top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Tmed9 (ENSMUSG00000058569)
Cross Reference
CCDS CCDS49277.1
EMBL AK010259, AK152496, BC004691, ...show all
Fantom 2400003B06, I830076O03
GO GO:0000139, GO:0000139, GO:0005515, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Tmed9-201
protein_id AAH04691.1, AAH49282.1, AAH58801.1, ...show all
RefSeq_mRNA NM_026211.3
RefSeq_peptide NP_080487
UCSC uc007qrs.1
UniParc UPI00000E87E9
Uniprot/SPTREMBL Q6PDC2
Uniprot/SWISSPROT Q99KF1
Definition protein_id:ENSMUSP00000105531
translation:
MAAVRGVRVVGSSPGLLLGRGMRAFLLLLWLAARGSALYFHIGETEKKCFIEEIPDETMV
IGNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQI
CLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQK
EQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV

Chromosome 13
Length
Position(start - end)
3,815
55,593,174 - 55,596,990
Orient to Chromosome plus
Link Location : (13:55593174-55596990)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmed9 (ENSMUSG00000058569)
Transcript ID ENSMUST00000109905
Reports
substitution
cSNPs6
Insertion14
Deletion12
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num3
synonymous substitutions 55594818 (p.Ala133Ala), 55596879 (p.Thr199Thr), 55596933 (p.Ile217Ile),
non-synonymous substitutions 55596904 (p.Ile208Val), 55596925 (p.Val215Leu), 55596942 (p.Trp220Cys),
B6 transcript
(ENSMUST00000109905)
MAAVRGVRVVGSSPGLLLGRGMRAFLLLLWLAARGSALYFHIGETEKKCFIEEIPDETMV
IGNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQI
CLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQK
EQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV*
MSMv4 transcript
MAAVRGVRVVGSSPGLLLGRGMRAFLLLLWLAARGSALYFHIGETEKKCFIEEIPDETMV
IGNYRTQLYDKQREEYQPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQI
CLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQK
EQNYQRWREERFRQTSESTNQRVLWWSVLQTLILLAIGVCQMRHLKSFFEAKKLV*
homology98.73 (236 / 236)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmed9 (ENSMUSG00000058569)
Transcript ID ENSMUST00000109905
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCTGGCCATGGCGACGTGAAGAGAGAGGGGAAGGGAATAAAGAGCAAAGG
GAAAGAGGCAAGAGAGTAAGAGAGTAAGAGAGAGAGGAGGGGCCAAGCAGCCCCTTTTAT
AGAGCCAGGACTACCTGACTGTTGCCAGGTAACTGTGGGGCGGAGCATACTTGGCTTCTG
CCAGGAACTGTGGGGGTGGAGTTTAGAGAGATACCAACATGGTCTACCTATCAAGGTCAG
AGCCAGGCAGGGCTACATAGTTAGACTGTCTCAAGAAAAAAAAAAAAAAAGATGCCACAA
TGTATCTACTTAGTACAGACAAAGGTATTGGTGAACAACAAACACAAGACATACATAAAC
AACACAATGATAGTTATAAATCTTATTAATGATTAAATTAAATGTAAGTGGCATAAACCC
TACAATTAAAAGGTAGAACTTGGCAAGATGGCGTTCAAAAGGCATGATCTAATTGCATGT
TGCCCCTAAGAGGTTCATTTTGGAATATAAAGTAATGATATGAGTGGGAAAGAATAGACA
GTGCAAATAGTAACCGAGAGTAGGATGGCTGAACATAGTGTTGTGTGCACCTTATATCCC
AACCTTAAGAGTCAGAAAGATCCCTACAAATTTCAGGCCGGGGGGAGTTTGCATTGTAAA
TTCCAGTGAGGCAAAGCAACATAGCAAGACCCTGTGTCAAATCAAATAAAAGTAAAGAGG
GATGGGGAGAGGATGGGCAAGAGGGAGAGTTGTATTACTATTGGGTGAAACAGGTTCGAA
CCTTGCCTCCGCTTATATCTTGCGCAGGCTGACAACTATTATCAGTCATCTCGCTATTTG
GCTAAACCGAAGAAAATCCTTCCATTTTGGAGACCCCAGTCCTCAGCTTGCAGAAACCAG
CCCCAATCAGGTACTGCCGCGCGGAGGCGTGGTGTATCTAGGGACTTGTAGTCCATGCGG
CGGAACTCGCAGTCCCGGCAGGCACTGCGGTGGCCTCCGCTGGGCTACGT
1 EXON 1 55,593,135 55,593,357 - 1 223
GGCTCGGCGGTCTGCGCCTGCGCAGGCAGGTGGGGCAAGATGGCTGCGGTGCGAGGCGTG
CGGGTTGTCGGAAGCTCACCGGGTCTCTTGCTGGGGAGAGGGATGCGGGCCTTCCTGCTA
CTGCTGTGGCTTGCAGCCCGCGGAAGCGCGCTGTATTTCCACATCGGAGAAACAGAAAAG
AAGTGCTTCATTGAGGAGATTCCGGACGAGACCATGGTCATCG
INTRON 1 - 2 55,593,358 55,593,500 143
GTGCGGGGGCGCAGGGAAGCGTTTG..........TCTTCCTTTTTCCGCCTGTCTCCAG
2 EXON 2 55,593,501 55,593,601 1 0 101
GAAATTACCGGACGCAGCTGTATGACAAACAGCGGGAGGAGTACCAGCCAGCCACCCCTG
GGCTTGGCATGTTCGTAGAGGTAAAAGACCCCGAGGACAAG
INTRON 2 - 3 55,593,602 55,594,704 1,103
GTAAGCTGGCCCTTACCCGCTCCGG..........CTGAAATCCTCCCTGTTATCTATAG
3 EXON 3 55,594,705 55,594,830 0 0 126
GTCATCCTGGCCCGGCAGTATGGCTCTGAGGGCAGGTTCACCTTCACCTCCCACACCCCT
GGTGAGCACCAGATCTGTCTTCACTCAAATTCCACCAAGTTCTCCCTCTTTGCTGGAGGG
ATGCTG
INTRON 3 - 4 55,594,831 55,595,467 637
GTAAGTAGGTCCATGGGTGACCAGA..........TCTCTTCTCACTCTTCCCTCCCCAG
4 EXON 4 55,595,468 55,595,614 0 0 147
AGGGTTCACCTTGACATCCAAGTGGGCGAACATGCAAACGACTATGCAGAAATTGCTGCC
AAGGACAAGCTGAGCGAGCTGCAGCTGAGGGTGCGACAGCTGGTGGAGCAAGTGGAGCAG
ATCCAAAAGGAGCAGAACTACCAGCGG
INTRON 4 - 5 55,595,615 55,596,840 1,226
GTGAGTGCTGGGTGAGTGCCGGCTC..........AGCCTTGCCGCTTACTTCCCAACAG
5 EXON 5 55,596,841 55,597,663 0 - 823
TGGCGAGAAGAGCGCTTCAGACAAACCAGCGAAAGCACTAACCAGCGAGTGCTATGGTGG
TCCGTCCTGCAGACTCTCATCCTCCTGGCCATCGGCGTCTGCCAGATGCGGCACCTCAAG
AGCTTTTTTGAAGCCAAGAAGTTGGTGTAGCAGCTGTCCCAAGCCTCACAGGCGATCTTT
CTTCCAGGCTGTGGGAAGTAGGAGGAGGACTGGTTTTCAGCCGCAGATGTTCTGGAGGAG
AGAGGGACTGTAAGCGTGTCCCCGTTCCTCAGGCTCAGGTGGAGGACAGCAGCCTGGCTG
GCTAATGCTGAGCCAGCAGTGGGACAAGCCCTCCCACCTCCACTCCTGGACCTTTTGCAG
TAATCACTCAGGGGCTGGCGATGCCCTTGGTGTCTCAGAAGCTCAGTGTTACTGATCAGG
GATATGAGGTTGCTGTCTGGGGTAGGTTTTGGGAGGGAAGTGGGTGGGGCAGCAAGCTGA
TTTTCCTTCTGTCTTCCTTTGTTAATGTGGGATTTTGAGCAGGTCAGGGTGTATCAGTGA
CTCCTTGCTATTCCAGAAACTTTGCTTTTCTTGCCTTTGGCTTAGAACCAGCCTGCTTAT
ATAGGGTGTGTTTGCTGCGTGTCAGTTTAAGGGTATGGAGGGGTTGCAGTGCACAAAAGG
GGCCCAGAGGTTGATTTTAGTTTGTTACAATTGTCCTTTCTGGGGCTTGAACAACTGGTA
TCAAACCAAGCAGAGACTTTGGTGCTGGTTGGAAACAGAGCCTACAGAGTCTTAGTTACT
GAGTTTATTTTCAATGAATGTGGGTTTGTTACATTGGTTTCCC
3' upstream sequence
AATTAAAAAGAAAAAAGAAAAAAAGGAAGAAAAACTGTTCGTGGTTACTCTTTTTTTTTT
TTAAAGATTTATTTATTTATTATATATAAGTACACTGTAGCTGTCCTCAGGCACACCAGA
AAAGGGCATCAGATATCATTACAGATGGTTGTGAGCCACCATGCGGCTGCTGGGATTTGA
ACTCAGGACCTTCATAATAGCAGTCAGTGCTCCTAACTGCTGAGCCATCTCTCCAACCCT
GTGGTTACTCTTGGTGGGTGTGATGATACTTGGACTTAAGAGAATGGAACAAGGCCAGAC
ATGATGGTGCACAACTTTAATAGCAGCACTCAGGAGGCAGAGACAGGTAGATCTCTGTAA
GTTCAAGGCCAGCCTGGTCTATGTAGTGAATCCAGGACAGCCAAGGCTATTACACAGAGA
AGCCATGTCTGGAAAAAACAAAAAGAGGGTGGGTGGGAATAGTAACTTCCAGAGGGCACA
AGGCCTCACACTCCAGGGTAGTCTCCACCTGTGAACATCACGATCTCCATCCTTGCCATG
GTTTCTTGTAGCGGGCAGGTGCTGACGGGTTTGTCAAAACCATTTGACATTGCTCACCAA
GAGTGCCAAGTGTCAACATGACAAATAACGGAACACTGATTTAAAAGCAGTTCATTTGGG
TTTGTTTTGTTTTTTTCGAGACAGGGTTTCTCTGTACAGCCTTGGCTGTCCTGGAACTCA
CTTTGTAAACCAGGCTGGCCTCAAACTCGGAAATCTGCCTGCCTCTGCCTTCTGAGTGCT
GGGATTAAAGGTGTGTGCCACCACCGCCTGGCTAATTTGGGTTTTTATGTAAAATTTAGT
TTCTTGAGTTTGAGGTCTAACACTAGAGCAACAGGTCACCTGACTGTCTTATCGCCTGAT
GGCCCTGCCTAACTGGTCTCTGCAGGAGGTCAATCCTGCCTTTAAGATCTGCCACATCAG
GCTGGAGAGATGACTCAGTGGTTAAGAGCACTGACTGATC..........

Sequence Detail Report

Gene Symbol (Gene ID) Tmed9 (ENSMUSG00000058569)
Transcript ID ENSMUST00000109905
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 236 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information