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Target CDS Information

Gene Symbol (Gene ID) Dtnbp1 (ENSMUSG00000057531)
Cross Reference
EMBL AC159210, AC166074
GO GO:0005886, GO:0007517, GO:0007596, ...show all
goslim_goa GO:0005575, GO:0005622, GO:0005623, ...show all
MGI_trans_name Dtnbp1-202
UCSC uc007qgx.1
UniParc UPI000274724C
Uniprot/SPTREMBL K3W4R3
Definition protein_id:ENSMUSP00000105755
translation:
MLETLRERLLSVQQDFTSGLKTLSDKSREAKVKGKPRTAPRLPKYSAGLELLSRYEDAWA
ALHRRAKECADAGELVDSEVVMLSAHWEKKRTSLNELQGQLQQLPALLQDLESLMASLAH
LETSFEEVENHLLHLEDLCGQCELERHKQAQAQHLESYKKSKRKQCDASSAELDTEHTQK
ALEMEHTQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPMGSMSSMEVNVDVLEQ
MDLMDISDQEALDVFLNSGGEDNIVMSPGVEMESNPNQNEMSLQIPSPSESASQPPASPS
ACTDLDTADAPLIQSDEEEVQVDTALVTLHTDRKSTPGVSDDSDQCDSTQDI

Chromosome 13
Length
Position(start - end)
79,764
44,922,207 - 45,001,972
Orient to Chromosome minus
Link Location : (13:44922207-45001972)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dtnbp1 (ENSMUSG00000057531)
Transcript ID ENSMUST00000110128
Reports
substitution
cSNPs6
Insertion66
Deletion71
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num2
synonymous substitutions 44923213 (p.Gln249Gln), 44931000 (p.Arg221Arg), 44992033 (p.Leu49Leu), 44993729 (p.Thr22Thr),
non-synonymous substitutions 44970101 (p.Glu145Lys), 44993695 (p.Gly34Ser),
B6 transcript
(ENSMUST00000110128)
MLETLRERLLSVQQDFTSGLKTLSDKSREAKVKGKPRTAPRLPKYSAGLELLSRYEDAWA
ALHRRAKECADAGELVDSEVVMLSAHWEKKRTSLNELQGQLQQLPALLQDLESLMASLAH
LETSFEEVENHLLHLEDLCGQCELERHKQAQAQHLESYKKSKRKQCDASSAELDTEHTQK
ALEMEHTQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPMGSMSSMEVNVDVLEQ
MDLMDISDQEALDVFLNSGGEDNIVMSPGVEMESNPNQNEMSLQIPSPSESASQPPASPS
ACTDLDTADAPLIQSDEEEVQVDTALVTLHTDRKSTPGVSDDSDQCDSTQDI*
MSMv4 transcript
MLETLRERLLSVQQDFTSGLKTLSDKSREAKVKSKPRTAPRLPKYSAGLELLSRYEDAWA
ALHRRAKECADAGELVDSEVVMLSAHWEKKRTSLNELQGQLQQLPALLQDLESLMASLAH
LETSFEEVENHLLHLEDLCGQCELKRHKQAQAQHLESYKKSKRKQCDASSAELDTEHTQK
ALEMEHTQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPMGSMSSMEVNVDVLEQ
MDLMDISDQEALDVFLNSGGEDNIVMSPGVEMESNPNQNEMSLQIPSPSESASQPPASPS
ACTDLDTADAPLIQSDEEEVQVDTALVTLHTDRKSTPGVSDDSDQCDSTQDI*
homology99.43 (353 / 353)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dtnbp1 (ENSMUSG00000057531)
Transcript ID ENSMUST00000110128
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCTCCCGATACTGAACCTCTTATAACCTTGACCATCTTGTTATTTAAAAA
AGAGGGTGTCACCCTGGTAGCCAGTCTTTAAGCAAAATGAATCCTCATTTTGGAAGTCTG
CACTCAAGGAAAAAAAAAAGCATGACTAAATATCCAACTTCCTAGCTCAGTAGTCCTCTC
TCCTGAGAAGAAAAGGCTCGGAGTGTTTTAATCCCCTTTTCCACATGGAAGGGCTGGGGA
TGTCACCCACTGCCAGAGTGCTTGTCTAGTATGCCACAAAGGATGCTTGAGATGTCCCGG
GGACAACGCGGTGAAACAACTGAAAGGAAAGGAAGGGGGCAAGCAAAAACAGAGGAGTAC
CCTACAATAGATGACGGCTAGACTAGCCCAGGGAAAGTGCATAGAGAGGAGGAGGAGTCT
GTGCACATAGTTTTGGGCCAGAAGGGATGAAAGGAAGAAAAAAGGTGAGCAACTGCTCTG
AGGATAACTGAAAGGTTGAGAAAAGATTGAAGCACAGAATAAAGAGGGTTGGCTCAGTGG
GAGAGCCTTGGTATGCAAGAAACCGAGTTCCACCCCCACAAGGGGGCAGAGGAGGGGAAA
CATGGCTTTGGCAACATGGAGAGATGAAGGGCACAGAAATTTGACGGGGTCAGTCAAAGA
TCTAGAGTGGGCAAAGTAAGGGTTTGGAGACAGGTGATCATCACCGACAAACCCCAATAC
GGAGTACCAAAGCAGTGTTGTTATAGGGAGGCGCAGCCACCCAGGAGATTCCCGCAGCGC
TCTTCCGACCCTAGAAAGCCAACCAACCCTTCAACTAAAGGGCGCAGGGGCCTGAAATCA
TCCTTCCAAGAAGCAGTCATAACCTTGGAGAAGGCCGGCTTCCCGCCCTGTCTGCAGAGC
CGGCGAGCGCGCTCGCGAAGGCCCCGCCCCTCGGCGCCGCGCGAGCCTCCCCTGAGCGCC
GCACTGCGGCTGCGCCGGCCGGGCGCGCGGAGGGGGGCGGGGACGCGGAA
1 EXON 1 45,001,917 45,002,096 - 2 180
GGCGCGGCGGCCGGGGAGGCTGCGGCGGCGGCGGCGCGGTGAAGCGAGAGCCGGCGCGCG
GGGCGAGGGGACGCCCGACGGCGTCCGAGGGCGCGGTGGCGCGAGGCCTGAGGGAGGGGA
CGCGATGCTGGAGACCCTGCGCGAGCGGCTGCTGAGCGTACAGCAGGATTTCACCTCCGG
INTRON 1 - 2 44,993,739 45,001,916 8,178
GTGAGTACGCGGTGGGCGGCCGAAA..........ATATTTTATATTTCTTTCTTTCTAG
2 EXON 2 44,993,685 44,993,738 2 2 54
GCTGAAGACGTTAAGTGATAAGTCAAGAGAAGCAAAAGTGAAAAGCAAACCCAG
INTRON 2 - 3 44,992,070 44,993,684 1,615
GTGAGCCACGCCACGAGCTTTAGTT..........CTCTAATGAACGTTTCTCTTGGCAG
3 EXON 3 44,992,019 44,992,069 2 2 51
GACTGCTCCACGCTTACCGAAGTACTCTGCTGGACTGGAATTACTTAGCAG
INTRON 3 - 4 44,986,096 44,992,018 5,923
GTAATATTTTCCTTCAGAGAAGAGT..........TTTAAATTATTCTTTGCATTTTTAG
4 EXON 4 44,986,035 44,986,095 2 0 61
GTATGAGGATGCGTGGGCTGCACTTCACAGAAGAGCCAAGGAGTGTGCAGACGCTGGCGA
G
INTRON 4 - 5 44,982,874 44,986,034 3,161
GTAGAGTGTGCTGACCTTACCCTTT..........TGAGCCCCGCTGGTCTGTGTTGCAG
5 EXON 5 44,982,741 44,982,873 0 1 133
CTGGTGGACAGCGAGGTGGTCATGCTGTCTGCCCACTGGGAGAAGAAGAGGACCAGCCTG
AACGAGCTGCAGGGGCAGCTGCAGCAGCTGCCCGCTCTCCTGCAGGACTTGGAGTCTCTG
ATGGCAAGCCTGG
INTRON 5 - 6 44,970,179 44,982,740 12,562
GTAAGTGTGGCCTGTGTGTGAGAGC..........TTCTCGTTTTTGTGTTTACTTTCAG
6 EXON 6 44,970,046 44,970,178 1 2 133
CTCATTTAGAGACAAGTTTTGAAGAGGTAGAGAACCATTTGCTGCACCTGGAGGACTTGT
GTGGGCAGTGTGAGTTAAAAAGACACAAGCAGGCCCAGGCCCAACACCTGGAGAGCTACA
AGAAAAGTAAGAG
INTRON 6 - 7 44,931,258 44,970,045 38,788
GTGAGTTTAAGACTTGGGCTGCAAC..........GGGGCAAGGGCTCAGCACTGGGAAG
7 EXON 7 44,931,247 44,931,257 2 1 11
GAAGCAGTGTG
INTRON 7 - 8 44,931,164 44,931,246 83
GGATGTGGGTAGATGCTGCGGTCTC..........TGCTGGAGCGCTCACCACTGCACCT
8 EXON 8 44,930,996 44,931,163 1 1 168
ATGCTTCCTCAGCTGAACTCGATACAGAGCACACACAGAAGGCCCTGGAAATGGAGCACA
CCCAGCAACTGAAGCTGAAGGAGCGGCAGAAGTTCTTCGAGGAAGCCTTCCAGCAGGACA
TGGAACAGTACCTGTCCACGGGCTACCTGCAGATCGCAGAGAGACGAG
INTRON 8 - 9 44,923,293 44,930,995 7,703
GTGAGCTGGGGCACTTCCAAGCTGC..........GCAAAAAGTCCATCTCTTTTATCAG
9 EXON 9 44,923,149 44,923,292 1 1 144
AGCCTATGGGCAGCATGTCATCCATGGAAGTGAATGTGGACGTGCTGGAGCAGATGGACC
TGATGGACATCTCAGACCAAGAGGCTCTCGATGTCTTCCTGAACTCCGGCGGAGAGGACA
ACATTGTGATGTCCCCTGGTGTGG
INTRON 9 - 10 44,922,455 44,923,148 694
GTAAGAGTAATGACAACACTAAAGT..........AGGCTTTTTCTACTTTCTTCAACAG
10 EXON 10 44,922,085 44,922,454 1 - 370
AGATGGAATCCAACCCCAATCAGAATGAAATGAGTCTTCAGATTCCAAGTCCCTCAGAAT
CAGCATCCCAGCCACCTGCCTCACCCTCTGCCTGCACTGACCTGGACACTGCTGATGCCC
CCCTCATCCAGTCTGATGAGGAGGAGGTACAGGTGGACACGGCCTTGGTCACATTACACA
CTGACAGAAAGTCCACCCCAGGTGTCAGTGATGACAGTGACCAGTGTGACTCAACTCAGG
ACATTTAAGTGACTTGTCAGCTGTGCGCAGAATCCTCCTGCAAAGCCAGGTGCTTAGAGG
TTTTCAATTTTACACACTTGCTAATGGGATGTAAGAACCATTAGAGAAGCGCTCACAATA
AAGCTTATGG
3' upstream sequence
AATAAACACTGTGCAGCTGGTGAGTATATGGGTCGTATAGAGGCCCCTGCCTTGACAGGT
GCTTAGAGCTGATTGACCAAGAGTTCCTAAAGAAACACAGGTGTGGAGGTCTGCTGGAGA
GGGCCTTGAAGGAAATAGGACCTAGGCCAGGCTATGTGGGCACCGTGCCCTACCATACTG
GGAGGCAGAGTCTGTTAGCATAACCAATAGTGGTCAAATTGGGATCTGAAGAACTTAATT
TTACCTAGCATCAGGTGACAACCTGGGAAAGAAACTTGCTTCCCCAAGGTCCCCAGGGCA
TGAGCTAGCCTAGTTGCAGCCCAGAGTGGTGAGCAGTGCCACGGACATGCCTCTGTAGCT
CCGCTCCCTGGCCTAAGAGAGGATGTGTAGCCCCTGCCCCACTGACCAAAGAAAGCCCAA
TCCCTTCCCACAAGACAGACAAAATGTCCAAAAAACTTTTTATTATTAAACCTTGTAGTA
CAAACCTGAAAAGTAAACAAAGAACTGGCAATAACCACACAGAGCCTCCCGGCAGGAGGG
GTGCAGAGCAGCGCTAATAAATTAAATGTCGAACTGTAAGCCATAGGCGAAAGGTTACCG
ACAAAGAGGGGAAAGTCCACAGCAAGGCCATAGAAACTGGACGACCACATTGGAAACACT
CGACTGTTAGGCGATCGTTAAATAGTCCAAAGCAGTTTAGTCTTCTGCAACAACAGCCAC
CAAAGTGGATCCTAGGCGTTCCTGGCAGTCACCACTGGCAAGCTCAGTGCAACGTGGGTA
GCTATGGACTGATCCAATTATGAAACAAACAACAGCTTGTGAAAACAGTTTCCCTTTTTT
ATTCCACACATACTGTACACACAGCCGGAGAAGGGCAACAGCTACTCCACTACCACGTTC
TGTTGCTGTTGAGTGATGTAAGCAGCACTTATACATGTCACAAGAGAACCCTGTAAGCAT
CCAATCAGCCGATGAAGAAACGGAAACGTAAGGCTTTTCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Dtnbp1 (ENSMUSG00000057531)
Transcript ID ENSMUST00000110128
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 353 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information