MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Sema4d (ENSMUSG00000021451)

Cross Reference

CCDS	CCDS26514.1
EMBL	BC049780, CH466546, U69535
GO	GO:0000122, GO:0001934, GO:0004872, ...show all
goslim_goa	GO:0003674, GO:0004871, GO:0005575, ...show all
MGI_trans_name	Sema4d-003
OTTP	OTTMUSP00000022965
OTTT	OTTMUST00000049523
protein_id	AAC52964.1, AAH49780.2, EDL41105.1, ...show all
Reactome	R-MMU-1266738, R-MMU-373755, R-MMU-400685, ...show all
RefSeq_peptide_predicted	XP_006516948.1, XP_006516950.1, XP_006516951.1

UCSC	uc007qmn.2
UniParc	UPI0000021BF6
Uniprot/SWISSPROT	O09126
Vega_transcript	OTTMUST00000049523, Sema4d-003
Vega_translation	214462, OTTMUSP00000022965

Definition

protein_id:ENSMUSP00000105666
translation:

MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSALLMSEDKD
TLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIRVLQPLSS
TSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGELYSGTSYN
FLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYFFFTEVSV
EYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNILQDVFVLR
APGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHTKWVRYNG
PVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNY
TQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPVLTLLLSS
KKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLHQEEASSR
GWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGELKAASPK
YGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTPPSPTSED
AQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVINTVPQLH
SEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLGKKTPKSD
FSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQRIDELSA
RDKPFDVKCELKFADSDADGD

Chromosome

Length
Position(start - end)

22,719
51,702,609 - 51,725,329

Orient to Chromosome

minus

Link

Location : (13:51702609-51725329)
/

Detail Map

name	Gm15440 (ENSMUSG00000051107)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm15440 note : predicted gene 15440 [Source:MGI Symbol;Acc:MGI:3642353]

name	Sema4d (ENSMUSG00000021451)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Sema4d note : sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:MGI Symbol;Acc:MGI:109244]

name	Gm15440 (ENSMUSG00000051107)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000110042

name	Sema4d (ENSMUSG00000021451)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000110040

name	Sema4d (ENSMUSG00000021451)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021900

name	Sema4d (ENSMUSG00000021451)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000110039

name	Sema4d (ENSMUSG00000021451) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26514.1 Uniprot/SWISSPROT:O09126 RefSeq_peptide:NP_001268809 RefSeq_mRNA:NM_001281880.1 RefSeq_mRNA_predicted:XM_006516886.2 RefSeq_peptide_predicted:XP_006516948.1 RefSeq_peptide_predicted:XP_006516949.1 RefSeq_peptide_predicted:XP_006516950.1 RefSeq_peptide_predicted:XP_006516951.1 Vega_transcript:OTTMUST00000049521 Vega_transcript:Sema4d-001 UCSC:uc007qmp.2 EMBL:BC049780 EMBL:CH466546 EMBL:U69535 GO:GO:0000122 GO:GO:0001934 GO:GO:0004872 GO:GO:0004888 GO:GO:0005102 GO:GO:0005615 GO:GO:0005887 GO:GO:0007162 GO:GO:0008360 GO:GO:0010693 GO:GO:0014068 GO:GO:0016020 GO:GO:0030215 GO:GO:0030335 GO:GO:0031344 GO:GO:0043547 GO:GO:0043931 GO:GO:0045668 GO:GO:0048672 GO:GO:0048814 GO:GO:0050731 GO:GO:0050732 GO:GO:0050772 GO:GO:0070486 GO:GO:0071526 GO:GO:1900220 MGI_trans_name:Sema4d-001 Vega_translation:214460 Vega_translation:OTTMUSP00000022963 goslim_goa:GO:0003674 goslim_goa:GO:0004871 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005615 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0021700 goslim_goa:GO:0030154 goslim_goa:GO:0048856 protein_id:AAC52964.1 protein_id:AAH49780.2 protein_id:EDL41105.1 protein_id:EDL41106.1 protein_id:EDL41107.1 OTTP:OTTMUSP00000022963 OTTT:OTTMUST00000049521 Reactome:R-MMU-1266738 Reactome:R-MMU-373755 Reactome:R-MMU-400685 Reactome:R-MMU-416550 Reactome:R-MMU-416572 Reactome:R-MMU-416700 Reactome:R-MMU-422475 UniParc:UPI0000021BF6
definition	note : transcript_id=ENSMUST00000110040 protein_id : ENSMUSP00000105667 translation : MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSALLMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIRVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNILQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHTKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPVLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLHQEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGELKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTPPSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVINTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLGKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQRIDELSARDKPFDVKCELKFADSDADGD

name	Sema4d (ENSMUSG00000021451) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26514.1 Uniprot/SWISSPROT:O09126 RefSeq_peptide:NP_038688 RefSeq_mRNA:NM_013660.4 RefSeq_mRNA_predicted:XM_006516883.2 RefSeq_mRNA_predicted:XM_006516884.2 RefSeq_peptide_predicted:XP_006516946.1 RefSeq_peptide_predicted:XP_006516947.1 RefSeq_peptide_predicted:XP_006516948.1 RefSeq_peptide_predicted:XP_006516950.1 RefSeq_peptide_predicted:XP_006516951.1 Vega_transcript:OTTMUST00000049522 Vega_transcript:Sema4d-002 UCSC:uc007qmo.2 EMBL:BC049780 EMBL:CH466546 EMBL:U69535 GO:GO:0000122 GO:GO:0000122 GO:GO:0001934 GO:GO:0001934 GO:GO:0004872 GO:GO:0004872 GO:GO:0004888 GO:GO:0004888 GO:GO:0005102 GO:GO:0005102 GO:GO:0005615 GO:GO:0005887 GO:GO:0005887 GO:GO:0007162 GO:GO:0007162 GO:GO:0008360 GO:GO:0008360 GO:GO:0010693 GO:GO:0010693 GO:GO:0014068 GO:GO:0014068 GO:GO:0016020 GO:GO:0030215 GO:GO:0030335 GO:GO:0031344 GO:GO:0031344 GO:GO:0043547 GO:GO:0043931 GO:GO:0043931 GO:GO:0045668 GO:GO:0048672 GO:GO:0048672 GO:GO:0048814 GO:GO:0048814 GO:GO:0050731 GO:GO:0050732 GO:GO:0050772 GO:GO:0070486 GO:GO:0070486 GO:GO:0071526 GO:GO:0071526 GO:GO:1900220 MGI_trans_name:Sema4d-002 Vega_translation:214461 Vega_translation:OTTMUSP00000022964 goslim_goa:GO:0003674 goslim_goa:GO:0004871 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005615 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0021700 goslim_goa:GO:0030154 goslim_goa:GO:0048856 protein_id:AAC52964.1 protein_id:AAH49780.2 protein_id:EDL41105.1 protein_id:EDL41106.1 protein_id:EDL41107.1 OTTP:OTTMUSP00000022964 OTTT:OTTMUST00000049522 Reactome:R-MMU-1266738 Reactome:R-MMU-373755 Reactome:R-MMU-400685 Reactome:R-MMU-416550 Reactome:R-MMU-416572 Reactome:R-MMU-416700 Reactome:R-MMU-422475 UniParc:UPI0000021BF6
definition	note : transcript_id=ENSMUST00000021900 protein_id : ENSMUSP00000021900 translation : MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSALLMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIRVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNILQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHTKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPVLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLHQEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGELKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTPPSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVINTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLGKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQRIDELSARDKPFDVKCELKFADSDADGD

name	Sema4d (ENSMUSG00000021451) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26514.1 Uniprot/SWISSPROT:O09126 RefSeq_peptide_predicted:XP_006516948.1 RefSeq_peptide_predicted:XP_006516950.1 RefSeq_peptide_predicted:XP_006516951.1 Vega_transcript:OTTMUST00000049523 Vega_transcript:Sema4d-003 UCSC:uc007qmn.2 EMBL:BC049780 EMBL:CH466546 EMBL:U69535 GO:GO:0000122 GO:GO:0001934 GO:GO:0004872 GO:GO:0004888 GO:GO:0005102 GO:GO:0005615 GO:GO:0005887 GO:GO:0007162 GO:GO:0008360 GO:GO:0010693 GO:GO:0014068 GO:GO:0016020 GO:GO:0030215 GO:GO:0030335 GO:GO:0031344 GO:GO:0043547 GO:GO:0043931 GO:GO:0045668 GO:GO:0048672 GO:GO:0048814 GO:GO:0050731 GO:GO:0050732 GO:GO:0050772 GO:GO:0070486 GO:GO:0071526 GO:GO:1900220 MGI_trans_name:Sema4d-003 Vega_translation:214462 Vega_translation:OTTMUSP00000022965 goslim_goa:GO:0003674 goslim_goa:GO:0004871 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005615 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007155 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0021700 goslim_goa:GO:0030154 goslim_goa:GO:0048856 protein_id:AAC52964.1 protein_id:AAH49780.2 protein_id:EDL41105.1 protein_id:EDL41106.1 protein_id:EDL41107.1 OTTP:OTTMUSP00000022965 OTTT:OTTMUST00000049523 Reactome:R-MMU-1266738 Reactome:R-MMU-373755 Reactome:R-MMU-400685 Reactome:R-MMU-416550 Reactome:R-MMU-416572 Reactome:R-MMU-416700 Reactome:R-MMU-422475 UniParc:UPI0000021BF6
definition	note : transcript_id=ENSMUST00000110039 protein_id : ENSMUSP00000105666 translation : MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSALLMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIRVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNILQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHTKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPVLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLHQEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGELKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTPPSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVINTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLGKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQRIDELSARDKPFDVKCELKFADSDADGD

name
type	misc_feature
link
xref
definition	note : contig AC126547.4 30663..181823(1)

name	Sema4d (ENSMUSG00000021451)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049524 Vega_transcript:OTTMUST00000049524 MGI_trans_name:Sema4d-004 OTTT:OTTMUST00000049524
definition	note : retained_intron note : transcript_id=ENSMUST00000125511

name	Sema4d (ENSMUSG00000021451)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049525 Vega_transcript:OTTMUST00000049525 MGI_trans_name:Sema4d-005 OTTT:OTTMUST00000049525
definition	note : processed_transcript note : transcript_id=ENSMUST00000139865

name	Sema4d (ENSMUSG00000021451)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049526 Vega_transcript:OTTMUST00000049526 MGI_trans_name:Sema4d-006 OTTT:OTTMUST00000049526
definition	note : processed_transcript note : transcript_id=ENSMUST00000138228

name	Sema4d (ENSMUSG00000021451)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049531 Vega_transcript:OTTMUST00000049531 MGI_trans_name:Sema4d-011 OTTT:OTTMUST00000049531
definition	note : processed_transcript note : transcript_id=ENSMUST00000150662

name	Sema4d (ENSMUSG00000021451)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049530 Vega_transcript:OTTMUST00000049530 MGI_trans_name:Sema4d-010 OTTT:OTTMUST00000049530
definition	note : processed_transcript note : transcript_id=ENSMUST00000139018

name	Sema4d (ENSMUSG00000021451)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049528 Vega_transcript:OTTMUST00000049528 MGI_trans_name:Sema4d-008 OTTT:OTTMUST00000049528
definition	note : processed_transcript note : transcript_id=ENSMUST00000146238

name	Sema4d (ENSMUSG00000021451)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049529 Vega_transcript:OTTMUST00000049529 MGI_trans_name:Sema4d-009 OTTT:OTTMUST00000049529
definition	note : processed_transcript note : transcript_id=ENSMUST00000146922

name	Sema4d (ENSMUSG00000021451)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049527 Vega_transcript:OTTMUST00000049527 MGI_trans_name:Sema4d-007 OTTT:OTTMUST00000049527
definition	note : processed_transcript note : transcript_id=ENSMUST00000143396

name	Sema4d (ENSMUSG00000021451)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049532 Vega_transcript:OTTMUST00000049532 MGI_trans_name:Sema4d-012 OTTT:OTTMUST00000049532
definition	note : processed_transcript note : transcript_id=ENSMUST00000139858

name	Sema4d (ENSMUSG00000021451)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049533 Vega_transcript:OTTMUST00000049533 MGI_trans_name:Sema4d-013 OTTT:OTTMUST00000049533
definition	note : processed_transcript note : transcript_id=ENSMUST00000155896

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Sema4d (ENSMUSG00000021451)
Transcript ID	ENSMUST00000110039

Reports
substitution
cSNPs	11
Insertion	21
Deletion	34
SNPs	+1kb 51735157(c.-9828C>T), 51735644(c.-10315C>G), 51735672(c.-10343G>A), 51736085(c.-10756T>C), 51736144(c.-10815C>T), 51736161(c.-10832C>T), 51736191(c.-10862T>C), 51736213(c.-10884A>G), 51736255(c.-10926C>T), 51736391(c.-11062T>C), 51736399(c.-11070G>A), 51737007(c.-11678T>C), 51737063(c.-11734C>T), 51737226(c.-11897A>G), 51737595(c.-12266G>A), 51737636(c.-12307C>A), 51738141(c.-12812A>G), 51738142(c.-12813C>T), 51738208(c.-12879G>A), 51738442(c.-13113T>C), 51738616(c.-13287G>A), 51738750(c.-13421T>G), 51739116(c.-13787A>G), 51739352(c.-14023T>G), 51739569(c.-14240C>T), 51739599(c.-14270C>T), 51739676(c.-14347T>C), 51739759(c.-14430C>T), 5'UTR 51725359(c.-30C>T), 51734701(c.-408G>A), CDS 51702741(c.2454G>A), 51703020(c.2175G>A), 51703341(c.1854C>T), 51704972(c.1644T>C), 51708968(c.1353A>C), 51710124(c.1118G>A), 51713765(c.549C>T), 51713801(c.513C>T), 51723594(c.201G>A), 51723603(c.192A>G), 51725273(c.57A>G), 3'UTR 51701412(c.1197C>T), 51701413(c.1196T>A), 51701618(c.991T>C), 51701713(c.896G>T), 51701772(c.837G>C), 51701773(c.836T>C), 51701886(c.723T>G), 51702080(c.529C>T), 51702201(c.408A>T), 51702204(c.405A>T), INTRON 51703864(c.1664-333G>A), 51703958(c.1664-427A>G), 51703993(c.1664-462G>A), 51704203(c.1664-672C>T), 51704656(c.1663+297G>T), 51704742(c.1663+211G>T), 51705007(c.1620-11C>T), 51705366(c.1447-121T>C), 51705571(c.1447-326C>T), 51705655(c.1447-410G>A), 51705707(c.1447-462C>G), 51705893(c.1447-648G>T), 51705903(c.1447-658A>C), 51705913(c.1447-668A>G), 51705915(c.1447-670G>T), 51706059(c.1447-814T>C), 51706258(c.1447-1013A>G), 51706267(c.1447-1022G>A), 51706331(c.1447-1086T>C), 51706348(c.1447-1103A>G), 51706350(c.1447-1105G>A), 51706353(c.1447-1108T>C), 51706787(c.1447-1542G>C), 51707414(c.1446+1461T>C), 51707652(c.1446+1223C>T), 51708056(c.1446+819T>C), 51708137(c.1446+738A>G), 51708264(c.1446+611G>T), 51708341(c.1446+534C>A), 51708567(c.1446+308T>C), 51710411(c.1108-277G>A), 51710759(c.1107+441G>A), 51710976(c.1107+224C>T), 51711164(c.1107+36T>G), 51711667(c.775-43T>C), 51711742(c.775-118G>A), 51711759(c.775-135A>G), 51711962(c.775-338A>T), 51712252(c.774+427C>T), 51712851(c.623-21T>C), 51713445(c.622+247T>C), 51713599(c.622+93T>G), 51714113(c.509-308C>A), 51714289(c.509-484A>C), 51714626(c.508+168G>A), 51714903(c.415-16T>A), 51715104(c.415-217A>G), 51715120(c.415-233G>A), 51715221(c.415-334G>A), 51715301(c.415-414G>A), 51715433(c.415-546C>T), 51715577(c.415-690G>C), 51715654(c.415-767C>G), 51715699(c.415-812G>A), 51715849(c.415-962G>A), 51716077(c.415-1190A>T), 51716299(c.415-1412A>G), 51716440(c.415-1553T>C), 51716449(c.415-1562G>C), 51716462(c.415-1575T>G), 51716515(c.415-1628G>A), 51716837(c.415-1950A>G), 51716881(c.415-1994T>A), 51716882(c.415-1995A>T), 51717955(c.414+2551T>C), 51718195(c.414+2311A>T), 51718325(c.414+2181C>T), 51718378(c.414+2128A>C), 51719059(c.414+1447C>G), 51719153(c.414+1353T>G), 51719271(c.414+1235A>G), 51719336(c.414+1170A>C), 51719756(c.414+750G>C), 51719811(c.414+695A>G), 51719910(c.414+596A>G), 51720037(c.414+469A>C), 51720047(c.414+459G>A), 51720048(c.414+458T>C), 51720837(c.316-233C>T), 51720845(c.316-241C>G), 51720951(c.316-347C>T), 51721276(c.316-672G>C), 51721308(c.316-704T>C), 51721310(c.316-706C>T), 51721316(c.316-712C>G), 51721454(c.316-850C>T), 51721642(c.315+676A>G), 51721678(c.315+640G>A), 51721718(c.315+600G>A), 51721737(c.315+581T>C), 51721844(c.315+474G>A), 51721967(c.315+351A>G), 51722001(c.315+317T>C), 51722035(c.315+283G>A), 51722074(c.315+244T>C), 51722120(c.315+198T>A), 51722144(c.315+174C>A), 51722186(c.315+132T>C), 51722288(c.315+30G>A), 51722304(c.315+14C>A), 51722608(c.253-228C>T), 51722611(c.253-231A>G), 51722639(c.253-259C>G), 51722640(c.253-260C>T), 51722667(c.253-287G>C), 51722670(c.253-290G>A), 51722674(c.253-294A>G), 51723425(c.252+118G>A), 51723429(c.252+114G>A), 51723522(c.252+21T>G), 51723944(c.107-256C>G), 51724022(c.107-334T>C), 51724033(c.107-345C>G), 51724034(c.107-346T>C), 51724057(c.107-369G>A), 51724076(c.107-388G>A), 51724084(c.107-396C>T), 51724250(c.107-562C>T), 51724423(c.107-735A>C), 51724564(c.106+660A>G), 51724788(c.106+436T>C), 51724789(c.106+435G>A), 51724799(c.106+425T>A), 51724888(c.106+336T>C), 51724890(c.106+334T>C), 51724977(c.106+247T>C), 51725005(c.106+219C>A), 51725705(c.-213-163C>T), 51725820(c.-213-278C>T), 51726416(c.-213-874T>G), 51726457(c.-213-915A>G), 51726551(c.-213-1009A>G), 51727208(c.-213-1666A>G), 51727217(c.-213-1675C>T), 51727432(c.-213-1890C>G), 51727453(c.-213-1911T>C), 51727902(c.-213-2360A>T), 51727916(c.-213-2374G>A), 51728159(c.-213-2617C>A), 51728198(c.-213-2656G>A), 51728342(c.-213-2800C>T), 51728623(c.-213-3081G>T), 51728725(c.-213-3183G>C), 51728732(c.-213-3190C>T), 51728737(c.-213-3195C>T), 51728790(c.-213-3248A>T), 51728845(c.-213-3303G>A), 51728879(c.-213-3337G>T), 51728967(c.-213-3425T>C), 51728983(c.-213-3441G>A), 51728984(c.-213-3442A>G), 51728998(c.-213-3456G>C), 51729202(c.-213-3660A>T), 51729258(c.-213-3716T>C), 51729259(c.-213-3717T>A), 51729488(c.-213-3946C>T), 51729553(c.-213-4011G>A), 51729624(c.-213-4082C>G), 51729691(c.-213-4149C>T), 51729769(c.-213-4227C>T), 51729856(c.-213-4314G>A), 51729990(c.-213-4448C>A), 51730087(c.-214+4420C>T), 51730201(c.-214+4306G>A), 51730202(c.-214+4305T>C), 51730500(c.-214+4007T>C), 51730779(c.-214+3728A>G), 51731120(c.-214+3387G>A), 51731124(c.-214+3383T>C), 51731126(c.-214+3381A>G), 51731210(c.-214+3297T>A), 51731256(c.-214+3251T>G), 51731520(c.-214+2987C>T), 51731698(c.-214+2809C>T), 51731890(c.-214+2617T>C), 51731995(c.-214+2512A>G), 51732005(c.-214+2502T>C), 51732107(c.-214+2400C>T), 51732138(c.-214+2369C>T), 51732153(c.-214+2354C>T), 51732161(c.-214+2346G>C), 51732294(c.-214+2213C>G), 51732703(c.-214+1804T>C), 51732714(c.-214+1793A>G), 51732977(c.-214+1530A>G), 51733044(c.-214+1463G>A), 51733717(c.-214+790T>G), 51734060(c.-214+447C>T), 51734364(c.-214+143A>G), 51734385(c.-214+122G>A), 51734439(c.-214+68G>T), 51734496(c.-214+11C>T), -1kb 51696589(c.6020G>C), 51696606(c.6003C>T), 51696643(c.5966A>G), 51696715(c.5894C>T), 51696747(c.5862G>C), 51697072(c.5537G>A), 51697104(c.5505C>T), 51697580(c.5029G>A), 51697600(c.5009G>A), 51698214(c.4395T>C), 51698335(c.4274G>T), 51698528(c.4081T>C), 51698763(c.3846G>A), 51698767(c.3842G>A), 51698797(c.3812A>G), 51698862(c.3747G>C), 51698870(c.3739A>G), 51699009(c.3600A>G), 51699244(c.3365T>C), 51699300(c.3309A>T), 51699595(c.3014T>C), 51699615(c.2994G>A), 51699657(c.2952C>T), 51699699(c.2910T>A), 51699736(c.2873T>C), 51699761(c.2848C>T), 51699913(c.2696C>T), 51700469(c.2140A>T), 51700487(c.2122T>C), 51700492(c.2117G>A), 51700531(c.2078A>G), 51700573(c.2036A>G), 51700687(c.1922C>A), 51700689(c.1920G>T), 51700702(c.*1907A>C),
Insertions	+1kb 51735876 (c.-10548dupA), 51737587 (c.-12259dupG), 51738357 (c.-13029_-13028insG), 5'UTR CDS 3'UTR 51702068 (c.539_540dupTT), INTRON 51706549 (c.1447-1305_1447-1304insCGG), 51707587 (c.1446+1285_1446+1287dupAAA), 51710432 (c.1108-300_1108-299dupGT), 51717858 (c.414+2647_414+2648insG), 51718043 (c.414+2462dupA), 51721928 (c.315+389_315+390insGG), 51722869 (c.253-490_253-489insCGACA), 51722994 (c.252+547_252+548dupAA), 51728968 (c.-213-3427_-213-3426insC), 51730164 (c.-214+4342_-214+4343insAA), 51730296 (c.-214+4210_-214+4211insTCGA), 51730506 (c.-214+4000dupG), 51730682 (c.-214+3823_-214+3824dupGT), 51731591 (c.-214+2914_-214+2915dupCT), 51732380 (c.-214+2126dupC), -1kb 51696800 (c.5808dupA), 51699923 (c.2685_*2686insTAC),
Deletions	+1kb 51734837 (c.-9511_-9509delTTT), 51736718 (c.-11394_-11390delAAAAA), 5'UTR CDS 3'UTR 51701396 (c.1210_1212delACC), INTRON 51705530 (c.1447-286delG), 51705543 (c.1447-302_1447-299delAAAA), 51706290 (c.1447-1047_1447-1046delAG), 51708346 (c.1446+528delA), 51708595 (c.1446+279delA), 51710540 (c.1108-407delC), 51710549 (c.1108-416delC), 51710551 (c.1108-422_1108-418delTTCTC), 51710600 (c.1108-468_1108-467delAA), 51710609 (c.1108-478_1108-476delAAA), 51713217 (c.623-389_623-388delTT), 51715090 (c.415-207_415-204delGCAA), 51715627 (c.415-742_415-741delAG), 51716655 (c.415-1774_415-1769delTTTTTT), 51716802 (c.415-1921_415-1916delTCCCCC), 51717932 (c.414+2572_414+2573delGT), 51721233 (c.316-632_316-630delCAA), 51723786 (c.107-107_107-99delCCTGGGGTG), 51724280 (c.107-594_107-593delAG), 51724326 (c.107-639delA), 51724523 (c.106+699_106+700delCA), 51724789 (c.106+431_106+434delTGAA), 51726416 (c.-213-875delC), 51728173 (c.-213-2633_-213-2632delAC), 51729096 (c.-213-3559_-213-3555delTTTTT), 51729238 (c.-213-3698_-213-3697delGA), 51729445 (c.-213-3904delC), 51733404 (c.-214+1100_-214+1102delCTC), 51734159 (c.-214+346_-214+347delGT), -1kb 51698778 (c.3829_3830delCG), 51699376 (c.3227_3232delGTGAGA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	10
non-synonymous num	1
synonymous substitutions	51702741 (p.Gln818Gln), 51703020 (p.Val725Val), 51703341 (p.Asp618Asp), 51704972 (p.Gly548Gly), 51708968 (p.Ala451Ala), 51713765 (p.Gly183Gly), 51713801 (p.Gly171Gly), 51723594 (p.Arg67Arg), 51723603 (p.Val64Val), 51725273 (p.Arg19Arg),
non-synonymous substitutions	51710124 (p.Ser373Asn),
B6 transcript (ENSMUST00000110039)	MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSALLMSEDKD TLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIRVLQPLSS TSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGELYSGTSYN FLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYFFFTEVSV EYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNILQDVFVLR APGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHTKWVRYNG PVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNY TQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPVLTLLLSS KKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLHQEEASSR GWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGELKAASPK YGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTPPSPTSED AQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVINTVPQLH SEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLGKKTPKSD FSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQRIDELSA RDKPFDVKCELKFADSDADGD*
MSMv4 transcript	MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSALLMSEDKD TLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIRVLQPLSS TSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGELYSGTSYN FLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYFFFTEVSV EYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNILQDVFVLR APGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHTKWVRYNG PVPTPRPGACIDNEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNY TQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPVLTLLLSS KKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLHQEEASSR GWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGELKAASPK YGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTPPSPTSED AQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVINTVPQLH SEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLGKKTPKSD FSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQRIDELSA RDKPFDVKCELKFADSDADGD*
homology	99.88 (862 / 862)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Sema4d (ENSMUSG00000021451)
Transcript ID	ENSMUST00000110039


..........AATCAACCAAGACTCGGGATGAGCACCCATTTAATTCTTATGACTATGTT
GTCTGTGGGTTTCCCTTGGTTTCCTTGGGAAGATGAAGGGGACACAGATCTGAAATTAGG
ACTGATGAAGTGGCTTGGCCAGCAAAAGGAGCTTGCTGCCCATCTCAATGACCTGAATTG
GATCCCCGGGTCCCACAAGGTAGGAGAGAACCTGCTCCTACAAGTTGCCCTTGGACTTCC
ACATGTGCTGTAATGTGAATGTGCCCACACATGGACATATGCAATAAATAAAGTCTTATT
TACTTTTTTAAACATCTGAAAAGAATAATACGACTTGGTTAGACTGGTTTCGTTTTTGTG
GCTGGTTCTCATGTAGTCCAGGCTGGTCTTGAATCCACTCTGCAGCCACAGATGATCTTG
AATTCTGGATGGAGGGCTGGGATTACAGGCTCACACCACCGTGCCCAGTTTATGCGGTGC
TGAGGATAGGTCCCAGGGCCTTTTGCATGCCAGGCAAGCTTTCTAACTGAGCCTAGTGAT
AAGTTTTCTAATGTATGGACTCTGCTCTCTGCGATGGGGCAGTATGCTTAGACATGGCTG
TGGTGGCTGAGTGTGGTGACACACACCTGAAATCTCCAGCACTGGGAAGACTGAGGCAGG
AGGATATCGAGTTTGAAGCTCGTACGGACTACTTAGCCTGACCAAAATTGCTTTTATTTG
TCTGTCTGTTTGTTTGTTTATATTTTAATGTGAATTGGTGTTTTGCCTGTATATATGTCT
ATGTGAGGTTGTCAGATCTTGAGCTATAGACAGTGGTGAGCCACCCTGTGGGTACTAGGA
ATTGAACTCAGGTCTTCTGGAAAAACAGCCAGTAGTAGTAGCCAGTGCTCTAAACCTCTC
CAAGCCACCTCTCTGGCCTGATTTTTTTTTTTTTTTAAAGGAGAAGGAAAGAAAAGAGAA
GTGGTTATTTGTGGTGTCTGTGGTGAGGTGAGCAAGCAAGCGCACCAGCT
GACCCAGGCTTCCCCTTTGCTGGCTGCCCAGCACCTCACTTCTGGTGCAGTGAACAAGCCCCACAGGAACTGGATAGAGAGGTCATCTGCTTGGGGCCCTAAGGAGTTTGTATTTAGTGCCTGTCTGAAACCCAAGCGCCCCGTGAGGGTGGAGGACCCAGGGGCTTGACTCTTAGTCTCTCATTACTTTCAGAGATGTCTTCCTGAAGCTTCCATTCTAAAGGTGCCAGGAACAACCCCAGAGACTCACGGCACAG
GTAAATCATTTCGTGTATGATTTCT..........GTCTCGTCCTTTCCTTCTTTTGCAG
GTCAGACGGGAACACCGGCAGCCTTGGCATGACGTCGTGAAGGTGGCCATTGCTAACCTGACATGTGGGGACTCAGGAACCCCACCCCTTATGGGCTCCAGTCTGTGCTGCTGGCCCCAGCTCTGGGGCTCTAAGAGGTCCTTGCTGCTACCCCACAGCAGCCTGCTGCCATCCATGTGTGCCTGTTGCTGAAGGCCTCGGTGGCCCCTGCCCATGAGGATGTGTGCCCCCGTTAGGGGGCTGTTCTTGGCCCTGGTGGTAGTGTTGAGGACCGCGGTGGCATTTGCACCTGTGCCTCGGCTCACCTGGGAACATGGAG
GTAAGTGAGTGTGAGCCATGAGTGA..........TTCCTTCCCCCCTCTGCTGCCACAG
AGGTAGGTCTGGTGCAGTTTCACAAGCCAGGCATCTTTAACTACTCGGCCTTGCTGATGAGTGAGGACAAAGACACTCTGTATGTGGGCGCCCGAGAAGCAGTCTTTGCAGTGAATGCGCTGAACATCTCTGAGAAGCAACATGAG
GTAGGTTCCATGGCCTCCCAGCCAT..........GCTCTGACACGTTCCTCCCTCACAG
GTATATTGGAAGGTCTCTGAAGACAAAAAATCCAAGTGTGCAGAGAAGGGGAAATCAAAGCAG
GTAATTGACCGCAAGTACAAAGAGC..........TGTTAATGGGGTGTTTCCCTTGCAG
ACGGAATGCCTAAACTACATTCGAGTACTACAGCCACTAAGCAGCACTTCCCTCTATGTGTGTGGGACCAATGCGTTCCAGCCCACCTGTGACCACCTG
GTAAGACCACAACATATCCCTGTGT..........ATGTTTTCTATTTATTCCATTGTAG
AACTTGACATCCTTCAAGTTTCTGGGGAAAAGTGAAGATGGCAAAGGAAGATGCCCCTTCGACCCCGCCCACAGCTACACATCAGTCATGGTTG
GTGAGTCCTGCGTCTGAGGCTCTTT..........CTCTACTCCCTCTCCTCCACCACAG
GGGGTGAGCTCTACTCTGGGACGTCCTATAATTTCTTGGGTAGTGAACCCATCATCTCTCGAAACTCTTCCCACAGTCCCTTGAGGACGGAGTATGCCATCCCGTGGCTGAACG
GTAAGTGTGTGCTGCCAGCCTTGTG..........ACCACCCTGTGATGCCACCCCACAG
AGCCTAGCTTCGTCTTTGCTGACGTGATCCAGAAAAGCCCAGATGGTCCGGAGGGTGAAGATGACAAGGTCTACTTCTTTTTTACGGAGGTATCCGTGGAGTACGAATTCGTCTTCAAGTTGATGATCCCGCGAGTTGCCAGGGTGTGCAAG
GTGGGTGCTGTCTCCCTGTTCCCAC..........CCATGTGCTGTCTCTGGAATTCCAG
GGCGACCAGGGCGGCCTGCGGACTTTGCAAAAAAAGTGGACCTCCTTCCTAAAGGCCAGGCTGATCTGCTCCAAGCCAGACAGTGGCCTGGTCTTCAACATACTTCAGGATGTGTTTGTGCTGAGGGCCCCGGGCCTCAAGGAGCCTGTGTTCTATGCGGTCTTCACCCCACAGCT
GTGAGTTCACTTGTGAGTCCCTTGG..........CACTCTCACGGATTCCCCTCCACAG
GAACAATGTGGGTCTGTCAGCGGTGTGCGCCTACACACTGGCCACGGTGGAGGCAGTCTTCTCCCGTGGAAAGTACATGCAGAGTGCCACAGTGGAGCAGTCTCACACCAAGTGGGTGCGCTACAATGGCCCAGTGCCCACTCCCCGACCTGGAGCG
GTAAGCAGGGTCTCGAGCTCTGGGG..........TGACCGCGGTGCTTTTACCCCACAG
TGTATCGACAATGAGGCCCGGGCAGCCAACTACACCAGCTCCTTGAATCTCCCAGACAAAACACTGCAGTTTGTAAAAGACCACCCTTTGATGGATGACTCAGTGACCCCGATAGACAACAGACCCAAGCTGATCAAAAAAGATGTAAACTACACCCAGATAGTGGTAGACAGGACCCAGGCCCTGGATGGGACTTTCTACGACGTCATGTTCATCAGCACAG
GTGGGTTCCTTGGTAAGATTGGGAA..........GCTCACCTGTGTTCTGACCTTGCAG
ACCGGGGAGCTCTGCATAAAGCCGTCATCCTCACAAAAGAGGTGCATGTCATCGAGGAGACCCAACTCTTCCGGGACTCTGAACCGGTCCTAACTCTGCTGCTATCGTCAAAGAAG
GTAATGTGGGTTTGGTTGGTTGGTT..........CTTGCCATCCGTCTCTCATACACAG
GGGAGGAAGTTTGTCTATGCAGGCTCCAACTCTGGAGTGGTCCAAGCGCCCCTGGCATTCTGCGAAAAGCACGGTAGCTGTGAAGACTGTGTGTTAGCACGGGACCCCTACTGTGCCTGGAGCCCAGCCATCAAGGCCTGTGTTACCCTGCACCAGGAAGAGGCCTCCAGCAG
GTATGCCTAAGGATGGGGCTGTGTG..........GTAATGTGCGCCTGTTGTCTTCTAG
GGGCTGGATTCAGGACATGAGCGGCGACACATCCTCATGCCTGG
GTGAGTGGATCTCCTTTGCTTCCCA..........GAGCACGTTTATTTTGATGTTCCAG
ATAAGAGTAAAGAAAGTTTCAACCAGCATTTTTTCAAGCACGGCGGCACAGCGGAACTCAAATGTTTCCAAAAGTCCAACCTAGCCCGGGTGGTATGGAAGTTCCAGAATGGCGAGTTGAAGGCCGCAAGTCCCAAGTACGGCTTTGTGGGCAGGAAGCACCTGCTCATCTTCAACCTGTCGGACGGAGATAGCGGCGTGTACCAGTGCCTGTCAGAGGAAAGGGTGAGGAATAAAACGGTCTCCCAGCTGCTGGCCAAGCACGTTCTGGAAGTGAAGATGGTACCTCGGACCCCCCCCTCACCTACCTCAGAGGATGCTCAGACAGAAGGTAGTAAGATCACATCCAAAATGCCGGTTGCATCTACCCAGGGGTCCTCTCCCCCTACCCCGGCTCTGTGGGCAACCTCCCCCAGAGCCGCCACCCTACCTCCCAAGTCCTCCTCCGGCACATCCTGTGAACCAAAGATGGTCATCAACACGGTCCCCCAGCTCCACTCAGAGAAGACGGTATATCTCAAGTCCAGTGACAACCGCCTGCTCATGTCTCTCCTCCTCTTCATCTTTGTCCTCTTCCTCTGCCTCTTTTCCTACAACTGCTACAAGGGCTACCTGCCCGGACAGTGCTTAAAATTCCGCTCAGCCCTGCTGCTTGGAAAGAAAACACCCAAGTCAGACTTCTCTGACCTGGAGCAGAGTGTGAAGGAGACACTGGTCGAGCCTGGGAGCTTCTCCCAGCAGAACGGCGACCACCCCAAGCCAGCCCTGGATACGGGCTATGAAACGGAGCAAGACACCATCACCAGCAAAGTCCCCACGGATCGTGAGGACTCGCAACGGATCGATGAACTCTCTGCCCGGGACAAACCGTTTGATGTCAAGTGTGAACTGAAGTTTGCAGATTCGGATGCTGACGGGGACTGAGGCCAGCGTGTCCCAGCCCATGCCCCTCTGTCTTCGTGGAGAGTGTTGTGTTGAGCCCATTCAGTAGCCGAGTCTTGTCACTCTGTGCCAGCCTCAGTCCTGTGTCCCTTTTTCTCTTGGGTTGAGCCTGTGGCTCATCCCCTTTGTCCTTTTGGGAAGCAAGTATCTATTCCAGTCTCAAGTCCTGCAGTTGCTGGAGCGCTTACGCACCTGAGCCCTTTGTGTCCTGGGGGAGAGATGGCCACCTCCGTGGGCTGCGAAGAGCCACCCCTTCCTCTTCCGATTCTCCTAGCAGCCACTCAGAGATAATTTAATTCCAGATTGGAAACGCCCTTTTAGTTTATCAGATTGGTAACTTACATCCTGCTGCCCAGATGGCACGGACAGTTTTCTTTCACTTAATTTTTTTTTTTTTTTTAAGGATTTTCGCTCCTATTGTGTTGATGTCTTAGGTCATTTTCTTTTTTTCTTTCTCTTTTTTTATTACCAGAGGAGATGTTTTAATATTCATGAGAAGAGGAACATTTTCTAGATTTTTTTGTTGTTATATATTGAGATATAAAATATGGCTATGTTGCTTAAGATTCTCAGGGATAGACTTATTTTTGTTAACTTCATTCTTTCCTGCTGTTAGGAACATAGGCCTAAAATTGTCTCTTGAGTTTGCTCACCCTTTTGTTTTGGTAGGGTTTTTTTGTTGTTGCTGTTATTGTTTCTAGTTTGTAATCTTATTCATTTTGAAGGATTTTTCTTTCTGAACTTTTTAAATTTTTATATTTTCCTGCCATACATCTACAAAGTGGGTTTTGAGTGAGGGCAGGTGGCCCAGTGGCTTCCGGTGGCGACTGAGCTGGTCCCACGAGGGGAGGAGGGTTTATATACCCCATGACCCTGCTGCTTCTTGGCGCCTCCTGCCCATGAGGATCACATCCTGTCTCTCCTTGCTTCCATCTCTCATCACTGCCCTTGGACTTCCGCCTTGACTGTCCACGAAAGACAGAAATGGGTTGGGTAGTTGGGCTCCCAACCTCGGATGGTGACCGCAACATCCCGTGTGGGCGGCCGGCCGCTCCTGCAGCCCGACTCTCCTGCCAGTGTCTTTCAGGATGTCAACGGGTGGTACGATTCTGGCATTTGTTTCTCGCTCACCGTGTGTGGAACACTCATTCCATGTAGAGGGTGACGAACTCTGGATATCCCCCCACCCCCACCCCGTGCCGTGTAGACACTCATCTTCTGCATGACATGATCTACCATTCGGTGTAAACATTTGTGTTTATAAGATTTACTTTGTTTTTATTTTTCTACTTGGAACTGTACACATTTGAAAAGTACCCAAATAAACCAGAAGCTTTATCG
TTGACTGGGCCAGCCTTTGCCTTAGTGTGGAGGCTGGGGGCGGTGGGGTGTCCTCCTGTC
CCTCTGTGACGGCCCTGGGTGGGGGTTGGTCCTGGGATCTTGTCTGTTCTCATCCCATGT
GTCCGGTTTCTTGCTTTACCTTCTCCGTCATGGGAATGGTTCTGACGACTTCTTCCTCAG
TGCCTTCTTTTGTGTCCTCTGTCTCACAGCCTCATCTCCTAAGTCCTTCCCTCCTCCTGG
CTCCTCTCTATCCTGTCTGGGCCCTGACTCATCTTCTCCCAGAAGCCCTCGGCCGGCCTT
GGCCTCGGGGCCCAACAGCCGTAAGCAGGTCACCTTACTGCCACCCTTCTTGAGTGACCA
GGCGCAGAAGGTGCAGGCGCTGGGGACCTTCTACCTCTTCTGCCAGGCCACAGGTGAGTT
GAGGGGCCTGAGTGTCCATGGCTGTCCCCTCGCTCTGCCCTTGCTCCTAGCTGTGCCTGA
GGTTCAGCTGTCTGTGCTGATCCCGGGATCAACTGTCAACCGTGCAACGCTGTTGCTAGG
GCTGCCGCAGGGGTCATCCATCATCTCGCCGTAAAGGTACAGGTGTTGGGTCTTCTGAGC
ATGTAGGCTGCTGTGCCCAATGTTGTATGTCAGAAAACTGGACCTACAGGGCAGCAGAGA
ACCAGATGAGGCCACGGTTTGCTAACCTGGGTTAGGTAGGGAATTCAAGGCCAACCCCGG
GCAACTTATGAGAACCCTGTCTTGGAGTTTTAAAATAAGAATCAGGATACATCCAGTGGT
TGAATGTGTGACTAATGTGTACAAGGTCCCAGCCACAGCATAAATAAATACATAAATGCG
TGAAGTCCATAAGGTGGAGGTTTTCTCCCTCTGCTGGAGACTATCACATAAGGACATGGA
CTCTTGAAAGATGGTAGTTTACCCAAACCATTCTTTAGCTCAGAGATACCCATAGCCCCA
TCTTTCCCTGTGGGCTTTGGCCTCTGCACAGAAGTGAGGA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AATCAACCAAGACTCGGGATGAGCACCCATTTAATTCTTATGACTATGTT GTCTGTGGGTTTCCCTTGGTTTCCTTGGGAAGATGAAGGGGACACAGATCTGAAATTAGG ACTGATGAAGTGGCTTGGCCAGCAAAAGGAGCTTGCTGCCCATCTCAATGACCTGAATTG GATCCCCGGGTCCCACAAGGTAGGAGAGAACCTGCTCCTACAAGTTGCCCTTGGACTTCC ACATGTGCTGTAATGTGAATGTGCCCACACATGGACATATGCAATAAATAAAGTCTTATT TACTTTTTTAAACATCTGAAAAGAATAATACGACTTGGTTAGACTGGTTTCGTTTTTGTG GCTGGTTCTCATGTAGTCCAGGCTGGTCTTGAATCCACTCTGCAGCCACAGATGATCTTG AATTCTGGATGGAGGGCTGGGATTACAGGCTCACACCACCGTGCCCAGTTTATGCGGTGC TGAGGATAGGTCCCAGGGCCTTTTGCATGCCAGGCAAGCTTTCTAACTGAGCCTAGTGAT AAGTTTTCTAATGTATGGACTCTGCTCTCTGCGATGGGGCAGTATGCTTAGACATGGCTG TGGTGGCTGAGTGTGGTGACACACACCTGAAATCTCCAGCACTGGGAAGACTGAGGCAGG AGGATATCGAGTTTGAAGCTCGTACGGACTACTTAGCCTGACCAAAATTGCTTTTATTTG TCTGTCTGTTTGTTTGTTTATATTTTAATGTGAATTGGTGTTTTGCCTGTATATATGTCT ATGTGAGGTTGTCAGATCTTGAGCTATAGACAGTGGTGAGCCACCCTGTGGGTACTAGGA ATTGAACTCAGGTCTTCTGGAAAAACAGCCAGTAGTAGTAGCCAGTGCTCTAAACCTCTC CAAGCCACCTCTCTGGCCTGATTTTTTTTTTTTTTTAAAGGAGAAGGAAAGAAAAGAGAA GTGGTTATTTGTGGTGTCTGTGGTGAGGTGAGCAAGCAAGCGCACCAGCT
1	EXON 1	51,734,507	51,734,763	-	-	257	GACCCAGGCTTCCCCTTTGCTGGCTGCCCAGCACCTCACTTCTGGTGCAGTGAACAAGCC CCACAGGAACTGGATAGAGAGGTCATCTGCTTGGGGCCCTAAGGAGTTTGTATTTAGTGC CTGTCTGAAACCCAAGCGCCCCGTGAGGGTGGAGGACCCAGGGGCTTGACTCTTAGTCTC TCATTACTTTCAGAGATGTCTTCCTGAAGCTTCCATTCTAAAGGTGCCAGGAACAACCCC AGAGACTCACGGCACAG
	INTRON 1 - 2	51,725,543	51,734,506			8,964	GTAAATCATTTCGTGTATGATTTCT..........GTCTCGTCCTTTCCTTCTTTTGCAG
2	EXON 2	51,725,224	51,725,542	-	1	319	GTCAGACGGGAACACCGGCAGCCTTGGCATGACGTCGTGAAGGTGGCCATTGCTAACCTG ACATGTGGGGACTCAGGAACCCCACCCCTTATGGGCTCCAGTCTGTGCTGCTGGCCCCAG CTCTGGGGCTCTAAGAGGTCCTTGCTGCTACCCCACAGCAGCCTGCTGCCATCCATGTGT GCCTGTTGCTGAAGGCCTCGGTGGCCCCTGCCCATGAGGATGTGTGCCCCCGTTAGGGGG CTGTTCTTGGCCCTGGTGGTAGTGTTGAGGACCGCGGTGGCATTTGCACCTGTGCCTCGG CTCACCTGGGAACATGGAG
	INTRON 2 - 3	51,723,689	51,725,223			1,535	GTAAGTGAGTGTGAGCCATGAGTGA..........TTCCTTCCCCCCTCTGCTGCCACAG
3	EXON 3	51,723,543	51,723,688	1	0	146	AGGTAGGTCTGGTGCAGTTTCACAAGCCAGGCATCTTTAACTACTCGGCCTTGCTGATGA GTGAGGACAAAGACACTCTGTATGTGGGCGCCCGAGAAGCAGTCTTTGCAGTGAATGCGC TGAACATCTCTGAGAAGCAACATGAG
	INTRON 3 - 4	51,722,381	51,723,542			1,162	GTAGGTTCCATGGCCTCCCAGCCAT..........GCTCTGACACGTTCCTCCCTCACAG
4	EXON 4	51,722,318	51,722,380	0	0	63	GTATATTGGAAGGTCTCTGAAGACAAAAAATCCAAGTGTGCAGAGAAGGGGAAATCAAAG CAG
	INTRON 4 - 5	51,720,605	51,722,317			1,713	GTAATTGACCGCAAGTACAAAGAGC..........TGTTAATGGGGTGTTTCCCTTGCAG
5	EXON 5	51,720,506	51,720,604	0	0	99	ACGGAATGCCTAAACTACATTCGAGTACTACAGCCACTAAGCAGCACTTCCCTCTATGTG TGTGGGACCAATGCGTTCCAGCCCACCTGTGACCACCTG
	INTRON 5 - 6	51,714,888	51,720,505			5,618	GTAAGACCACAACATATCCCTGTGT..........ATGTTTTCTATTTATTCCATTGTAG
6	EXON 6	51,714,794	51,714,887	0	1	94	AACTTGACATCCTTCAAGTTTCTGGGGAAAAGTGAAGATGGCAAAGGAAGATGCCCCTTC GACCCCGCCCACAGCTACACATCAGTCATGGTTG
	INTRON 6 - 7	51,713,806	51,714,793			988	GTGAGTCCTGCGTCTGAGGCTCTTT..........CTCTACTCCCTCTCCTCCACCACAG
7	EXON 7	51,713,692	51,713,805	1	1	114	GGGGTGAGCTCTACTCTGGGACGTCCTATAATTTCTTGGGTAGTGAACCCATCATCTCTC GAAACTCTTCCCACAGTCCCTTGAGGACGGAGTATGCCATCCCGTGGCTGAACG
	INTRON 7 - 8	51,712,831	51,713,691			861	GTAAGTGTGTGCTGCCAGCCTTGTG..........ACCACCCTGTGATGCCACCCCACAG
8	EXON 8	51,712,679	51,712,830	1	0	152	AGCCTAGCTTCGTCTTTGCTGACGTGATCCAGAAAAGCCCAGATGGTCCGGAGGGTGAAG ATGACAAGGTCTACTTCTTTTTTACGGAGGTATCCGTGGAGTACGAATTCGTCTTCAAGT TGATGATCCCGCGAGTTGCCAGGGTGTGCAAG
	INTRON 8 - 9	51,711,625	51,712,678			1,054	GTGGGTGCTGTCTCCCTGTTCCCAC..........CCATGTGCTGTCTCTGGAATTCCAG
9	EXON 9	51,711,449	51,711,624	0	2	176	GGCGACCAGGGCGGCCTGCGGACTTTGCAAAAAAAGTGGACCTCCTTCCTAAAGGCCAGG CTGATCTGCTCCAAGCCAGACAGTGGCCTGGTCTTCAACATACTTCAGGATGTGTTTGTG CTGAGGGCCCCGGGCCTCAAGGAGCCTGTGTTCTATGCGGTCTTCACCCCACAGCT
	INTRON 9 - 10	51,711,357	51,711,448			92	GTGAGTTCACTTGTGAGTCCCTTGG..........CACTCTCACGGATTCCCCTCCACAG
10	EXON 10	51,711,200	51,711,356	2	0	157	GAACAATGTGGGTCTGTCAGCGGTGTGCGCCTACACACTGGCCACGGTGGAGGCAGTCTT CTCCCGTGGAAAGTACATGCAGAGTGCCACAGTGGAGCAGTCTCACACCAAGTGGGTGCG CTACAATGGCCCAGTGCCCACTCCCCGACCTGGAGCG
	INTRON 10 - 11	51,710,135	51,711,199			1,065	GTAAGCAGGGTCTCGAGCTCTGGGG..........TGACCGCGGTGCTTTTACCCCACAG
11	EXON 11	51,709,912	51,710,134	0	1	223	TGTATCGACAATGAGGCCCGGGCAGCCAACTACACCAGCTCCTTGAATCTCCCAGACAAA ACACTGCAGTTTGTAAAAGACCACCCTTTGATGGATGACTCAGTGACCCCGATAGACAAC AGACCCAAGCTGATCAAAAAAGATGTAAACTACACCCAGATAGTGGTAGACAGGACCCAG GCCCTGGATGGGACTTTCTACGACGTCATGTTCATCAGCACAG
	INTRON 11 - 12	51,708,991	51,709,911			921	GTGGGTTCCTTGGTAAGATTGGGAA..........GCTCACCTGTGTTCTGACCTTGCAG
12	EXON 12	51,708,875	51,708,990	1	0	116	ACCGGGGAGCTCTGCATAAAGCCGTCATCCTCACAAAAGAGGTGCATGTCATCGAGGAGA CCCAACTCTTCCGGGACTCTGAACCGGTCCTAACTCTGCTGCTATCGTCAAAGAAG
	INTRON 12 - 13	51,705,246	51,708,874			3,629	GTAATGTGGGTTTGGTTGGTTGGTT..........CTTGCCATCCGTCTCTCATACACAG
13	EXON 13	51,705,073	51,705,245	0	2	173	GGGAGGAAGTTTGTCTATGCAGGCTCCAACTCTGGAGTGGTCCAAGCGCCCCTGGCATTC TGCGAAAAGCACGGTAGCTGTGAAGACTGTGTGTTAGCACGGGACCCCTACTGTGCCTGG AGCCCAGCCATCAAGGCCTGTGTTACCCTGCACCAGGAAGAGGCCTCCAGCAG
	INTRON 13 - 14	51,704,997	51,705,072			76	GTATGCCTAAGGATGGGGCTGTGTG..........GTAATGTGCGCCTGTTGTCTTCTAG
14	EXON 14	51,704,953	51,704,996	2	1	44	GGGCTGGATTCAGGACATGAGCGGCGACACATCCTCATGCCTGG
	INTRON 14 - 15	51,703,532	51,704,952			1,421	GTGAGTGGATCTCCTTTGCTTCCCA..........GAGCACGTTTATTTTGATGTTCCAG
15	EXON 15	51,701,250	51,703,531	1	-	2,282	ATAAGAGTAAAGAAAGTTTCAACCAGCATTTTTTCAAGCACGGCGGCACAGCGGAACTCA AATGTTTCCAAAAGTCCAACCTAGCCCGGGTGGTATGGAAGTTCCAGAATGGCGAGTTGA AGGCCGCAAGTCCCAAGTACGGCTTTGTGGGCAGGAAGCACCTGCTCATCTTCAACCTGT CGGACGGAGATAGCGGCGTGTACCAGTGCCTGTCAGAGGAAAGGGTGAGGAATAAAACGG TCTCCCAGCTGCTGGCCAAGCACGTTCTGGAAGTGAAGATGGTACCTCGGACCCCCCCCT CACCTACCTCAGAGGATGCTCAGACAGAAGGTAGTAAGATCACATCCAAAATGCCGGTTG CATCTACCCAGGGGTCCTCTCCCCCTACCCCGGCTCTGTGGGCAACCTCCCCCAGAGCCG CCACCCTACCTCCCAAGTCCTCCTCCGGCACATCCTGTGAACCAAAGATGGTCATCAACA CGGTCCCCCAGCTCCACTCAGAGAAGACGGTATATCTCAAGTCCAGTGACAACCGCCTGC TCATGTCTCTCCTCCTCTTCATCTTTGTCCTCTTCCTCTGCCTCTTTTCCTACAACTGCT ACAAGGGCTACCTGCCCGGACAGTGCTTAAAATTCCGCTCAGCCCTGCTGCTTGGAAAGA AAACACCCAAGTCAGACTTCTCTGACCTGGAGCAGAGTGTGAAGGAGACACTGGTCGAGC CTGGGAGCTTCTCCCAGCAGAACGGCGACCACCCCAAGCCAGCCCTGGATACGGGCTATG AAACGGAGCAAGACACCATCACCAGCAAAGTCCCCACGGATCGTGAGGACTCGCAACGGA TCGATGAACTCTCTGCCCGGGACAAACCGTTTGATGTCAAGTGTGAACTGAAGTTTGCAG ATTCGGATGCTGACGGGGACTGAGGCCAGCGTGTCCCAGCCCATGCCCCTCTGTCTTCGT GGAGAGTGTTGTGTTGAGCCCATTCAGTAGCCGAGTCTTGTCACTCTGTGCCAGCCTCAG TCCTGTGTCCCTTTTTCTCTTGGGTTGAGCCTGTGGCTCATCCCCTTTGTCCTTTTGGGA AGCAAGTATCTATTCCAGTCTCAAGTCCTGCAGTTGCTGGAGCGCTTACGCACCTGAGCC CTTTGTGTCCTGGGGGAGAGATGGCCACCTCCGTGGGCTGCGAAGAGCCACCCCTTCCTC TTCCGATTCTCCTAGCAGCCACTCAGAGATAATTTAATTCCAGATTGGAAACGCCCTTTT AGTTTATCAGATTGGTAACTTACATCCTGCTGCCCAGATGGCACGGACAGTTTTCTTTCA CTTAATTTTTTTTTTTTTTTTAAGGATTTTCGCTCCTATTGTGTTGATGTCTTAGGTCAT TTTCTTTTTTTCTTTCTCTTTTTTTATTACCAGAGGAGATGTTTTAATATTCATGAGAAG AGGAACATTTTCTAGATTTTTTTGTTGTTATATATTGAGATATAAAATATGGCTATGTTG CTTAAGATTCTCAGGGATAGACTTATTTTTGTTAACTTCATTCTTTCCTGCTGTTAGGAA CATAGGCCTAAAATTGTCTCTTGAGTTTGCTCACCCTTTTGTTTTGGTAGGGTTTTTTTG TTGTTGCTGTTATTGTTTCTAGTTTGTAATCTTATTCATTTTGAAGGATTTTTCTTTCTG AACTTTTTAAATTTTTATATTTTCCTGCCATACATCTACAAAGTGGGTTTTGAGTGAGGG CAGGTGGCCCAGTGGCTTCCGGTGGCGACTGAGCTGGTCCCACGAGGGGAGGAGGGTTTA TATACCCCATGACCCTGCTGCTTCTTGGCGCCTCCTGCCCATGAGGATCACATCCTGTCT CTCCTTGCTTCCATCTCTCATCACTGCCCTTGGACTTCCGCCTTGACTGTCCACGAAAGA CAGAAATGGGTTGGGTAGTTGGGCTCCCAACCTCGGATGGTGACCGCAACATCCCGTGTG GGCGGCCGGCCGCTCCTGCAGCCCGACTCTCCTGCCAGTGTCTTTCAGGATGTCAACGGG TGGTACGATTCTGGCATTTGTTTCTCGCTCACCGTGTGTGGAACACTCATTCCATGTAGA GGGTGACGAACTCTGGATATCCCCCCACCCCCACCCCGTGCCGTGTAGACACTCATCTTC TGCATGACATGATCTACCATTCGGTGTAAACATTTGTGTTTATAAGATTTACTTTGTTTT TATTTTTCTACTTGGAACTGTACACATTTGAAAAGTACCCAAATAAACCAGAAGCTTTAT CG
	3' upstream sequence						TTGACTGGGCCAGCCTTTGCCTTAGTGTGGAGGCTGGGGGCGGTGGGGTGTCCTCCTGTC CCTCTGTGACGGCCCTGGGTGGGGGTTGGTCCTGGGATCTTGTCTGTTCTCATCCCATGT GTCCGGTTTCTTGCTTTACCTTCTCCGTCATGGGAATGGTTCTGACGACTTCTTCCTCAG TGCCTTCTTTTGTGTCCTCTGTCTCACAGCCTCATCTCCTAAGTCCTTCCCTCCTCCTGG CTCCTCTCTATCCTGTCTGGGCCCTGACTCATCTTCTCCCAGAAGCCCTCGGCCGGCCTT GGCCTCGGGGCCCAACAGCCGTAAGCAGGTCACCTTACTGCCACCCTTCTTGAGTGACCA GGCGCAGAAGGTGCAGGCGCTGGGGACCTTCTACCTCTTCTGCCAGGCCACAGGTGAGTT GAGGGGCCTGAGTGTCCATGGCTGTCCCCTCGCTCTGCCCTTGCTCCTAGCTGTGCCTGA GGTTCAGCTGTCTGTGCTGATCCCGGGATCAACTGTCAACCGTGCAACGCTGTTGCTAGG GCTGCCGCAGGGGTCATCCATCATCTCGCCGTAAAGGTACAGGTGTTGGGTCTTCTGAGC ATGTAGGCTGCTGTGCCCAATGTTGTATGTCAGAAAACTGGACCTACAGGGCAGCAGAGA ACCAGATGAGGCCACGGTTTGCTAACCTGGGTTAGGTAGGGAATTCAAGGCCAACCCCGG GCAACTTATGAGAACCCTGTCTTGGAGTTTTAAAATAAGAATCAGGATACATCCAGTGGT TGAATGTGTGACTAATGTGTACAAGGTCCCAGCCACAGCATAAATAAATACATAAATGCG TGAAGTCCATAAGGTGGAGGTTTTCTCCCTCTGCTGGAGACTATCACATAAGGACATGGA CTCTTGAAAGATGGTAGTTTACCCAAACCATTCTTTAGCTCAGAGATACCCATAGCCCCA TCTTTCCCTGTGGGCTTTGGCCTCTGCACAGAAGTGAGGA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Sema4d (ENSMUSG00000021451)
Transcript ID	ENSMUST00000110039

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 862 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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