGAGG AGATTCAGCTGAGCCCTGACTCTGAGCCTGTTCGAAACCTGCAGCTGGCCCCCGCCCAG
	INTRON 10 - 11	88,438,341	88,438,442			102	GTGAGAAGGGACCTGAACAGAACAC..........TGACACCCTCCATCTCTTTGCCCAG
11	EXON 11	88,438,183	88,438,340	0	2	158	GGTGCAGTGTTTGCAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGT GTCTACGAGAGCTGTGTGGACTGTGTGCTTGCCAGGGACCCTCACTGTGCCTGGGACCCT GAATCAAGACTCTGCAGCCTTCTGTCTGGCTCTACCAA
	INTRON 11 - 12	88,437,901	88,438,182			282	GTGAGTGCTGACCCTGAATGGTGAC..........GAGTTTGCTTGCTTTGTCTTCTCAG
12	EXON 12	88,437,803	88,437,900	2	1	98	GCCTTGGAAGCAGGACATGGAACGCGGCAACCCAGAGTGGGTATGCACCCGTGGCCCCAT GGCCAGGAGCCCCCGGCGTCAGAGCCCCCCTCAACTAA
	INTRON 12 - 13	88,437,253	88,437,802			550	GTGAGTGTGGGACTGGAGGAGGTAA..........ATGTCACCTCTTTTCTCTTCTCCAG
13	EXON 13	88,435,962	88,437,252	1	-	1,291	TTAAAGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGCTGCCCTGCCCCCACCTGTCAG CACTGGCCTCTTACCACTGGAGTCATGGCCGAGCCAAAATCTCAGAAGCCTCTGCTACCA TCTACAATGGCTCCCTCTTGCTGCTGCCGCAGGATGGTGTCGGGGGCCTCTACCAGTGTG TGGCGACTGAGAACGGGTACTCATACCCTGTGGTCTCCTATTGGGTAGACAGCCAGGACC AGCCCCTGGCGCTGGACCCTGAGCTGGCGGGCGTTCCCCGCGAGCGTGTGCAGGTCCCGC TGACCAGGGTCGGAGGCGGAGCTTCCATGGCTGCCCAGCGGTCCTACTGGCCCCATTTTC TCATCGTTACCGTCCTCCTGGCCATCGTGCTCCTGGGAGTGCTCACTCTCCTCCTCGCTT CCCCACTGGGGGCGCTGCGGGCTCGGGGTAAGGTTCAGGGCTGTGGGATGCTGCCCCCCA GGGAAAAGGCTCCACTGAGCAGGGACCAGCACCTCCAGCCCTCCAAGGACCACAGGACCT CTGCCAGTGACGTAGATGCCGACAACAACCATCTGGGCGCCGAAGTGGCTTAAACAGGGA CACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATGCCAGGCACAGTG CCACTCTGACCAGGGTAGGAGGCTCTCCTGCTAACGTGTGTCACCTACAGCACCCAGTAG GTCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTACTTG TGCTGTGACAGGAAGAGCCAGGCAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCT GTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGATGACA AACCTAAGCATCCGAGCAAGCTGGGGCTATTCCTGCAAACTCCATCCTGAACGCTGTCAC TCTAGAAGCAGCTGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGA GTTGGCCCCTTGTGTTTCCTTTACCAGTCATGCCATACTGTTTGGGAAGTCATCTCTGAA GTCTAACCACCTTCCTTCTTGCTTCAGTTTGGACAGATTGTTATTATTGTCTCTGCCCTG GCTAGAATGGGGGGCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGAC CTCTTCCTTCCTCCTCCCTTTGTTTTGGGATTCAGAAAACTGCTTGTCACAGACAATTTA TTTTTTATTAAAAAAGATATAAGCTTTAAAG
	3' upstream sequence						AAAGCTTATGGCGTGCTGTGCTGTTTTTCTTACGGCTAAGTTCCCACCTGTGTGGAGGAT CAGGTCTGCCCTAGCCAGCCCTTCTCTGGTCTCCAGGCAGAGCTAGGACTGTGTGGACCA GCCTCAGCAGTGCGTGCGAGACTCTCTGGCTGCCACACACCTGCTGTTCCCAGCACTCCC ACGCTCATCGTGACTCCAGCTCAGCTCTGCCCCCAGCCGCAGTTTCTGGAGGTGCTCCAC AGCCACCCCCACCCTGGCCTCATCCGTCTGTCTGTCTCCACACTTCCCCACACTGCCTTT TCCTCTCTCTGCCAGACGCGGCAGCCTGCCTAACCTCTGTTCTCTAGTGTAATTCCCAGC AGGGCCCCCCACTTCACTTAGCTGGTTCCCTCCTTCTGACTGCAGGTGCACACAGGCCAT GCAAAACTGAACACAAAGGTTTAGGGGCATCTACCTGTGAGCCCAGCATTCAGGAGGCTG AGGCACGAGAACCCAGAGCTGAAAACTAGCCTTGGCCAAATAATAAGACAGAGGCCAACC TGGGCTACAAGAATGTCTCAAAACATCAAAACCAAAAAGCCAAAAACCTTCTCCATAACT CTACCTATATATCCCGTACTTAGTTTCTCTTTCCTATGACCACTGAACAACGCCAGAGTC CACTGTGGCCTCCCATTTCCCCCTCCCTGGCTCTCTTTGAGCCCCTGTGGTATCGTTCTC CCCACTTTCTGCTCTGAGACCTCTTTAAGATTGACATTAAGTCTTTAACAACAGCTTAAC TGTGACCTCTGCTCACAGCTACCTATTCCTCACCAACCTTCTACTATAGAGTTTTTAAAA AGTTCTTAGAGCCAGTGAGATGGCTGGACAAGCAAAGGTGTCTGCCCCAAGCCCATTTGA CCTGAGTTCAGTCCCTGGGACCCACACACTGGACTGAAACCTGAGCTCTACACATGTGAT GTTGTACCTATATGTCCACACATGCACACATGAATGGAGG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Sema4a (ENSMUSG00000028064)
Transcript ID	ENSMUST00000107531

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 629 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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