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Target CDS Information

Gene Symbol (Gene ID) Gcnt2 (ENSMUSG00000021360)
Cross Reference
CCDS CCDS36637.1
EMBL AC133496, AC159205, AK156328, ...show all
Fantom F830016L15
GO GO:0006486, GO:0007179, GO:0008109, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005975, ...show all
MGI_trans_name Gcnt2-203
protein_id AAH94572.1, AAR95649.1, BAE33677.1
RefSeq_mRNA NM_023887.4
RefSeq_peptide NP_076376
UCSC uc007qel.2
UniParc UPI00001E7D61
Uniprot/SPTREMBL Q6T5E4
Definition protein_id:ENSMUSP00000105820
translation:
MGSWKYSLFSLSLIAALMLMFMYDRKLWKNYHFPRAVSNISVLAEVCLQMFSGESFYTAD
SARKTTLENFTCPEYKIQNHYITETLSEEEARFPLAFTLTIHKDYDTFERLFRAIYMPQN
VYCVHVDSKATDTFKEEVRQLLSCFPNAFLASRMEPVVYGGFSRLQADLNCMKDLVASKI
PWKYVLNTCGQDFPLKTNKEIVQYLKRFIGKNLTPGVLPPAHAVGRTKYVHQELLDHKNP
YVHNTARLKAPPPHNLTIYFGTAYVALTREFANFVLKDQRSVDLISWSKDTYSPDEHFWV
TLNRIPGVPGSMPPNASWTGNLRAVKWMDMEAKHGGCHGHYVHGICIYGNGDLQWLINSQ
SLFANKFELNTYPLTVECLELRLRERTLNQSEIAIQPSWYF

Chromosome 13
Length
Position(start - end)
97,986
40,860,355 - 40,958,342
Orient to Chromosome plus
Link Location : (13:40860355-40958342)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gcnt2 (ENSMUSG00000021360)
Transcript ID ENSMUST00000110191
Reports
substitution
cSNPs4
Insertion74
Deletion85
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num1
synonymous substitutions 40860462 (p.Ala36Ala), 40860729 (p.His125His), 40860852 (p.Gln166Gln),
non-synonymous substitutions 40860750 (p.Asp132Glu),
B6 transcript
(ENSMUST00000110191)
MGSWKYSLFSLSLIAALMLMFMYDRKLWKNYHFPRAVSNISVLAEVCLQMFSGESFYTAD
SARKTTLENFTCPEYKIQNHYITETLSEEEARFPLAFTLTIHKDYDTFERLFRAIYMPQN
VYCVHVDSKATDTFKEEVRQLLSCFPNAFLASRMEPVVYGGFSRLQADLNCMKDLVASKI
PWKYVLNTCGQDFPLKTNKEIVQYLKRFIGKNLTPGVLPPAHAVGRTKYVHQELLDHKNP
YVHNTARLKAPPPHNLTIYFGTAYVALTREFANFVLKDQRSVDLISWSKDTYSPDEHFWV
TLNRIPGVPGSMPPNASWTGNLRAVKWMDMEAKHGGCHGHYVHGICIYGNGDLQWLINSQ
SLFANKFELNTYPLTVECLELRLRERTLNQSEIAIQPSWYF*
MSMv4 transcript
MGSWKYSLFSLSLIAALMLMFMYDRKLWKNYHFPRAVSNISVLAEVCLQMFSGESFYTAD
SARKTTLENFTCPEYKIQNHYITETLSEEEARFPLAFTLTIHKDYDTFERLFRAIYMPQN
VYCVHVDSKATETFKEEVRQLLSCFPNAFLASRMEPVVYGGFSRLQADLNCMKDLVASKI
PWKYVLNTCGQDFPLKTNKEIVQYLKRFIGKNLTPGVLPPAHAVGRTKYVHQELLDHKNP
YVHNTARLKAPPPHNLTIYFGTAYVALTREFANFVLKDQRSVDLISWSKDTYSPDEHFWV
TLNRIPGVPGSMPPNASWTGNLRAVKWMDMEAKHGGCHGHYVHGICIYGNGDLQWLINSQ
SLFANKFELNTYPLTVECLELRLRERTLNQSEIAIQPSWYF*
homology99.75 (402 / 402)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gcnt2 (ENSMUSG00000021360)
Transcript ID ENSMUST00000110191
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ATACTGCCTGTCAGGGTTCTCTGAAGAGCTTTCCTCAGCTCCCTAGCATG
CATGCACTTTGGGGTATGCCTTGCCTGCTTCTCTGTTTATTTCCACTCTGTGTCTAATTT
AAAAGACGAGATGACACCCCTCCCCTCCTACCGCCATTCCCTCCTCCTGGCAACTGCCAG
GATTTTCTCCTAGAAGAGGGCATCAGATCTCTTTATAGGTGGTTATGAGCCACCATGTGG
TTGCTGGGATTTGAACTCAGGACCTTCGGCAGAGCAATTGGTGCTCTTACCCACTGAGCC
ATCTCGCCAGCCCTGATTTGTTTTTTCAAGACAGGGTTTCCTCTTTGGAGCCCTGGCTGT
CCTGAAACTCTATAGACCAAACTGGCTTTGAACTCACAGAGATCTGCCTTCCTCTGCCTC
CCAAGAGCTTGGATTAAAGGTATGTACTGTCTGGTCCTGAGTCCATTTCTAATTTCGTGT
ATGATTGAGACTAAGAACCTCCAAAGGGAGCCTCAGTTTCCCCAGCAAAACCGAAGAGGC
CAGGGTAGAAAACTCAATTGTGGTCAGTCATTAGAGGTCAGTCTGGGCAATAAATAAGTA
ACCGAAGCTTCCGAATCTGGGAATCTCTATGTCTAATATTTAAACCTGACTTGTCTCCTC
TCCCTTACTTCTCTGGGCATCATAGCACTCTGCCTGTATCCTAAGTGGGGAAAACATGAA
ACAAACTTGACATTTCGTAACTGTAGCCTCCATGGAATTTGGGGTTGGTGAGAAGCTGCC
GGTCTTTCCGGGATATTTTTAAACAACTAGCCTTTATGTCGAGTGTTTCAGTTGCTTCAT
CCAGGGAGTTAAATGGTGATGTTCTCATAGTAGTTAATATGCCTTTTTAAGGACTTCCCT
AGCAGTGCAGAAAATTAAGCCCTGGAAAGAATTTGGCACAACAGTTAGTCATCCGCCTTG
CTTTAAAGCATACCCAGCTGGTACAAAGGGGGGTGGGGAGTACGGGTGGA
1 EXON 1 40,859,768 40,861,273 - 1 1,506
AAAAGGCCGGGTAAAGCAATTTATTGTCAAGCACGTCGTGTTTTATTGACACAGTCTCTC
TCCAGGCAGTATTCACATGTTCCGAATTGAAGCTTTCAGCTGGGACAGAGCTGGTTAAGC
AAACAAACCGAGTCATTTGAATGCAATGATTAACAGGAAGCCAGGCAGCAGGCACAGTTA
ACAGCCTTCCACTGGGAGAAGACGAGGCTTGGTTTCGAGTTCCAGAGCGATGCCTGGCCG
AAAGGTCACTGATAGAGATTTTCCCGCGAGGACAGGTAGGGTCATTGGCCTCTGGAACCT
CCCTGGGGTGGGGCATTTTTGCGTCGTAATTGGTTATAAGTTACTTGGAGGCTGGGCAAT
GGATCTGCTTCGGAAGTCTGTCAATGAAAAAAAGGAAACAGAAACAAGCTAAGAAAAGGG
AAGGGAGAGAAGAACGAGCCAAGGAGCTTTGCTCATCAGAGCCTCATCCGTGCGGGATGG
TACATCCGTGCGGGATGATACTGGGACCTGGGGAAAACGTAAGTTAAAGGAAGCTTTGCT
CCAATTCTGTCTCTGAAGACACTTGGCTCATTTCCTGCTTTGGGAAGATGGGCTCTTGGA
AGTACAGTCTTTTCAGCCTATCTCTCATTGCTGCCTTGATGCTTATGTTTATGTACGATA
GAAAATTATGGAAGAACTATCATTTCCCGAGGGCAGTTTCCAATATTTCAGTCTTAGCGG
AAGTCTGCTTGCAGATGTTCAGTGGGGAGAGTTTTTATACAGCGGACAGCGCACGGAAAA
CCACCCTGGAAAACTTCACCTGCCCCGAGTACAAGATTCAAAACCACTACATAACAGAGA
CTCTCTCTGAAGAAGAAGCCCGCTTCCCTCTGGCTTTCACACTTACTATCCACAAAGATT
ATGACACTTTCGAGAGACTCTTCAGGGCCATTTACATGCCCCAGAACGTCTACTGTGTGC
ATGTGGATAGTAAGGCGACAGAGACCTTCAAAGAAGAGGTGCGGCAGTTACTAAGCTGTT
TCCCCAATGCCTTCCTGGCCTCTAGGATGGAGCCGGTGGTCTATGGTGGCTTCTCCCGGC
TCCAGGCTGATCTGAACTGCATGAAAGATCTGGTGGCCTCCAAGATCCCCTGGAAATATG
TCCTCAACACCTGCGGGCAGGACTTTCCTCTGAAAACCAACAAAGAAATAGTTCAGTACC
TGAAACGGTTTATTGGGAAGAACCTCACCCCAGGGGTGCTGCCTCCTGCACATGCAGTTG
GAAGAACCAAGTACGTCCACCAGGAGCTGTTAGACCATAAAAATCCCTACGTGCACAATA
CAGCAAGATTAAAAGCTCCCCCACCTCACAACCTGACCATTTACTTTGGCACTGCTTATG
TGGCTCTCACACGGGAATTTGCTAACTTTGTCCTCAAAGACCAGCGTTCAGTAGACTTAA
TCTCCTGGTCCAAGGACACGTATAGTCCTGATGAGCACTTCTGGGTGACACTCAATAGGA
TCCCTG
INTRON 1 - 2 40,861,274 40,953,575 92,302
GTATGTATATTTTGTTTCTCTTACA..........TAGTGCAATGTCGTCATCGTTACAG
2 EXON 2 40,953,576 40,953,671 1 1 96
GAGTCCCTGGCTCCATGCCACCAAACGCATCCTGGACGGGTAACCTCAGAGCTGTGAAGT
GGATGGACATGGAAGCGAAGCATGGAGGCTGCCATG
INTRON 2 - 3 40,953,672 40,958,151 4,480
GTAAGGTCTCCCGCTCTGGGGCCAC..........TGTGCCTCTGCTCTTTCCCCCACAG
3 EXON 3 40,958,152 40,960,891 1 - 2,740
GTCACTACGTCCATGGCATTTGTATCTATGGAAACGGAGACTTGCAGTGGCTGATTAATT
CGCAAAGCCTGTTTGCTAACAAATTTGAACTCAACACATACCCTCTTACCGTGGAATGCC
TGGAACTGAGGCTTCGAGAAAGAACACTCAACCAGAGTGAGATCGCCATACAGCCGAGCT
GGTATTTCTGACCCGCAGCAGCTCGGGCCTAAATGGAAATTGAAGACGTAAAGAAGAGCT
TTCTTTTCCAAGAGACTCTGGTCTTGGCTATGCTGAAGACTTTTTTAAAAAATGGTTTTC
AGGGAACCGTGAGGATCTGGCAACATGGCTCTGCTTGCAATATCCACTGAGCACTGTAAT
ACATTTGACAGGATGGCTGCATGAAACTGTCCAGCATTTTTCTGTCGTTTCCCCCCCACC
CCAAATCCTTTTTTTCTCTTCTTTTTTAAAAGATAGGTAGGGTCTTGCTAGATATCTCTA
GCAAGCCTGTTTCTTGTCAGGTAGCCCAGGATGGCCTTGAACTCTTAATCCTCCGCCTTG
GCCCTCTAAGGGCTGCTAGTCCGAGTGTGGACAACCACACCTGGCTCTGGCATCTGGCGG
TCACTTGACGCTCATCTGCGTCTCCGTCTGCTAGGTGGTCGGTGATAAATTCAAATGTAT
CAGATCTCTGTGCCAGATACTCATATTAGTATACCCTGTTCAAAGGAGAATGGTGGATAA
TACTGTCTGAGGAAATCAGAACTTATTTGAGAAGGAAGCTCTCGTTCCACATTCCTAGTA
ACTATATTCTCAGGCACACATAGGCACACAGAGACAGCTTCCTAGTAACTCACATCAATT
TCGTTTAATACAAACTGATCCTGAAGAGCTGAGGAACTATGTAAGTTCAGTGTCCAAGCA
TTTGACTGACATTTGTGCAGAGTTAGGTTCCATCTCCAGCATCACGCACGGGTCTTGTGA
ACACCGACATCTTCAGTTTACTTGTGTCTGCAGTTCTGTGGACAGAACAAAGCCATTCAC
AAGTGACCGACAGCACGTGCCGTGAGACGGGAGGTGGCTGCAGGAAGAGGATGCCTCAGG
GATGCCGGACATTTCCGTGTTCTATTCCAGAGTGTTCTCTTCTCCCAGAGAACACTGGAA
CGTCCTCACAGGGATGAAGGAATTCTTTCTTTCCCACAGGAAAGGTGCTACTGTGTGGGT
CTGGAACCTGTGAATGAATCACTCCTGGGGTTTCGTTTGTATGTGAGAGACGGGGACCCG
GTTCTGTTGTGTGCAGCTTTAGCGGCATCAGGACAGCTTCCAGCTTGCAATGATTGCTGC
TGACAGGAACACCTGGATCTCAAGAGCTTTTTATGACAGGTGGACATCTGTGTCATTTTT
CCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATTCATTC
GTCAGCCTACATTCAACAAACGCCTCTTGAATGTCTATGATTCCCCCAGACACATGCTGA
CAGACACGAGGGAAGCAAGACAGATTCTTTCTCCACTGTTAAACTCCGGGGAGTGGTATC
AGCTTTTGAAACCCTGCTCTAGACTCTTACAAAATGGCTACACTTAGCACATACTCTGCC
CTGGCTATATATTATATTGGGCCATAGAGATCAGCAATGTATCAATTAATAGATTAATCC
AGAGACAGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT
GTCTCCTTTTATTGAAGAGTCCGCACACATACTCACCCCTCTAGTGGGCCACATGAGGAC
CTGCATCTTGCAGATGATGTAGCAAGCCTTAGGATGGTTCATGATCAGTAGGAAGCAAAT
TCTAAGACCTCAGGGTGTCTTTCTGAGTCTCTCATTTCTTTAGGGATGTGGAGAGAAGAT
GAAGTATAGCCGTGTGTAGTGTCGCCAGAGAAGGTGGAGTTTAAGAATGGTCTCAGTGTT
ATTAATGAGAAAAAGTTCTGTCATTCAGAAAAAAAAAGCAAAAAACGTGAGGTTGGGACT
CAGTAGGTGAGGGTGCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCAC
GGGACAGAGGGAGAGAGTCCACTACTGAAAGGAACGCTCAAACCTCCTCACACAGGTCCT
TGCGCCTGGGCACTCCCCCGCCCCATATGCATACACACATACATGCTTTTGTGATTTTTT
TTATTAGTGCTTTTACATTTAGAAATATTTATTTATTCTAGCAGGGAAAAAACCCCACAT
GCTTTAAATGATGTCACTTTCCACAACTTCATTCTTGTGCTGTCATTGGACTGAATGTTA
TGCATCTTTAAAGGGAATCACTTCGTGTAAAACTCTCTTGTCTCTTCTGCTGAAAAGTAA
AATGGGTTGTGTCGGGTAATAAAGGGTCGAGGGGTAGGAAGCACTTGGTCAAGGCGAAGT
CTAAAACCGGTCTCTTTTGTATTTGTTACTTGGATGAGAGCACCTGAAGACTAATGTTTT
ACACTGGATTGAGATCTCATGGAAAATGAAACATTCTTTTTCTGGAGAAGTTTACATGCC
CATTGTTGGTCACCTCTTTACTGTAAATACTATTGAAAAAAGGAGCGTAGCATTTGCATA
GCAGGGATTGTGCCTGTATCTACTGTGTCCATTTTGTTTTTTCGGATGTTTTCTGGTTTT
GTTTCCTTGGAAATAAATTAATATATTGTTTTCCACCTTC
3' upstream sequence
AGGAATAGTGGATATTTATTTGATACATGGTTAATATGCACTGGGTCCCCCAGCTTTTGA
AAAGGACAAAAGAAACACATTTATATGTGTATAGCTGTCTTAAAATTATCTCTCCACTAA
AAAACATAATTGACCTTTCCATTTGTGGACTAAGGGACACTTTGCACTGCACTTGGGCCA
TCTTCAGGTGAACACAGAGACTGGCTGGGCATTGGGTTTGCTTTCATCATTTTAGTTTCT
AGTCTTGGTAAAATTCCAGTCAGCCACAGACTTCTTGCAGCATAGCTGGCCCTAGAGCTT
GGGCAGGGAAGACCCAAAATGAGACTGGAACGTACTGTTATAATGTGTGGTACAAGAATC
CCAAAAGGGTGACAATCGTGTCACAGGTTCAGGGGTTGCCTTGAACTCTCCTACTGCATC
AGAAATAGGACAATAATAAATTGTGGCCCAATAACTAAAATAAGAATCCAAGCATGCACA
ATACATGCATATACATATATGTAAATGCATGTATAAAATATACACATTATTAAAATGTAT
AAGAGGCAAGAATTAGCTTGAAGGGAGTTCCTGCTCTTGGGTCCAGTGATCACCCAACAA
ATCTATCATGATTCTCTCACCCAGGGCTGAGCACACTGATTCTGTGATGGGTGAGAGAGT
AAATATCTGGGGCTTTGTCAGTCACATGGTTTCTGTCGCGATTATTCACTTCTGCTGTGA
ATACATAGATGATATATAAGCATGGGCTGTGTGTTCTTTGCCGTGGTTGCAGACTATAAG
TTCCTGATCTACCCAATCCCTCTCTAATGCATGTCAGACCCAAAGAAGGCAAAGGACCAT
CCTCTTGGATGTGGATTACCTCCTGATGGGAACACTTGAGTGCCCAACACCTCCCCCACC
CCAGTCCCCAGCCAGGAGGGGAGAGTGAGAAACGAGCACACAGAAGGAAGACCGGTGGCA
TTTCTACTTTGGCTAAGTCTCTGTCTAAGGCACGAGTAAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Gcnt2 (ENSMUSG00000021360)
Transcript ID ENSMUST00000110191
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 402 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information