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Target CDS Information

Gene Symbol (Gene ID) Rnf144b (ENSMUSG00000038068)
Cross Reference
CCDS CCDS26491.1
EMBL AK040939, AK052846, AK053529, ...show all
Fantom A530048F01, D730050B04, E130105P19
GO GO:0004842, GO:0005737, GO:0006915, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Rnf144b-202
protein_id AAH25007.1, BAC30754.1, BAC35173.1, ...show all
Reactome R-MMU-1280218, R-MMU-168256, R-MMU-983168, ...show all
RefSeq_mRNA NM_001170643.1
RefSeq_peptide NP_001164114
UCSC uc007qhz.2
UniParc UPI00000EBA39
Uniprot/SWISSPROT Q8BKD6
Definition protein_id:ENSMUSP00000105738
translation:
MDSVDGLQCLTMTAENPPSGDLIPAPLVTCKLCLCEQSLDKMTMLQECQCIFCTPCLKQY
MVLSIREGCGSPITCPDMVCLNHGTLQETEIACLVPLDEFQLYQRLKFEREVHMDPLRTW
CPVADCQTVCHISAGDPGQPVLVECPSCHLKFCSCCKDAWHEESSCRDSQSAMPEHGALF
GTDADAPIKQCPVCRIYIERNEGCAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDKGPCRN
KLGHSRASVMWNRTQVVGILVGLGVIALVTSPLLLLASPCIICCVCKSCRGKKKKHDPST
T

Chromosome 13
Length
Position(start - end)
37,114
47,207,386 - 47,244,501
Orient to Chromosome plus
Link Location : (13:47207386-47244501)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rnf144b (ENSMUSG00000038068)
Transcript ID ENSMUST00000110111
Reports
substitution
cSNPs2
Insertion50
Deletion54
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 47237473 (p.Ala134Ala), 47239789 (p.Asn201Asn),
non-synonymous substitutions
B6 transcript
(ENSMUST00000110111)
MDSVDGLQCLTMTAENPPSGDLIPAPLVTCKLCLCEQSLDKMTMLQECQCIFCTPCLKQY
MVLSIREGCGSPITCPDMVCLNHGTLQETEIACLVPLDEFQLYQRLKFEREVHMDPLRTW
CPVADCQTVCHISAGDPGQPVLVECPSCHLKFCSCCKDAWHEESSCRDSQSAMPEHGALF
GTDADAPIKQCPVCRIYIERNEGCAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDKGPCRN
KLGHSRASVMWNRTQVVGILVGLGVIALVTSPLLLLASPCIICCVCKSCRGKKKKHDPST
T*
MSMv4 transcript
MDSVDGLQCLTMTAENPPSGDLIPAPLVTCKLCLCEQSLDKMTMLQECQCIFCTPCLKQY
MVLSIREGCGSPITCPDMVCLNHGTLQETEIACLVPLDEFQLYQRLKFEREVHMDPLRTW
CPVADCQTVCHISAGDPGQPVLVECPSCHLKFCSCCKDAWHEESSCRDSQSAMPEHGALF
GTDADAPIKQCPVCRIYIERNEGCAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDKGPCRN
KLGHSRASVMWNRTQVVGILVGLGVIALVTSPLLLLASPCIICCVCKSCRGKKKKHDPST
T*
homology100.00 (302 / 302)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rnf144b (ENSMUSG00000038068)
Transcript ID ENSMUST00000110111
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CTGAGAGGTGGACTGCTTCCTTACAGCGCCCGTTTACCTGTCCCAGGAAG
CATCTGTGAGCCCCATTCCCTTCAGGAAGTACATCCTGACCTTAGCTGCTAAAGGAAAGG
AAGGTTGCAGAAAGCCCACAGAAAAATCCCTGTGCCAGAGATCTTTCAAAACTGCAATGT
TCAACAGGTTTGGGCTTGTTCTTGTGACCTGTAGGGGCTGGCAGTGAGAGTGAGGGTTTG
CCATTTATTAAAAACACAGTAATAATTAAGCATCCGCTGTCATGGCGGCTTGCTACTCCT
GTTTTCTGGAATAGCTGTTGGATTTCCATTAAGTGAAAATATAACTAGTTACCTTACATG
TGCTTCTCACGTCTCTTATTGACAAAGCACTTGAAGTGAAATCACTGTAAGTACACTAAG
GCTTCTAACTTGATTTGCCCACATCAGATGCACTTGAACAGCTAAAGTACACACTTGAGT
TGAGGTGGGTCGCGCGGAGGGTGATGGTGGTGGTGGGAGGAAGGGTTTGAGGGAGGTGAG
CAGGCAAGTCAAGGGCTGTTAAAAGAAGAAGAGGAAAGGTGGCCTGTGAAGACACACAGA
GACTGCAAGAGCTGCAGGCCAAGCAAGGTGAAGCTTGCGGGTGAGCAGGAGGAAGCGCAG
TGGGGGGTGCTGCTCACACCCGGCGCAGGATTCCTGGGGCAACGCCAGGTCCCCGACCTG
AGAGCCACTGCTCTGCGCTCTGCCTGCATGGGATCGGACAGGGTTAAGGCCATCACCTGC
AGTCGAAGTGCGACCCAGATGGGAAGTAGGAAGTGCGGCGCCGAGCTTCCTGTATAAATA
AACGCTCTGGCTGCTGCGCGCCCCGAGCTGCTGGCTGGTTCTGCAAGGTTCCTGCCTGTC
AAGACAAGGAGGCGGAGAGGGACTCCTCCTCTTCCCGAGCTGTAGGTCTGGGCGTGGAGT
CCTGTGGCAATCCTGCAAAAGTGTAAAGCTGTCAGCCGGGCGGAGCACTC
1 EXON 1 47,194,003 47,194,120 - - 118
AGGGAGAGGGAAGAGAATGAGAGAGCCCTTCCTCCGCGGTGTGCCCGCTGCCCCGGCTGG
CCCAGGCTGGACCTGCTAGAGAGACGCCAAGCAGCCTGAGGACTTCAGCTCCAGCCAG
INTRON 1 - 2 47,194,121 47,207,359 13,239
GTAGGTCTAGAAGGGGTGCTAGTGC..........ACTTTGGGTTGTTTTTGTTCTGTAG
2 EXON 2 47,207,360 47,207,550 - 0 191
GGATAGAGAAGGCTGAAGACAGGCTGATGGACTCCGTCGATGGGCTCCAGTGTCTGACCA
TGACTGCGGAAAACCCACCCTCTGGAGACCTGATTCCCGCCCCGCTCGTCACTTGCAAGC
TCTGCCTGTGTGAACAGTCTCTGGACAAGATGACCATGCTCCAAGAGTGCCAGTGTATCT
TTTGTACACCC
INTRON 2 - 3 47,207,551 47,220,493 12,943
GTAAGTTCTCTTCAGTGTTTGTATC..........TACTTGTATGTATTTTTTTTAATAG
3 EXON 3 47,220,494 47,220,598 0 0 105
TGCCTGAAACAGTATATGGTGCTGTCAATCCGAGAAGGCTGTGGATCTCCTATCACTTGT
CCTGACATGGTGTGCCTAAACCACGGGACCCTGCAGGAAACCGAG
INTRON 3 - 4 47,220,599 47,228,939 8,341
GTATGGATGCATGCCACGACCTTTC..........TCATCTCTCACTGTCTCTGTTGCAG
4 EXON 4 47,228,940 47,229,000 0 1 61
ATTGCCTGTTTGGTGCCTCTGGATGAGTTTCAGCTGTATCAGCGGCTCAAGTTTGAACGA
G
INTRON 4 - 5 47,229,001 47,237,402 8,402
GTACACACTCTTCTGTTTATCCCGG..........CACCGTTTCCTCCTTTATGTTTCAG
5 EXON 5 47,237,403 47,237,601 1 2 199
AGGTTCACATGGACCCCCTCCGGACATGGTGTCCTGTTGCAGACTGCCAGACCGTGTGCC
ATATTTCAGCTGGAGACCCAGGCCAGCCAGTGTTGGTGGAGTGCCCTTCTTGCCACCTGA
AATTCTGCTCATGTTGCAAGGATGCTTGGCACGAGGAGTCTTCCTGTAGAGACAGCCAGT
CGGCGATGCCAGAGCATGG
INTRON 5 - 6 47,237,602 47,239,716 2,115
GTAAGGGAGGAGGTGTGTCTGGGGC..........ACACGTCTCATCTGTTTTGTCCTAG
6 EXON 6 47,239,717 47,239,861 2 0 145
GGCTCTCTTTGGAACGGATGCGGACGCCCCCATCAAGCAGTGCCCGGTTTGCCGCATTTA
CATTGAGCGCAATGAAGGCTGCGCCCAGATGATGTGCAAGAACTGCAAGCACACATTTTG
CTGGTACTGTCTGCAGAACCTGGAC
INTRON 6 - 7 47,239,862 47,242,863 3,002
GTGAGTTCTCCGTGGAAGGGGCTTG..........TGAAACTCCTCTCTTTGTTTTTCAG
7 EXON 7 47,242,864 47,242,953 0 0 90
AATGACATATTCCTCAGGCACTATGACAAAGGGCCATGCAGGAATAAGCTCGGCCACTCG
AGGGCATCGGTAATGTGGAACCGAACACAG
INTRON 7 - 8 47,242,954 47,244,360 1,407
GTAGGCTCCACCTTAAGGGAACGTG..........ATAGGGTTTTCTCTTCAATTTCCAG
8 EXON 8 47,244,361 47,247,991 0 - 3,631
GTAGTGGGGATCCTTGTGGGATTAGGTGTCATTGCCTTGGTGACCTCACCCTTGCTGCTC
CTGGCCTCTCCCTGTATAATCTGCTGTGTCTGCAAGTCCTGTCGCGGCAAGAAGAAAAAG
CATGATCCATCCACAACCTAAAGTCACCTGCGCAGACATCCGGGTCACATGAGACAGCAC
ATTGGTAAAAGCCCCACTTAGCAGCCTTGCCTCCTTCTCCTTGCCAAACTTTGGAAGTGC
CTCTGCCCAGACTTTGAACCTACCTGAAAGCATTCGGTGTTGGAAAAGGCCACGCACCGG
GGCATGAGTGTGCCTGTGTATCAAGAAGCAGCCCCACAGTCCGGACTGTGTCTGTGGAGC
AGGTTGGGAACTTTGCTTTAGCCTGGGAGACTCTAAAACATCACCATCTTACCCTCCAAA
GGATCCCACCAGGCTGCTCATCTTCCATCCAAACCAAGGAGCCTGGGTGAATACTCACTG
TAGTCATGGCGGTATTGCCGCACTTGGCAGCATTGCAAACTGAGCAAACGTCTGTGTTGG
TTCCACTGCCACAAGACACATGGCAGAGGCCCAGAGTCGGAGGGAAGGATGATACTGCAT
AATAACAAGTTCTGTGAGCAGTGGAGCCGCTGCTTATCTCAGGAGCTGACACACTGACTG
GCATGCCTATGCTGGCTACCGCGTGTGCACTTCTTAGCGTTTCCACAGTGACTTGGCAGA
AACATAGCAGCTCTCTCCCCGTGTGATCTCATCTCCAGGCAGGAGAAACTGCCGTTCAGA
GGGAGTTGTCCCTTCCCAGGAAGAGGTTGTAACTTGTAAGGCAACATGGCCTCATTCAGT
GTCTGTTGTTTGGCAGATGTTATTCTTCTAAGGTGAACCAGTGTTCACCACTCACAGTCA
GCCAGCAGCTGTGGTCTCTAAAAAGCGTTTTCTACGGGATGAAAGGGGAAAGCTCCAAAG
CTTTCCTTGTAGACAGCAGGGTCCTTTCTTGGGCTCTGTGGTCATATTCCCAACAGATCA
GGAGTTGGACCAGACAGTGTGCATCAACAGTAGACACTGTAGTCCATTCACACATATAGA
GCCCATGTGACTCCAGCTGGGCACATGTGTAGATATTTAATGGATAACACAAAATAAGAT
TATTTTAAAAGACCTTTTCCCTTTCTAGGACTAAAATGATATATTTATCAGCATAAGAGG
GGTTTTTTTTTGGGGGGGGTTGGTTTTATTTACTTAGTACACATGTGAATTTTTGTTATA
AAGTTCCTAACTTACTCAAGAGGGTAGACTCAAAAGTCTTTTACAACAACCCCTAGTGCG
GTTTTATGCCTCTGTAAAGTGATATTCAGGTTATTTACATACTTTCAGACACAATGTAGA
GCAGCTCTTCACTCAGCCTAATTTAGTCTTGGTCTCCCAGGAGCTGTCCAGACAATCTGA
GTACTTTCTGTGCTCTCAAGAATTTCGTGTGACAACAAGCAATCGGATGGAAACAGTTCA
GGTGTCTTCAGTTGCTGGGATTTGTGTCACCTCAGTGTGATACATCCTGCCTGTTATACA
ATTAATCAGCAAATAGGTTTTGAAAAGATGAGCATATTTTTCCTCTAGCAGTATACAGTT
GCCATTAGCAAAGCAGCCCGGTGCTTCATAAGAACTGTGTGTGTTCCACGTTAACAGAGA
CCTCTCCTGGAAGCCGGGGAGAGTATTCAGGGCCTGTTCTGTTTCCCCCAGTAACTAGGT
GACTAGATTGTTAAACTGCTGCTATTTTAGATCTGTTATCAAAGACCTGTTATCATCAGC
CTTGCCTCTGCAGTGCAATGTATCCCTAAGTGGAGATGTCTGTATGCAAGGGATCACATG
TGCGGTGGAATGTATCCTAAGTGGGCATGTATGTATTCAGGGGATCACATGTGCGGTGGA
ATGTATCCTAAGTGGGCATGTATATATTCAGGGGATCACATGTGTACATTAGCATCTGAT
GTATGTACAGAACATTCCCTGGCCACGTGCTTTTTTTAGTCACAGTTTGTATAAAACATA
GAACTCTAGAAAACTTCTGAATGGCAACCAGCCCAAATCCTTTCAATCATTTATTAGAAA
ATCTTCCATATAAAGTGGCTCCGTCTTCTGGTGAATGTCTTCAGTTACAGCAGGAAAAAC
AAACCTCTCTTTTGAAAGGGTATTTCATATTAGTCTGAATATAAATGACATCTGAGTGGC
GGACCTGCACACATAGTCACCTTCCTCCCTTGAGGTGAGGGGCATTTGTCACAGCTCAGG
GGATTACAGGAGCTCAACTGAAATTGGATTTCTCTGCACGGATGTCAACAGTGACACCAA
GCACCACCCTCAGTAAATTTTCCAGGCCTGCCTGGTTCTAAGTGGGGCCGATTTCATGTA
ACCTGAAATGCTGTTATCTCCGAAGTAGAAGCTGCTGTGAGTGGATTTAGAGTAAAGACG
GAGGCAAATGCCTGGGCGATTTCCCCGGCGAAACTGAGGGAAATCGCCTTCTCAGAGATT
TTTTATAAAAGCATTTGTTTTGAATTTATTTTTCAGCTTGGGGCGGCGGGTGGGGGGGGG
GGTTGTTTGTCAAACTGATTTTACATAACTGGATTTTTTTTTTAATGTTGCAAAGTGCCT
GAATAATGGTGTCTTTTTCATCATATAGCAAAATGTGTGTGAGAGAGTGTGTCAGAATCT
ACTTTGGTAGATGGAACCCAAGTGTCTGTAGCTCTGGCTCATCGCAGGGCGCAATACCAG
CCCAACTGACTTTGTTTACAAAGATACAAGGTGGCAACTGTGCCGGGAAAGGCCGGTGTC
CTGGTGTCCTCGTTTTGGGTAATTAGCCCCTGACGGCTTTACTTACCTGTCCCTCAGCTT
CCTCCTCTTGCTTCAGGAAGGGTTCCTATAGCAAGCGTTTGGCTGTGACAAAGCCCACCA
GGTTCACACCTGGGTGTAACAACCCACCTTCCAGAAATCTCACTGGATGCAAAGGTACAG
CTTCCAGAGCCTGCCGCTGGGGTTCTCCTCTTAGAACAAGTTAGAGAAGAGAGGAAGAAA
GCCATTATGAAAGCAAATGTTAGATAGCGTCTTAGCCACCCTGTTTGTTCACAGTGTGGG
TATTTGTTCTGGACTTGAAATCTGTACTTTGAAAGTGGCCTTTGGAAAGCAAATAAGTCG
GCTTGGATTTTCTTGTTGTCTGCAGCACAAAATAATCTTCCCCGTCCAAGTGGAAAATTC
TCATTGATTTTTTTTTTTTTTTGGATGTACAAAACTGTTTCTTGGAACGCCAAATTTCCT
CTTTGAAATGACTCAATAACTAAGTGTGTGCTGCTTTCGCCTCCTGCGCCCACTGCTCCT
GAACAACCTATCTCTCTGTCGGTGAAGAGATGCCTTTGTGGATGTGAACATCTGGCTGTG
AGACCACAGGAATGCCTTAGAGGAATGGCACTTTGTAAAGCTGTCTGAATTGATATCTAC
AGGCTATCACACCTCCTGTTGGTTCACGATCCAGGAAGTTTTGTTGTGTGCTTACTTAAA
TTTACTGTCGCATTATATAGATTTCCAAGTCTTTGGGAAGAAAATTAACTGTTTTAGTCT
CTTTAGCCCCAATAAATGTGAGCAGGAAACC
3' upstream sequence
AAACGTGTTAGCCTTTGTTCTGTACAGAGTTCGGTTTTAGTCTCTAAGAAACAACTAAAT
CACTCTGAAACCCCAGGCTCGGGATTTACGAATACAACCCAAATTTACGTGTTGGTAGTG
ATTCTTGGTATCACGTTTCTTGAAGAAACAGAAGTGCAATGCTGAGTGCAGACTTCATCC
TTCTGTGTGGGGTGGTCCACGTCAGCACCACACAGGGGTTGACCATCACCCAGAGGCACG
ATCAGCAGTGACATATCTTTGGCCATTCTAAACAACCACCCTACAAAACACAGCTTTGTG
TCAAAGGAGAGCTCAGGAGAAACGAGGCATAGACTGAGCACTAAGATCAGTCCTAACCTT
CATAAAATCTCTTAGAAGGCTACGTTTGCTTGTTATGAGTTTTAAAGAAACGAATTCCAG
GAGAGCAGTATCTTCTGGCCATCACCTTGCCATTAGTATTCAAGGCAGGACTCCCCTGCG
GCCGAGGGCCAGAACTTGGGCAACAGCTGGGTCTTGTGTCTCTGCGGGTCTGAAGGCTCG
CTTTCTTGTACTGGTGTTGCCTTTTTGCTAAGTGTTATATTCCCCTTACAGTAACACCCT
GACATTTGCAATCAACTGACTATTTAAAATTCATTTTGTAATTCAGTTTGGGGTGTGGGG
GGAGCAGAGAGACCATGTAAAACATTTGGGGTTATAGTTTCTTAATTTTTTTAATCATCC
CCTAGAATGTCAGCATTATTGAATTTCCAAAGTGTGCTTGCTGTTTGCTAAGCTTCCATT
TGCATTTCCAAAGAAACACTGAATGAACTGTTTCACCCAGCACCAAGTTTAATCAGTGCC
CTAACCAGCAAATGTGTTGCAATGTAAATTATGCACCCAGTGAATCTACAGAAGAATTAC
AATTAGGTTTTTCTGCAATTCAGTTATCTTCTCTTGCTAGATAGTAAATCCATTTTATCG
TTAGGTCCAACTCTAGATTATGAGAAAGAAATGGTGTTTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Rnf144b (ENSMUSG00000038068)
Transcript ID ENSMUST00000110111
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 302 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information