MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cage1 (ENSMUSG00000044566)

Cross Reference

CCDS	CCDS26460.1
EMBL	AY695827, BC082568, CT010477
GO	GO:0003674, GO:0005515, GO:0005575, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0008150
MGI_trans_name	Cage1-001
OTTP	OTTMUSP00000026640
OTTT	OTTMUST00000055596
protein_id	AAH82568.1, AAV98203.1, CAO77727.1
RefSeq_mRNA_predicted	XM_006516776.2, XM_006516777.2, XM_011244349.1
RefSeq_peptide_predicted	XP_006516839.1, XP_006516840.1, XP_006516841.1, ...show all

UCSC	uc007qde.2
UniParc	UPI00004731F1
Uniprot/SWISSPROT	Q5IR70
Vega_transcript	Cage1-001, OTTMUST00000055596
Vega_translation	214371, OTTMUSP00000026640

Definition

protein_id:ENSMUSP00000105862
translation:

MSESETINVNGPSQDFSYSDSPFCMEASFSSSDLLQSETKNVKRGNESTHTFSEDIYSTE
GSLLGDINLGNYPESEQNQPANTRLSSLRQFEPICKFHWIEAFNDEMTVEDLRGAFSYSE
KPELPSQVYNDAADGSEKPDPFKEESSVESSISENKDELVPAPVRKSPRSLCLNYYRGEA
QPLTEAPFVRSAVVDVGLNISQPQSFLDKENVCKNGDNSSDRENCFEQLDLRAIYKAEEP
EVSSKEVQNSGEISELSVSHQEEVTEDGVDSLAITSPWSPAGIFKGSGPQDNSLRPDREV
SCEGLEPLEEDMALNEALQKLKQTNKKQELQIQDLHGKNLNLENRVQELQTKVTKQHVLV
DIINKLKVNIEELINDKYNVILEKNDINKKLQDLQEASAHTKKHLQESKKDKESLQLQVK
KIKVHYVRLQERYIAEIQQKNRSASQCLEIEKTLSKKDEELQRLQRHKGELEKATSSALD
LLKREKEIREQEFLSFQEEFQRREKESLKERRKLKSRVEKLVAQVKSLLFTCESERAQTM
ALQRQVEELKLENLELRQLAAKREAQACTPSFEITQSKEQLEEAVEPDITQETKGTHCNL
FLNRSSCKENLELQPLKKTSPLASGIHSLLALRIGLLTCQDLATPDAELCQESKKANDIM
LQRLKDCQLKKKDLDKELLKHKNRIATLKELIASEKALQAHTIEITDFDADEVKSARDAP
VLLAVKLDKYHSLNEELDVLITKLGGLLESKEDHYSRLIEENDKYRRHVGSLINKVTSYE
EIIKCADQRLEISHSQIAHLEERNRHLEDLIRMPREKAKRPRPRLDNHPKSLTLISHLEG
HHKECSISL

Chromosome

Length
Position(start - end)

26,382
38,006,089 - 38,032,472

Orient to Chromosome

minus

Link

Location : (13:38006089-38032472)
/

Detail Map

name	Cage1 (ENSMUSG00000044566)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cage1 note : cancer antigen 1 [Source:MGI Symbol;Acc:MGI:1918463]

name	Riok1 (ENSMUSG00000021428)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Riok1 note : RIO kinase 1 (yeast) [Source:MGI Symbol;Acc:MGI:1918590]

name	Cage1 (ENSMUSG00000044566)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000110233

name	Cage1 (ENSMUSG00000044566)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000074969

name	Cage1 (ENSMUSG00000044566)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000089840

name	Cage1 (ENSMUSG00000044566)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000131066

name	Riok1 (ENSMUSG00000021428)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021866

name	Cage1 (ENSMUSG00000044566) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26460.1 Uniprot/SWISSPROT:Q5IR70 RefSeq_mRNA_predicted:XM_006516776.2 RefSeq_mRNA_predicted:XM_006516777.2 RefSeq_mRNA_predicted:XM_011244349.1 RefSeq_peptide_predicted:XP_006516839.1 RefSeq_peptide_predicted:XP_006516840.1 RefSeq_peptide_predicted:XP_006516841.1 RefSeq_peptide_predicted:XP_011242650.1 RefSeq_peptide_predicted:XP_011242651.1 Vega_transcript:Cage1-001 Vega_transcript:OTTMUST00000055596 UCSC:uc007qde.2 EMBL:AY695827 EMBL:BC082568 EMBL:CT010477 GO:GO:0003674 GO:GO:0005515 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Cage1-001 Vega_translation:214371 Vega_translation:OTTMUSP00000026640 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 protein_id:AAH82568.1 protein_id:AAV98203.1 protein_id:CAO77727.1 OTTP:OTTMUSP00000026640 OTTT:OTTMUST00000055596 UniParc:UPI00004731F1
definition	note : transcript_id=ENSMUST00000110233 protein_id : ENSMUSP00000105862 translation : MSESETINVNGPSQDFSYSDSPFCMEASFSSSDLLQSETKNVKRGNESTHTFSEDIYSTEGSLLGDINLGNYPESEQNQPANTRLSSLRQFEPICKFHWIEAFNDEMTVEDLRGAFSYSEKPELPSQVYNDAADGSEKPDPFKEESSVESSISENKDELVPAPVRKSPRSLCLNYYRGEAQPLTEAPFVRSAVVDVGLNISQPQSFLDKENVCKNGDNSSDRENCFEQLDLRAIYKAEEPEVSSKEVQNSGEISELSVSHQEEVTEDGVDSLAITSPWSPAGIFKGSGPQDNSLRPDREVSCEGLEPLEEDMALNEALQKLKQTNKKQELQIQDLHGKNLNLENRVQELQTKVTKQHVLVDIINKLKVNIEELINDKYNVILEKNDINKKLQDLQEASAHTKKHLQESKKDKESLQLQVKKIKVHYVRLQERYIAEIQQKNRSASQCLEIEKTLSKKDEELQRLQRHKGELEKATSSALDLLKREKEIREQEFLSFQEEFQRREKESLKERRKLKSRVEKLVAQVKSLLFTCESERAQTMALQRQVEELKLENLELRQLAAKREAQACTPSFEITQSKEQLEEAVEPDITQETKGTHCNLFLNRSSCKENLELQPLKKTSPLASGIHSLLALRIGLLTCQDLATPDAELCQESKKANDIMLQRLKDCQLKKKDLDKELLKHKNRIATLKELIASEKALQAHTIEITDFDADEVKSARDAPVLLAVKLDKYHSLNEELDVLITKLGGLLESKEDHYSRLIEENDKYRRHVGSLINKVTSYEEIIKCADQRLEISHSQIAHLEERNRHLEDLIRMPREKAKRPRPRLDNHPKSLTLISHLEGHHKECSISL

name	Cage1 (ENSMUSG00000044566) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26460.1 Uniprot/SWISSPROT:Q5IR70 RefSeq_peptide:NP_082000 RefSeq_mRNA:NM_027724.2 RefSeq_peptide_predicted:XP_006516841.1 RefSeq_peptide_predicted:XP_011242650.1 UCSC:uc007qde.2 EMBL:AY695827 EMBL:BC082568 EMBL:CT010477 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Cage1-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 protein_id:AAH82568.1 protein_id:AAV98203.1 protein_id:CAO77727.1 UniParc:UPI00004731F1
definition	note : transcript_id=ENSMUST00000074969 protein_id : ENSMUSP00000074499 translation : MSESETINVNGPSQDFSYSDSPFCMEASFSSSDLLQSETKNVKRGNESTHTFSEDIYSTEGSLLGDINLGNYPESEQNQPANTRLSSLRQFEPICKFHWIEAFNDEMTVEDLRGAFSYSEKPELPSQVYNDAADGSEKPDPFKEESSVESSISENKDELVPAPVRKSPRSLCLNYYRGEAQPLTEAPFVRSAVVDVGLNISQPQSFLDKENVCKNGDNSSDRENCFEQLDLRAIYKAEEPEVSSKEVQNSGEISELSVSHQEEVTEDGVDSLAITSPWSPAGIFKGSGPQDNSLRPDREVSCEGLEPLEEDMALNEALQKLKQTNKKQELQIQDLHGKNLNLENRVQELQTKVTKQHVLVDIINKLKVNIEELINDKYNVILEKNDINKKLQDLQEASAHTKKHLQESKKDKESLQLQVKKIKVHYVRLQERYIAEIQQKNRSASQCLEIEKTLSKKDEELQRLQRHKGELEKATSSALDLLKREKEIREQEFLSFQEEFQRREKESLKERRKLKSRVEKLVAQVKSLLFTCESERAQTMALQRQVEELKLENLELRQLAAKREAQACTPSFEITQSKEQLEEAVEPDITQETKGTHCNLFLNRSSCKENLELQPLKKTSPLASGIHSLLALRIGLLTCQDLATPDAELCQESKKANDIMLQRLKDCQLKKKDLDKELLKHKNRIATLKELIASEKALQAHTIEITDFDADEVKSARDAPVLLAVKLDKYHSLNEELDVLITKLGGLLESKEDHYSRLIEENDKYRRHVGSLINKVTSYEEIIKCADQRLEISHSQIAHLEERNRHLEDLIRMPREKAKRPRPRLDNHPKSLTLISHLEGHHKECSISL

name	Cage1 (ENSMUSG00000044566) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q5IR70 Vega_transcript:Cage1-003 Vega_transcript:OTTMUST00000055641 UCSC:uc007qdf.1 EMBL:AY695827 EMBL:BC082568 EMBL:CT010477 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Cage1-003 Vega_translation:214373 Vega_translation:OTTMUSP00000026669 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 protein_id:AAH82568.1 protein_id:AAV98203.1 protein_id:CAO77727.1 OTTP:OTTMUSP00000026669 OTTT:OTTMUST00000055641 UniParc:UPI000043F2DD
definition	note : transcript_id=ENSMUST00000089840 protein_id : ENSMUSP00000087278 translation : MTVEDLRGAFSYSEKPELPSQVYNDAADGSEKPDPFKEESSVESSISENKDELVPAPVRKSPRSLCLNYYRGEAQPLTEAPFVRSAVVDVGLNISQPQSFLDKENVCKNGDNSSDRENCFEQLDLRAIYKAEEPEVSSKEVQNSGEISELSVSHQEEVTEDGVDSLAITSPWSPAGIFKGSGPQDNSLRPDREVSCEGLEPLEEDMALNEALQKLKQTNKKQELQIQDLHGKNLNLENRVQELQTKVTKQHVLVDIINKLKVNIEELINDKYNVILEKNDINKKLQDLQEASAHTKKHLQESKKDKESLQLQVKKIKVHYVRLQERYIAEIQQKNRSASQCLEIEKTLSKKDEELQRLQRHKGELEKATSSALDLLKREKEIREQEFLSFQEEFQRREKESLKERRKLKSRVEKLVAQVKSLLFTCESERAQTMALQRQVEELKLENLELRQLAAKREAQACTPSFEITQSKEQLEEAVEPDITQVSMQTLNSNTIPRVSPSLVMDAQTGHSECS

name	Cage1 (ENSMUSG00000044566) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cage1-002 Vega_transcript:OTTMUST00000055640 Uniprot/SPTREMBL:A6X912 EMBL:CT010477 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Cage1-002 Vega_translation:214372 Vega_translation:OTTMUSP00000026668 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000026668 OTTT:OTTMUST00000055640 UniParc:UPI0000021BE1
definition	note : transcript_id=ENSMUST00000131066 protein_id : ENSMUSP00000122393 translation : MSESETINVNGPSQDFSYSDSPFCMEASFSSSDLLQSETKNVKRGNESTHTFSEDIYSTEGSLLGDINLGNYPESEQNQPANTRLSSLRQFEPICKFHWIEAFNDEMTVEDLRGAFSYSEKPELPSQVYNDAADGSEKPDPFKEESSVESSISENKDELVPAPVRKSPRSLCLNYYRGEAQPLTEAPFVRSAVVDVGLNISQPQSFLDKENVCKNGDNSSDRENCFEQLDLRAIYKAEEPEVSSKEVQNSGEISELSVSHQEEVTEDGVDSLAITSPWSPAGIFKGSGPQDNSLRPDREVSCEGLEPLEEDMALNEAL

name	Riok1 (ENSMUSG00000021428) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26461.1 Uniprot/SWISSPROT:Q922Q2 RefSeq_peptide:NP_077204 RefSeq_mRNA:NM_024242.3 UCSC:uc007qdi.2 Fantom:3110046C13 Fantom:5430416A05 Fantom:I830082O20 EMBL:AC140331 EMBL:AK014182 EMBL:AK017312 EMBL:AK152707 EMBL:BC002158 EMBL:CT010477 GO:GO:0004674 GO:GO:0005524 GO:GO:0005575 GO:GO:0006468 MGI_trans_name:Riok1-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0016301 goslim_goa:GO:0043167 protein_id:AAH02158.1 protein_id:BAB29195.1 protein_id:BAB30687.2 protein_id:BAE31434.1 UniParc:UPI0000027025
definition	note : transcript_id=ENSMUST00000021866 protein_id : ENSMUSP00000021866 translation : MDCSLDRMASVVPGQFDDADSSDSENKELQPIHAEDGGVLLKSLQNAAAEVKGDAETDEEDDYDDDDDWYLDDATGKLTKGCTWNGGSNYQANRQTSNYNSAKMSTPIDKSLRKFENKINLNKLNVTDSVTNKVTVKLRQKEAESYRIKDKADRATVEQVLDPRTRMILFKLLHKDHISEIHGCISTGKEANVYYASTPSGESRAIKIYKTSILMFKDRDKYVTGEFRFRRGYCKGNPRKMVRTWAEKEMRNLCRLKTANIPCPEPIRLRSHVLLMGFIGKDDMPAPLLKNVQLSESKARELYLQVIQYMRKMYQDARLVHADLSEFNMLYHGGDVYIIDVSQSVEHDHPHALEFLRKDCTNVNDFFSKHAVAVMTVRELFDFVTDPSITADNMDAYLEKAMEIASQRTKEEKTSQDHVDEEVFKQAYIPRTLNEVKNYERDVDIMMRLKEEDMALNTQQDNILYQTVMGLKKDLSGVQKVPALLESEVKEETCFGSDDAGGSECSDTVSEEQEDQAGCRNHIADPDIDKKERKKMVKEAQREKRKNKIPKHVKKRKEKTAKAKKGK

name
type	misc_feature
link
xref
definition	note : contig CT010477.16 1..182219(-1)

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cage1 (ENSMUSG00000044566)
Transcript ID	ENSMUST00000110233

Reports
substitution
cSNPs	16
Insertion	31
Deletion	23
SNPs	+1kb 38036988(c.-4516A>C), 38037133(c.-4661G>A), 38037193(c.-4721G>A), 38037397(c.-4925G>C), 38038071(c.-5599A>T), 38038283(c.-5811C>A), 38038706(c.-6234G>A), 38038772(c.-6300G>C), 38039149(c.-6677C>A), 38039417(c.-6945A>G), 38039435(c.-6963A>G), 38039493(c.-7021A>G), 38039494(c.-7022C>T), 38039918(c.-7446C>T), 38040002(c.-7530G>A), 38040086(c.-7614G>C), 38040322(c.-7850G>C), 38040333(c.-7861A>C), 38040450(c.-7978G>A), 38040496(c.-8024G>C), 38040552(c.-8080A>G), 38040597(c.-8125T>C), 38040710(c.-8238C>G), 38040711(c.-8239C>T), 38040954(c.-8482T>C), 38040992(c.-8520T>C), 38041014(c.-8542A>G), 38041025(c.-8553A>C), 38041046(c.-8574T>C), 38041111(c.-8639C>T), 38041251(c.-8779A>C), 38041486(c.-9014T>C), 38041673(c.-9201C>A), 38041795(c.-9323A>G), 38041821(c.-9349G>T), 38041894(c.-9422G>A), 38041897(c.-9425C>G), 5'UTR CDS 38006094(c.2545T>A), 38017387(c.1941T>C), 38019175(c.1912A>G), 38019224(c.1863G>A), 38019226(c.1861C>T), 38023308(c.878C>T), 38023370(c.816C>T), 38025301(c.699T>G), 38025423(c.577G>A), 38025514(c.486G>T), 38025540(c.460G>A), 38025593(c.407G>A), 38025616(c.384A>G), 38025622(c.378C>T), 38025657(c.343G>C), 38028137(c.162G>A), 3'UTR INTRON 38006912(c.2466-739A>G), 38007071(c.2465+869A>T), 38007546(c.2465+394G>C), 38008818(c.2397-810C>G), 38008965(c.2397-957A>G), 38008986(c.2397-978T>C), 38009023(c.2397-1015G>A), 38009174(c.2397-1166A>T), 38009327(c.2397-1319C>T), 38010347(c.2396+1001G>A), 38010418(c.2396+930G>A), 38010441(c.2396+907C>T), 38010473(c.2396+875A>G), 38010793(c.2396+555T>A), 38010839(c.2396+509C>A), 38010966(c.2396+382C>T), 38011079(c.2396+269C>T), 38011595(c.2326-177A>C), 38011994(c.2325+398T>A), 38012182(c.2325+210G>A), 38012225(c.2325+167C>A), 38012575(c.2221-79G>A), 38013455(c.2221-959C>T), 38013659(c.2221-1163T>C), 38014013(c.2221-1517A>G), 38014059(c.2221-1563C>T), 38014568(c.2220+1112C>T), 38014660(c.2220+1020A>G), 38014701(c.2220+979T>C), 38014758(c.2220+922G>A), 38014795(c.2220+885T>C), 38014799(c.2220+881T>C), 38014844(c.2220+836T>C), 38014866(c.2220+814T>C), 38014878(c.2220+802C>T), 38014932(c.2220+748A>G), 38014939(c.2220+741C>G), 38015079(c.2220+601T>C), 38015137(c.2220+543T>C), 38015210(c.2220+470C>T), 38015231(c.2220+449G>A), 38015249(c.2220+431A>G), 38015289(c.2220+391C>A), 38015313(c.2220+367G>A), 38015315(c.2220+365A>G), 38015332(c.2220+348G>A), 38015402(c.2220+278C>T), 38015408(c.2220+272C>G), 38015495(c.2220+185G>A), 38015508(c.2220+172A>G), 38015518(c.2220+162G>A), 38015555(c.2220+125C>G), 38015601(c.2220+79T>C), 38015925(c.2113-138A>G), 38015936(c.2113-149A>G), 38015951(c.2113-164G>A), 38016111(c.2112+300T>C), 38016131(c.2112+280C>A), 38016290(c.2112+121T>G), 38016853(c.2032-362C>T), 38016942(c.2031+355G>A), 38016943(c.2031+354A>C), 38017225(c.2031+72C>T), 38017271(c.2031+26C>T), 38017667(c.1921-260C>G), 38017683(c.1921-276A>G), 38017695(c.1921-288A>C), 38017729(c.1921-322C>T), 38017797(c.1921-390G>C), 38017901(c.1921-494C>T), 38018106(c.1921-699A>G), 38018113(c.1921-706C>T), 38018152(c.1921-745C>T), 38018242(c.1921-835C>G), 38018430(c.1920+737G>A), 38018431(c.1920+736C>T), 38018432(c.1920+735G>T), 38018436(c.1920+731C>A), 38018463(c.1920+704C>A), 38018545(c.1920+622A>G), 38018561(c.1920+606A>G), 38018609(c.1920+558A>T), 38018860(c.1920+307G>A), 38018862(c.1920+305A>G), 38018882(c.1920+285C>T), 38018916(c.1920+251T>G), 38018931(c.1920+236A>C), 38019341(c.1774-28A>G), 38019358(c.1774-45G>A), 38019814(c.1774-501A>C), 38020024(c.1774-711C>A), 38020328(c.1774-1015T>G), 38020572(c.1774-1259A>T), 38020629(c.1774-1316T>C), 38020716(c.1774-1403T>C), 38020779(c.1774-1466G>C), 38020801(c.1774-1488G>A), 38020865(c.1773+1548T>A), 38020895(c.1773+1518T>A), 38020910(c.1773+1503C>T), 38021253(c.1773+1160T>G), 38021282(c.1773+1131T>A), 38021325(c.1773+1088G>A), 38021347(c.1773+1066C>T), 38021374(c.1773+1039A>G), 38021457(c.1773+956C>T), 38021466(c.1773+947A>T), 38021633(c.1773+780A>T), 38021685(c.1773+728T>A), 38022281(c.1773+132A>G), 38022349(c.1773+64G>A), 38023501(c.718-33G>A), 38023518(c.718-50C>T), 38023546(c.718-78T>C), 38023551(c.718-83G>T), 38023599(c.718-131G>T), 38023863(c.718-395A>G), 38024025(c.718-557G>A), 38024031(c.718-563T>C), 38024051(c.718-583G>A), 38024119(c.718-651G>A), 38024153(c.718-685T>C), 38024164(c.718-696G>A), 38024328(c.718-860G>C), 38024377(c.717+906G>A), 38024402(c.717+881T>C), 38024632(c.717+651T>C), 38024652(c.717+631T>C), 38024790(c.717+493A>G), 38024840(c.717+443A>G), 38024847(c.717+436T>C), 38024865(c.717+418C>T), 38024934(c.717+349C>A), 38025006(c.717+277A>G), 38025007(c.717+276C>T), 38025273(c.717+10G>T), 38025276(c.717+7T>C), 38025890(c.197-87A>G), 38025957(c.197-154A>G), 38025979(c.197-176A>G), 38026104(c.197-301T>A), 38026192(c.197-389A>T), 38026215(c.197-412A>G), 38026218(c.197-415T>G), 38026380(c.197-577A>G), 38026412(c.197-609A>G), 38026429(c.197-626T>G), 38026484(c.197-681A>G), 38026598(c.197-795T>C), 38026610(c.197-807A>T), 38026640(c.197-837C>G), 38026650(c.197-847G>T), 38026690(c.197-887A>C), 38026696(c.197-893A>G), 38026700(c.197-897A>C), 38026880(c.197-1077C>A), 38026909(c.197-1106T>C), 38027002(c.196+1101G>A), 38027009(c.196+1094C>T), 38027211(c.196+892C>A), 38027362(c.196+741T>G), 38027535(c.196+568A>T), 38027539(c.196+564C>T), 38027553(c.196+550G>A), 38027619(c.196+484A>T), 38027885(c.196+218C>A), 38028422(c.109-232T>C), 38028444(c.109-254G>A), 38028462(c.109-272G>A), 38028493(c.109-303G>C), 38028496(c.109-306T>C), 38028876(c.109-686T>G), 38029029(c.109-839T>C), 38029084(c.109-894G>A), 38029273(c.109-1083T>C), 38029322(c.109-1132T>C), 38029349(c.109-1159C>T), 38029352(c.109-1162C>T), 38029447(c.109-1257C>T), 38029576(c.109-1386T>C), 38029931(c.109-1741T>C), 38030624(c.108+1741C>T), 38030633(c.108+1732A>T), 38030649(c.108+1716C>T), 38030650(c.108+1715A>G), 38030652(c.108+1713C>G), 38030697(c.108+1668C>T), 38030721(c.108+1644T>A), 38030856(c.108+1509T>C), 38030863(c.108+1502G>C), 38030865(c.108+1500C>A), 38030891(c.108+1474T>A), 38030911(c.108+1454G>T), 38032675(c.-152-51A>T), 38032720(c.-152-96G>A), 38032743(c.-152-119C>A), 38032822(c.-152-198T>C), 38032890(c.-152-266T>C), 38033137(c.-152-513T>A), 38033272(c.-152-648G>A), 38033366(c.-152-742C>G), 38033367(c.-152-743C>A), 38033401(c.-152-777A>G), 38033616(c.-152-992A>G), 38033703(c.-152-1079G>A), 38033709(c.-152-1085A>G), 38033784(c.-152-1160A>G), 38033794(c.-152-1170C>T), 38033868(c.-152-1244G>A), 38033928(c.-152-1304G>A), 38033997(c.-152-1373C>T), 38034007(c.-152-1383G>A), 38034027(c.-152-1403T>A), 38034039(c.-152-1415G>C), 38034209(c.-152-1585C>T), 38034214(c.-152-1590A>G), 38035009(c.-153+1779G>T), 38035284(c.-153+1504C>T), 38035318(c.-153+1470C>G), 38035322(c.-153+1466A>G), 38035426(c.-153+1362G>A), 38035980(c.-153+808T>C), 38036377(c.-153+411G>A), 38036623(c.-153+165T>G), -1kb 38001503(c.4586T>C), 38001876(c.4213G>T), 38001982(c.4107T>C), 38001987(c.4102A>G), 38002424(c.3665A>G), 38002565(c.3524C>T), 38002566(c.3523T>G), 38003085(c.3004G>A), 38003087(c.3002G>T), 38003103(c.2986A>G), 38003116(c.2973C>T), 38004201(c.1888G>A), 38004244(c.1845C>G), 38005283(c.806C>T), 38005286(c.803C>G), 38005348(c.741C>T), 38005431(c.658T>A), 38005575(c.514T>A), 38005779(c.310G>A), 38005862(c.227A>G), 38005915(c.174A>G), 38005916(c.173C>T), 38005918(c.171C>T), 38005919(c.170C>T), 38005982(c.*107G>A),
Insertions	+1kb 38037040 (c.-4569dupT), 38039128 (c.-6657dupG), 38039452 (c.-6981_-6980insTA), 38039480 (c.-7009_-7008insTT), 38040853 (c.-8382_-8381insG), 5'UTR CDS 3'UTR INTRON 38011140 (c.2396+207_2396+208insACACCA), 38011742 (c.2326-325dupT), 38011745 (c.2326-329_2326-328dupTT), 38016353 (c.2112+57_2112+58insG), 38017911 (c.1921-505dupA), 38018627 (c.1920+539_1920+540insC), 38019153 (c.1920+9_1920+13dupCAAAA), 38019547 (c.1774-235_1774-234insACATAA), 38020967 (c.1773+1445_1773+1446insA), 38020984 (c.1773+1428dupC), 38020990 (c.1773+1422_1773+1423insGTC), 38021868 (c.1773+544dupT), 38026224 (c.197-422_197-421insACTTC), 38028411 (c.109-222_109-221insT), 38028496 (c.109-307dupC), 38028499 (c.109-310_109-309insC), 38031009 (c.108+1354_108+1355dupCA), 38033416 (c.-152-793dupA), 38033421 (c.-152-798_-152-797insA), 38033501 (c.-152-878_-152-877insAAAC), 38034229 (c.-152-1606_-152-1605insG), 38034263 (c.-152-1641_-152-1640dupCT), 38035131 (c.-153+1656dupT), 38036153 (c.-153+634dupT), -1kb 38004219 (c.1869_1870insG), 38005072 (c.1016_1017insC),
Deletions	+1kb 38037720 (c.-5249delA), 38040109 (c.-7640_-7638delGCC), 38041204 (c.-8733delA), 38041315 (c.-8845_-8844delTA), 38041906 (c.-9435delA), 5'UTR CDS 3'UTR INTRON 38011431 (c.2326-14delA), 38011735 (c.2326-319_2326-318delTT), 38012907 (c.2221-412delA), 38013771 (c.2221-1278_2221-1276delTCG), 38015346 (c.2220+332_2220+333delCA), 38016145 (c.2112+265delT), 38016495 (c.2032-5delT), 38018456 (c.1920+709_1920+710delGC), 38020449 (c.1774-1142_1774-1137delATATGC), 38021386 (c.1773+1026delG), 38026174 (c.197-372delA), 38027742 (c.196+347_196+360delTACACCCTCCCCCC), 38029024 (c.109-835delC), 38030448 (c.108+1916delT), 38033517 (c.-152-895_-152-894delAT), 38036316 (c.-153+468_-153+471delAAAA), 38036708 (c.-153+78_-153+79delTT), 38036740 (c.-153+45_-153+47delTGT), -1kb
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	8
non-synonymous num	8
synonymous substitutions	38017387 (p.Ala647Ala), 38019224 (p.Pro621Pro), 38023370 (p.Leu272Leu), 38025301 (p.Ala233Ala), 38025514 (p.Ala162Ala), 38025616 (p.Val128Val), 38025622 (p.Ser126Ser), 38028137 (p.Glu54Glu),
non-synonymous substitutions	38006094 (p.Leu849Met), 38019175 (p.Thr638Ala), 38019226 (p.Pro621Ser), 38023308 (p.Ser293Phe), 38025423 (p.Val193Ile), 38025540 (p.Glu154Lys), 38025593 (p.Ser136Asn), 38025657 (p.Ala115Pro),
B6 transcript (ENSMUST00000110233)	MSESETINVNGPSQDFSYSDSPFCMEASFSSSDLLQSETKNVKRGNESTHTFSEDIYSTE GSLLGDINLGNYPESEQNQPANTRLSSLRQFEPICKFHWIEAFNDEMTVEDLRGAFSYSE KPELPSQVYNDAADGSEKPDPFKEESSVESSISENKDELVPAPVRKSPRSLCLNYYRGEA QPLTEAPFVRSAVVDVGLNISQPQSFLDKENVCKNGDNSSDRENCFEQLDLRAIYKAEEP EVSSKEVQNSGEISELSVSHQEEVTEDGVDSLAITSPWSPAGIFKGSGPQDNSLRPDREV SCEGLEPLEEDMALNEALQKLKQTNKKQELQIQDLHGKNLNLENRVQELQTKVTKQHVLV DIINKLKVNIEELINDKYNVILEKNDINKKLQDLQEASAHTKKHLQESKKDKESLQLQVK KIKVHYVRLQERYIAEIQQKNRSASQCLEIEKTLSKKDEELQRLQRHKGELEKATSSALD LLKREKEIREQEFLSFQEEFQRREKESLKERRKLKSRVEKLVAQVKSLLFTCESERAQTM ALQRQVEELKLENLELRQLAAKREAQACTPSFEITQSKEQLEEAVEPDITQETKGTHCNL FLNRSSCKENLELQPLKKTSPLASGIHSLLALRIGLLTCQDLATPDAELCQESKKANDIM LQRLKDCQLKKKDLDKELLKHKNRIATLKELIASEKALQAHTIEITDFDADEVKSARDAP VLLAVKLDKYHSLNEELDVLITKLGGLLESKEDHYSRLIEENDKYRRHVGSLINKVTSYE EIIKCADQRLEISHSQIAHLEERNRHLEDLIRMPREKAKRPRPRLDNHPKSLTLISHLEG HHKECSISL*
MSMv4 transcript	MSESETINVNGPSQDFSYSDSPFCMEASFSSSDLLQSETKNVKRGNESTHTFSEDIYSTE GSLLGDINLGNYPESEQNQPANTRLSSLRQFEPICKFHWIEAFNDEMTVEDLRGPFSYSE KPELPSQVYNDAADGNEKPDPFKEESSVESSISKNKDELVPAPVRKSPRSLCLNYYRGEA QPLTEAPFVRSAIVDVGLNISQPQSFLDKENVCKNGDNSSDRENCFEQLDLRAIYKAEEP EVSSKEVQNSGEISELSVSHQEEVTEDGVDSLAITSPWSPAGIFKGSGPQDNFLRPDREV SCEGLEPLEEDMALNEALQKLKQTNKKQELQIQDLHGKNLNLENRVQELQTKVTKQHVLV DIINKLKVNIEELINDKYNVILEKNDINKKLQDLQEASAHTKKHLQESKKDKESLQLQVK KIKVHYVRLQERYIAEIQQKNRSASQCLEIEKTLSKKDEELQRLQRHKGELEKATSSALD LLKREKEIREQEFLSFQEEFQRREKESLKERRKLKSRVEKLVAQVKSLLFTCESERAQTM ALQRQVEELKLENLELRQLAAKREAQACTPSFEITQSKEQLEEAVEPDITQETKGTHCNL FLNRSSCKENLELQPLKKTSSLASGIHSLLALRIGLLACQDLATPDAELCQESKKANDIM LQRLKDCQLKKKDLDKELLKHKNRIATLKELIASEKALQAHTIEITDFDADEVKSARDAP VLLAVKLDKYHSLNEELDVLITKLGGLLESKEDHYSRLIEENDKYRRHVGSLINKVTSYE EIIKCADQRLEISHSQIAHLEERNRHLEDLIRMPREKAKRPRPRLDNHPKSLTLISHLEG HHKECSISM*
homology	99.06 (850 / 850)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cage1 (ENSMUSG00000044566)
Transcript ID	ENSMUST00000110233


..........TCACTTGGAAGGCTCGACCTGGCTGGCCTCCCTTTTTTGCCTCAATTCTC
TCCGCTACGCTGTAGGTGCTAGCCTCTTGGTTTGCCCTCCTTTCCAAAAAGACAGTAGTG
ACTTGATTTGTCTTGTTCATCATACTCGCAGAGGTAAAACTTTTGCTCACTGTGTATGGA
AGCCTGTATGAAGAAAAGAAAGGAAAAAAAAAAGGCCCACCTTCCTCAGTGGTCCCCAAC
TCTTGCTTCTCTGCTAAACGTCCCGGGACCCACTGACAGGTAGGTAGCTTTCACAAGCTG
CTCACCCCGAGAAAAATCCAAAGCCGTCAGCTGTCAGCTCCCCGAGCCCAATGTGGAGCT
GGCGGAATCGGAGGAGTCCCTGTGTCACCACCGGCCGCCTACCTGTCTGAGGAATCCGCG
TCGTCAAATTGCCCGGGGACCACCGAAGCCATCCTGTCCAGACTGCAGTCCATGGCTAGG
GGTGTGAGCCTTCGGCGCCCCTGAGGCCGCGATCGGAAGAGCCTGCTTCCCACCTACAGG
ATCCAAACGCGTCTCCGCGATTCCCGCCCCTCAAATCCCTCGGCAACCGCCAGGCCCAAG
AAGGCAACGACCAGGCGCCACCGGGGTGTCAGGATACAGGGTTTCGGCAAACGCGGCCAC
CAACAGGCCGGAAGTGCAACGCCGGAAGTATGCCACCAGCAGGGCCTCTCCAAACCCTAG
TGCCCTCAGGGAGCATGCGCATGACGGTGGCCGGGAAAGACCAATCCGCGATGTGAAGTG
GGCGTGGTGCGTTGTTTGTAACGTGGGATGTGTAGCTCTTGTTGCTCCCCAGCCTTTCGT
TCTTGCTCCACCATGGCGTTTACGGTCATAGGAAGTCAGCCTGTTTTTTTTTTCCTCCGG
CTGCTCCTGAAGACTTGCGTCCTCTGACCTTCTTCCTCTGGACCCCGGTGCGGTCCGGAG
GACGTCACACTGGGGCGTTCGAGCGCCCTGCGACGCACCAGTTGGTGCCC
TCGGTGGGGACGGTTGGAAGGTGTTCTCCCTCCCGCGGAGCCGGTGTGCCGGGAGGAAACCCGGAATCCTTAGCCTGAGTCACAGAAGCTCGATGGATCATGGAAGTGAGCACACTTTTGCTCTCTAGAAACGTTG
GTGCGTTGTTTTGAGATGCAATGAT..........TCTCTTTTGCTTGCTTGTTTTAAAG
AGGCCTTCTGTCACTTAGCGGTTAGAAATACGGACTCTTCACACGTTTTGGTCATCATCCCTGGCAGTGCAAAACAAAAAAGGAAAGTTATTGCCTTCATCTTTGGTTCCTGTACATTTTGAAGTGGATACTTGCATGAAATTTTAGAAAGTATGTCAGAGTCGGAAACAATAAATGTCAATGGTCCCTCTCAAGACTTCTCCTACTCAGACTCGCCCTTCTGTATGGAAGCCAGCTTCTCCTCCTCAGACCTGCTTCAG
GTGTGCAATCTACAGTAGTAAGTTT..........TAATGCTCTTTAAATTATTACACAG
AGTGAAACAAAGAATGTGAAAAGGGGAAATGAGTCTACACACACGTTCTCTGAAGATATTTATAGCACAGAAGGCAGTTTGTTAGGTG
GTAAGTATCCCTTTGCTGAAATATA..........ACTCAATATCTTTTTTTCTAATAAG
ATATCAACCTTGGGAATTACCCAGAGAGTGAGCAGAATCAACCAGCTAACACTAGGCTTTCTTCCTTGAGACAATTTGAACCCATTTGCAAATTTCACTGGATAGAAGCGTTTAACGATGAAATGACAGTTGAAGACCTGAGGGGGCCGTTTTCTTACTCGGAGAAGCCAGAGTTGCCAAGTCAGGTGTACAATGATGCAGCAGATGGCAATGAAAAGCCAGATCCATTTAAGGAAGAAAGTTCAGTGGAAAGTAGCATTTCCAAAAATAAGGACGAACTTGTTCCCGCTCCAGTGAGGAAATCTCCAAGAAGTCTATGTCTAAACTACTACAGAGGAGAGGCACAGCCGCTCACAGAGGCGCCATTCGTGAGAAGTGCCATCGTAGATGTCGGCCTCAATATCAGTCAGCCTCAAAGCTTTCTGGATAAAGAAAATGTCTGTAAAAATGGTGACAATTCGTCTGATAGGGAGAATTGCTTCGAGCAGCTTGACTTGAGAGCGATTTATAAAGCAGAGGAG
GTAAGCCCGTGTGCTGGTGTCATTA..........TTATTTTATTTACTATAATTTACAG
CCTGAAGTTTCTTCAAAAGAAGTACAGAATTCTGGAGAGATTTCTGAGCTATCAGTTAGTCACCAGGAAGAAGTCACAGAAGATGGCGTTGACAGCCTTGCCATTACCTCACCGTGGTCTCCAGCTGGCATCTTCAAGGGAAGTGGGCCTCAGGACAACTTCCTGAGGCCTGATAGAGAGGTCAGCTGTGAAGGCTTAGAGCCTCTGGAAGAGGACATGGCTTTAAATGAAGCCTTGCAAAAATTAAAACAGACTAACAAAAAGCAGGAACTGCAGATTCAAGACCTCCATGGTAAGAACTTGAACTTAGAAAATAGGGTTCAAGAACTACAGACAAAGGTCACCAAACAGCACGTGTTGGTTGATATCATAAATAAACTAAAGGTGAACATTGAGGAGTTAATCAATGATAAATACAACGTAATCCTAGAGAAGAATGACATCAACAAGAAACTTCAGGATCTGCAGGAAGCTTCGGCTCACACCAAAAAGCACCTTCAGGAATCCAAGAAAGACAAGGAGAGCCTCCAGCTCCAGGTGAAAAAGATTAAGGTCCATTACGTGCGCTTACAGGAAAGGTATATTGCTGAGATCCAGCAGAAGAACAGATCGGCCAGTCAGTGCCTGGAGATAGAAAAGACCTTAAGCAAGAAAGACGAGGAGCTCCAGCGGCTGCAGCGCCACAAAGGGGAGCTGGAGAAGGCCACCAGTTCTGCCCTGGACTTGCTGAAGCGGGAGAAGGAGATCCGGGAACAAGAGTTCTTGTCTTTTCAGGAGGAATTCCAGAGGCGGGAAAAGGAAAGCCTGAAAGAAAGGCGGAAATTGAAGTCGAGAGTTGAGAAGCTGGTCGCTCAAGTGAAAAGCTTGCTGTTCACCTGTGAGAGCGAGAGAGCTCAAACCATGGCGCTCCAGCGGCAGGTCGAAGAGCTGAAGCTGGAGAACTTAGAACTCCGACAGCTGGCTGCGAAGAGGGAGGCCCAAGCTTGCACCCCTAGCTTTGAGATTACTCAGTCAAAGGAGCAGCTGGAGGAAGCGGTGGAGCCGGACATCACCCAG
GTATCCATGCAGACGCTGAATTCTA..........ATAAATCCGAATTGTGCACATGTAG
GAGACAAAGGGGACACATTGTAATTTGTTCCTGAATCGCTCTTCTTGTAAAGAAAACCTGGAGCTCCAACCTCTGAAGAAAACTTCTTCACTGGCCTCTGGAATTCACAGCCTTTTGGCCCTGAGAATAGGACTTCTCGCGTGTCAG
GTAAAAAACAAAATAAAGAAATCAA..........TAGTTTCTCAAACCATTATCCTTAG
GACCTTGCCACGCCTGATGCCGAGCTTTGCCAAGAGAGTAAGAAAGCTAATGACATAATGCTGCAAAGACTGAAGGACTGTCAGCTTAAAAAGAAGGACTTAGATAAAGAG
GTACTGTGTTCTTCTTTTCTAAAAC..........AAAAAAAATGCTTTTTTTTTTCTAG
CTATTGAAACATAAAAACAGAATTGCGACTCTTAAAGAGTTAATTGCTAGTGAAAAGGCACTTCAAGCCCACACTATTGAG
GTGAGTTATAACATGTTATACTTGG..........TGTGTACAAACATATCTAATCTTAG
ATCACAGATTTTGATGCAGACGAGGTCAAGAGTGCCAGAGATGCGCCTGTGTTGCTGGCAGTCAAACTGGATAAATACCACAGTCTGAATGAGGAACTTGATGTCTTG
GTAAGACAGACCAATGCCTTATGGT..........CATTTTCGCTGATGTCTCTCCATAG
ATTACAAAGCTGGGAGGGCTTCTGGAGAGCAAAGAAGACCACTACAGCAGACTCATTGAGGAGAATGACAAGTACCGGAGACACGTAGGCAGCCTGATAAATAAG
GTACTTGTCTCCCCACAGGAACAAA..........ATAAAAAAAAAATTGTTTTCTCAAG
GTAACGTCATATGAAGAAATTATCAAATGTGCTGACCAAAGACTTGAGATATCACATTCTCAGATTGCACA
GTAAGTTAAGAAAACTATTTTTTTG..........AAAATGCAATTGTTTCTTTCTTTAG
CTTGGAAGAGAGGAATAGACATTTAGAAGATTTAATTAGAATGCCCAGAGAGAAAGCCAAAAGGCCAAG
GTAAGTTTTCCTTCTGTTTAAAAAG..........ACATCATTTTCCTTCTTTCTTACAG
ACCAAGATTAGATAATCACCCAAAGTCCTTGACCTTGATAAGTCATCTTGAGGGCCACCATAAAGAATGTTCTATTTCCATGTGAACTGACAGTAATACATGATTAAATATTCATTCGTGAA
GTTATGTTAACTTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAACGAGTGTGTGC
AATGAGTGTATGCATGCATGCCTGAGTGTCGTAGGTGGAGAACAAACTTAGGTGTTCCTC
CCCAGGAGTCATTTGTGCCATTTCTGGACACGGGCTCTCTCACTGGCCCATGAACTTACC
TAGTAGGCTGGGCTGGTTGGCCAGTGAGCCCAGGACTCCTCCTGTCTCCATCTCCATAGT
GCTAAGACTGCCAGTGTGAAGCACTTTCCAGCACTTTCAAAATGTGGGATTTAGAAATGT
GAATCAGGTCCTCACGCTTGCTCTCCAAACATGTGACCTATTGAAGTTATTTCCTGCTTG
GTCTCCTGTTTGCCCCATTCCATCCCTTTGTCAAATCCCCAAACTAGGCTGGAAGTGTAG
CTGTTAATCAACACATTCTGTCCACGGATATACAGAGATCGTTAAATCAGTCAGGTACAC
CGGGCAGTGGTGGCACACGTCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT
CTGAGTTTGAGGCAAGCATGGTCTACAGAGTTCCAGGACAGCCAGGGCTACACAGAGAAA
CCCTGTCTCGAAAAAAAAAAATTAGTCAGGTACAAGAGGGAGTATGTGTGGTGTGTATTC
CGAAGGACATGCTGAACTAGTCATATGATCACACTTCTATCTGTGGGAGAACTCTATCCA
GCAGAGCCTCTAACACTTGTGTCTGTGGGAGAACTCTATCCAGCAGAGTCTCTAACACTT
GTGTCTGTGGAGAACTCTATCCAGCAGAGCCTCTAACACTTGTGTCTGTGGAGAACTCTA
TCCAGCAGAGCCTCTAACACTTGTGTCTGTGGGAGAACTCTATCCAGCAGAGTCTCTAAC
ACTTGTGTCTGTGGGAGAACTCTATCCAGCAGAGCCTCTAACACTTGTGTCTGTGGAGAA
CTCTATCCAGCAGAGCCTCTAACACTTGTGTCTGTGGGAG..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TCACTTGGAAGGCTCGACCTGGCTGGCCTCCCTTTTTTGCCTCAATTCTC TCCGCTACGCTGTAGGTGCTAGCCTCTTGGTTTGCCCTCCTTTCCAAAAAGACAGTAGTG ACTTGATTTGTCTTGTTCATCATACTCGCAGAGGTAAAACTTTTGCTCACTGTGTATGGA AGCCTGTATGAAGAAAAGAAAGGAAAAAAAAAAGGCCCACCTTCCTCAGTGGTCCCCAAC TCTTGCTTCTCTGCTAAACGTCCCGGGACCCACTGACAGGTAGGTAGCTTTCACAAGCTG CTCACCCCGAGAAAAATCCAAAGCCGTCAGCTGTCAGCTCCCCGAGCCCAATGTGGAGCT GGCGGAATCGGAGGAGTCCCTGTGTCACCACCGGCCGCCTACCTGTCTGAGGAATCCGCG TCGTCAAATTGCCCGGGGACCACCGAAGCCATCCTGTCCAGACTGCAGTCCATGGCTAGG GGTGTGAGCCTTCGGCGCCCCTGAGGCCGCGATCGGAAGAGCCTGCTTCCCACCTACAGG ATCCAAACGCGTCTCCGCGATTCCCGCCCCTCAAATCCCTCGGCAACCGCCAGGCCCAAG AAGGCAACGACCAGGCGCCACCGGGGTGTCAGGATACAGGGTTTCGGCAAACGCGGCCAC CAACAGGCCGGAAGTGCAACGCCGGAAGTATGCCACCAGCAGGGCCTCTCCAAACCCTAG TGCCCTCAGGGAGCATGCGCATGACGGTGGCCGGGAAAGACCAATCCGCGATGTGAAGTG GGCGTGGTGCGTTGTTTGTAACGTGGGATGTGTAGCTCTTGTTGCTCCCCAGCCTTTCGT TCTTGCTCCACCATGGCGTTTACGGTCATAGGAAGTCAGCCTGTTTTTTTTTTCCTCCGG CTGCTCCTGAAGACTTGCGTCCTCTGACCTTCTTCCTCTGGACCCCGGTGCGGTCCGGAG GACGTCACACTGGGGCGTTCGAGCGCCCTGCGACGCACCAGTTGGTGCCC
1	EXON 1	38,036,788	38,036,923	-	-	136	TCGGTGGGGACGGTTGGAAGGTGTTCTCCCTCCCGCGGAGCCGGTGTGCCGGGAGGAAAC CCGGAATCCTTAGCCTGAGTCACAGAAGCTCGATGGATCATGGAAGTGAGCACACTTTTG CTCTCTAGAAACGTTG
	INTRON 1 - 2	38,032,625	38,036,787			4,163	GTGCGTTGTTTTGAGATGCAATGAT..........TCTCTTTTGCTTGCTTGTTTTAAAG
2	EXON 2	38,032,365	38,032,624	-	0	260	AGGCCTTCTGTCACTTAGCGGTTAGAAATACGGACTCTTCACACGTTTTGGTCATCATCC CTGGCAGTGCAAAACAAAAAAGGAAAGTTATTGCCTTCATCTTTGGTTCCTGTACATTTT GAAGTGGATACTTGCATGAAATTTTAGAAAGTATGTCAGAGTCGGAAACAATAAATGTCA ATGGTCCCTCTCAAGACTTCTCCTACTCAGACTCGCCCTTCTGTATGGAAGCCAGCTTCT CCTCCTCAGACCTGCTTCAG
	INTRON 2 - 3	38,028,191	38,032,364			4,174	GTGTGCAATCTACAGTAGTAAGTTT..........TAATGCTCTTTAAATTATTACACAG
3	EXON 3	38,028,103	38,028,190	0	1	88	AGTGAAACAAAGAATGTGAAAAGGGGAAATGAGTCTACACACACGTTCTCTGAAGATATT TATAGCACAGAAGGCAGTTTGTTAGGTG
	INTRON 3 - 4	38,025,804	38,028,102			2,299	GTAAGTATCCCTTTGCTGAAATATA..........ACTCAATATCTTTTTTTCTAATAAG
4	EXON 4	38,025,283	38,025,803	1	0	521	ATATCAACCTTGGGAATTACCCAGAGAGTGAGCAGAATCAACCAGCTAACACTAGGCTTT CTTCCTTGAGACAATTTGAACCCATTTGCAAATTTCACTGGATAGAAGCGTTTAACGATG AAATGACAGTTGAAGACCTGAGGGGGCCGTTTTCTTACTCGGAGAAGCCAGAGTTGCCAA GTCAGGTGTACAATGATGCAGCAGATGGCAATGAAAAGCCAGATCCATTTAAGGAAGAAA GTTCAGTGGAAAGTAGCATTTCCAAAAATAAGGACGAACTTGTTCCCGCTCCAGTGAGGA AATCTCCAAGAAGTCTATGTCTAAACTACTACAGAGGAGAGGCACAGCCGCTCACAGAGG CGCCATTCGTGAGAAGTGCCATCGTAGATGTCGGCCTCAATATCAGTCAGCCTCAAAGCT TTCTGGATAAAGAAAATGTCTGTAAAAATGGTGACAATTCGTCTGATAGGGAGAATTGCT TCGAGCAGCTTGACTTGAGAGCGATTTATAAAGCAGAGGAG
	INTRON 4 - 5	38,023,469	38,025,282			1,814	GTAAGCCCGTGTGCTGGTGTCATTA..........TTATTTTATTTACTATAATTTACAG
5	EXON 5	38,022,413	38,023,468	0	0	1,056	CCTGAAGTTTCTTCAAAAGAAGTACAGAATTCTGGAGAGATTTCTGAGCTATCAGTTAGT CACCAGGAAGAAGTCACAGAAGATGGCGTTGACAGCCTTGCCATTACCTCACCGTGGTCT CCAGCTGGCATCTTCAAGGGAAGTGGGCCTCAGGACAACTTCCTGAGGCCTGATAGAGAG GTCAGCTGTGAAGGCTTAGAGCCTCTGGAAGAGGACATGGCTTTAAATGAAGCCTTGCAA AAATTAAAACAGACTAACAAAAAGCAGGAACTGCAGATTCAAGACCTCCATGGTAAGAAC TTGAACTTAGAAAATAGGGTTCAAGAACTACAGACAAAGGTCACCAAACAGCACGTGTTG GTTGATATCATAAATAAACTAAAGGTGAACATTGAGGAGTTAATCAATGATAAATACAAC GTAATCCTAGAGAAGAATGACATCAACAAGAAACTTCAGGATCTGCAGGAAGCTTCGGCT CACACCAAAAAGCACCTTCAGGAATCCAAGAAAGACAAGGAGAGCCTCCAGCTCCAGGTG AAAAAGATTAAGGTCCATTACGTGCGCTTACAGGAAAGGTATATTGCTGAGATCCAGCAG AAGAACAGATCGGCCAGTCAGTGCCTGGAGATAGAAAAGACCTTAAGCAAGAAAGACGAG GAGCTCCAGCGGCTGCAGCGCCACAAAGGGGAGCTGGAGAAGGCCACCAGTTCTGCCCTG GACTTGCTGAAGCGGGAGAAGGAGATCCGGGAACAAGAGTTCTTGTCTTTTCAGGAGGAA TTCCAGAGGCGGGAAAAGGAAAGCCTGAAAGAAAGGCGGAAATTGAAGTCGAGAGTTGAG AAGCTGGTCGCTCAAGTGAAAAGCTTGCTGTTCACCTGTGAGAGCGAGAGAGCTCAAACC ATGGCGCTCCAGCGGCAGGTCGAAGAGCTGAAGCTGGAGAACTTAGAACTCCGACAGCTG GCTGCGAAGAGGGAGGCCCAAGCTTGCACCCCTAGCTTTGAGATTACTCAGTCAAAGGAG CAGCTGGAGGAAGCGGTGGAGCCGGACATCACCCAG
	INTRON 5 - 6	38,019,314	38,022,412			3,099	GTATCCATGCAGACGCTGAATTCTA..........ATAAATCCGAATTGTGCACATGTAG
6	EXON 6	38,019,167	38,019,313	0	0	147	GAGACAAAGGGGACACATTGTAATTTGTTCCTGAATCGCTCTTCTTGTAAAGAAAACCTG GAGCTCCAACCTCTGAAGAAAACTTCTTCACTGGCCTCTGGAATTCACAGCCTTTTGGCC CTGAGAATAGGACTTCTCGCGTGTCAG
	INTRON 6 - 7	38,017,408	38,019,166			1,759	GTAAAAAACAAAATAAAGAAATCAA..........TAGTTTCTCAAACCATTATCCTTAG
7	EXON 7	38,017,297	38,017,407	0	0	111	GACCTTGCCACGCCTGATGCCGAGCTTTGCCAAGAGAGTAAGAAAGCTAATGACATAATG CTGCAAAGACTGAAGGACTGTCAGCTTAAAAAGAAGGACTTAGATAAAGAG
	INTRON 7 - 8	38,016,492	38,017,296			805	GTACTGTGTTCTTCTTTTCTAAAAC..........AAAAAAAATGCTTTTTTTTTTCTAG
8	EXON 8	38,016,411	38,016,491	0	0	81	CTATTGAAACATAAAAACAGAATTGCGACTCTTAAAGAGTTAATTGCTAGTGAAAAGGCA CTTCAAGCCCACACTATTGAG
	INTRON 8 - 9	38,015,788	38,016,410			623	GTGAGTTATAACATGTTATACTTGG..........TGTGTACAAACATATCTAATCTTAG
9	EXON 9	38,015,680	38,015,787	0	0	108	ATCACAGATTTTGATGCAGACGAGGTCAAGAGTGCCAGAGATGCGCCTGTGTTGCTGGCA GTCAAACTGGATAAATACCACAGTCTGAATGAGGAACTTGATGTCTTG
	INTRON 9 - 10	38,012,497	38,015,679			3,183	GTAAGACAGACCAATGCCTTATGGT..........CATTTTCGCTGATGTCTCTCCATAG
10	EXON 10	38,012,392	38,012,496	0	0	105	ATTACAAAGCTGGGAGGGCTTCTGGAGAGCAAAGAAGACCACTACAGCAGACTCATTGAG GAGAATGACAAGTACCGGAGACACGTAGGCAGCCTGATAAATAAG
	INTRON 10 - 11	38,011,419	38,012,391			973	GTACTTGTCTCCCCACAGGAACAAA..........ATAAAAAAAAAATTGTTTTCTCAAG
11	EXON 11	38,011,348	38,011,418	0	2	71	GTAACGTCATATGAAGAAATTATCAAATGTGCTGACCAAAGACTTGAGATATCACATTCT CAGATTGCACA
	INTRON 11 - 12	38,008,009	38,011,347			3,339	GTAAGTTAAGAAAACTATTTTTTTG..........AAAATGCAATTGTTTCTTTCTTTAG
12	EXON 12	38,007,940	38,008,008	2	2	69	CTTGGAAGAGAGGAATAGACATTTAGAAGATTTAATTAGAATGCCCAGAGAGAAAGCCAA AAGGCCAAG
	INTRON 12 - 13	38,006,174	38,007,939			1,766	GTAAGTTTTCCTTCTGTTTAAAAAG..........ACATCATTTTCCTTCTTTCTTACAG
13	EXON 13	38,006,052	38,006,173	2	-	122	ACCAAGATTAGATAATCACCCAAAGTCCTTGACCTTGATAAGTCATCTTGAGGGCCACCA TAAAGAATGTTCTATTTCCATGTGAACTGACAGTAATACATGATTAAATATTCATTCGTG AA
	3' upstream sequence						GTTATGTTAACTTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAACGAGTGTGTGC AATGAGTGTATGCATGCATGCCTGAGTGTCGTAGGTGGAGAACAAACTTAGGTGTTCCTC CCCAGGAGTCATTTGTGCCATTTCTGGACACGGGCTCTCTCACTGGCCCATGAACTTACC TAGTAGGCTGGGCTGGTTGGCCAGTGAGCCCAGGACTCCTCCTGTCTCCATCTCCATAGT GCTAAGACTGCCAGTGTGAAGCACTTTCCAGCACTTTCAAAATGTGGGATTTAGAAATGT GAATCAGGTCCTCACGCTTGCTCTCCAAACATGTGACCTATTGAAGTTATTTCCTGCTTG GTCTCCTGTTTGCCCCATTCCATCCCTTTGTCAAATCCCCAAACTAGGCTGGAAGTGTAG CTGTTAATCAACACATTCTGTCCACGGATATACAGAGATCGTTAAATCAGTCAGGTACAC CGGGCAGTGGTGGCACACGTCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT CTGAGTTTGAGGCAAGCATGGTCTACAGAGTTCCAGGACAGCCAGGGCTACACAGAGAAA CCCTGTCTCGAAAAAAAAAAATTAGTCAGGTACAAGAGGGAGTATGTGTGGTGTGTATTC CGAAGGACATGCTGAACTAGTCATATGATCACACTTCTATCTGTGGGAGAACTCTATCCA GCAGAGCCTCTAACACTTGTGTCTGTGGGAGAACTCTATCCAGCAGAGTCTCTAACACTT GTGTCTGTGGAGAACTCTATCCAGCAGAGCCTCTAACACTTGTGTCTGTGGAGAACTCTA TCCAGCAGAGCCTCTAACACTTGTGTCTGTGGGAGAACTCTATCCAGCAGAGTCTCTAAC ACTTGTGTCTGTGGGAGAACTCTATCCAGCAGAGCCTCTAACACTTGTGTCTGTGGAGAA CTCTATCCAGCAGAGCCTCTAACACTTGTGTCTGTGGGAG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cage1 (ENSMUSG00000044566)
Transcript ID	ENSMUST00000110233

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 850 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information