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Target CDS Information

Gene Symbol (Gene ID) Glis3 (ENSMUSG00000052942)
Cross Reference
GO GO:0000122, GO:0000978, GO:0001077, ...show all
goslim_goa GO:0001071, GO:0003674, GO:0003677, ...show all
MGI_trans_name Glis3-002
OTTP OTTMUSP00000044917
OTTT OTTMUST00000083541
RefSeq_peptide_predicted XP_006527050.1
UniParc UPI0000434F1F
Uniprot/SWISSPROT Q6XP49
Vega_transcript Glis3-002, OTTMUST00000083541
Vega_translation 222505, OTTMUSP00000044917
Definition protein_id:ENSMUSP00000108231
translation:
MNGRSCGMNLHRTSRTPQGPGLLGGQHIPPIRAHAGTPCSSSCASTPSPSIGSLANSLHL
KMSSGAGMAPQSNMAASPIHLPALSPRRQLLANGKPQFQVTPAGVMAAPHTIKPKQQEFG
DPFSPNPEKGALGFGPQCKSIGKGSCNNLVVTSSPMMVQRLGPISPPASQVSTACKQISP
SLPRAVNAANLNRPPSDTRSVILQESLVSTTLSLTESQSALSVKQEWSQSYRAFPSLSSS
HSSQNGTDLGDLLSLPPGTPVSGNSVSNSLPPYLFGMENSHSPYPSPRHSATRAHSTRSK
KRALSLSPLSDGIGIDFNTIIRTSPTSLVAYINGPRASPANLSPQSEVYGHFLGVRGSCI
PQSCAVASGQKGILVASGGHTLPGYGEDGTLEYERMQQLEHGGLQPGPVNNMVLQPGLPG
QDGQTANMLKTERLEEFPASALDLPSALPLPLPPPQGPPPPYHAHPHLHHPELLPHTQSL
SLAQTGLEEDGEMEDSGGKHCCRWIDCSALYDQQEELVRHIEKVHIDQRKGEDFTCFWTG
CPRRYKPFNARYKLLIHMRVHSGEKPNKCTFEGCKKAFSRLENLKIHLRSHTGEKPYLCQ
HPGCQKAFSNSSDRAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAHSSREQQARK
KLTNICASSHW

Chromosome 19
Length
Position(start - end)
316,144
28,349,995 - 28,666,140
Orient to Chromosome minus
Link Location : (19:28349995-28666140)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Glis3 (ENSMUSG00000052942)
Transcript ID ENSMUST00000112612
Reports
substitution
cSNPs5
Insertion275
Deletion308
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num2
synonymous substitutions 28350022 (p.Thr663Thr), 28531368 (p.Gln405Gln), 28665760 (p.Pro127Pro),
non-synonymous substitutions 28531473 (p.Gln370His), 28531787 (p.Val266Ile),
B6 transcript
(ENSMUST00000112612)
MNGRSCGMNLHRTSRTPQGPGLLGGQHIPPIRAHAGTPCSSSCASTPSPSIGSLANSLHL
KMSSGAGMAPQSNMAASPIHLPALSPRRQLLANGKPQFQVTPAGVMAAPHTIKPKQQEFG
DPFSPNPEKGALGFGPQCKSIGKGSCNNLVVTSSPMMVQRLGPISPPASQVSTACKQISP
SLPRAVNAANLNRPPSDTRSVILQESLVSTTLSLTESQSALSVKQEWSQSYRAFPSLSSS
HSSQNGTDLGDLLSLPPGTPVSGNSVSNSLPPYLFGMENSHSPYPSPRHSATRAHSTRSK
KRALSLSPLSDGIGIDFNTIIRTSPTSLVAYINGPRASPANLSPQSEVYGHFLGVRGSCI
PQSCAVASGQKGILVASGGHTLPGYGEDGTLEYERMQQLEHGGLQPGPVNNMVLQPGLPG
QDGQTANMLKTERLEEFPASALDLPSALPLPLPPPQGPPPPYHAHPHLHHPELLPHTQSL
SLAQTGLEEDGEMEDSGGKHCCRWIDCSALYDQQEELVRHIEKVHIDQRKGEDFTCFWTG
CPRRYKPFNARYKLLIHMRVHSGEKPNKCTFEGCKKAFSRLENLKIHLRSHTGEKPYLCQ
HPGCQKAFSNSSDRAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAHSSREQQARK
KLTNICASSHW*
MSMv4 transcript
MNGRSCGMNLHRTSRTPQGPGLLGGQHIPPIRAHAGTPCSSSCASTPSPSIGSLANSLHL
KMSSGAGMAPQSNMAASPIHLPALSPRRQLLANGKPQFQVTPAGVMAAPHTIKPKQQEFG
DPFSPNPEKGALGFGPQCKSIGKGSCNNLVVTSSPMMVQRLGPISPPASQVSTACKQISP
SLPRAVNAANLNRPPSDTRSVILQESLVSTTLSLTESQSALSVKQEWSQSYRAFPSLSSS
HSSQNGTDLGDLLSLPPGTPVSGNSISNSLPPYLFGMENSHSPYPSPRHSATRAHSTRSK
KRALSLSPLSDGIGIDFNTIIRTSPTSLVAYINGPRASPANLSPQSEVYGHFLGVRGSCI
PQSCAVASGQKGILVASGGHTLPGYGEDGTLEYERMQQLEHGGLQPGPVNNMVLQPGLPG
QDGQTANMLKTERLEEFPASALDLPSALPLPLPPPQGPPPPYHAHPHLHHPELLPHTQSL
SLAQTGLEEDGEMEDSGGKHCCRWIDCSALYDQQEELVRHIEKVHIDQRKGEDFTCFWTG
CPRRYKPFNARYKLLIHMRVHSGEKPNKCTFEGCKKAFSRLENLKIHLRSHTGEKPYLCQ
HPGCQKAFSNSSDRAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAHSSREQQARK
KLTNICASSHW*
homology99.85 (672 / 672)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Glis3 (ENSMUSG00000052942)
Transcript ID ENSMUST00000112612
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCTTAAGGCAAACATTTCACTGACTGAGCTGTCTCTCTCCAGACCCAGCC
TAGTGAACAGTATCCTAAGCTGTGGCACCACCGAGTTCATTTCATCCACAAAGAGGAATA
GAACAAAACTCACTGTACAAAGGCCTAACTGGAGGATGCTGAGTGTAAAATACCCGTTGG
ATTTCAAGCTGGGAAGTCTTTGCTTTCTGTGGCAATCCACAGTGGGTCCACTAACAGGAG
GTCTTTTTGTGAGAGGCTTCTGAGGGCTCTGATCGAGCCTGATGGAAGGGCTGCAACTTA
GGTGGGATAGAAAGCTGGGGAATGTTGAACTCTAAGAAGAAAGTACCACTGTACACAAGC
AAAGTCTGCGAGGTGGGTGTGCCATTCCTCCCAGCCTGCTTGTTTCCCCCTCATCCCCAC
CTTCTTCTCTTCCTTTTATCCTTTGGAAGATGTCACAGGCATCCTCTCTGCATTCCACAG
CCAGTTTTGGAATTGCCACCAGAATCCAATCCCACATATTAGGGTTCCTCCCCCCTCTGT
TTTTATCACTTTTCCGTTTCCACTCCCCCCCGCCCCCTTTTACTACAAGGATTTCTCTCT
TGATCCATGGGAGTTGACAACAGGTCCAGTTGAAGGGCTGACACTTTTTTAGATTAAAAA
AAAAAGGCAAACAAATAGGTTCAGAAAGGTGAAGAGTCGCCCCGCGGTTACCCGCTCTGG
AGTTTTATGGGAAGGAGCGTGTGTGCGCGAACGTCAAGAGGGAGACACTGGCTGGCCTGG
TGACCAGGAGCCCGCCCCCATCCCTCCCCGCCCCCTCCGGCGCTCACACTCAGGAAGCAG
CTGGCTGCGGGCCGGCCCTCGCGGCCGCACACACATCCACACTCCTCGCCTGGCAGCCTC
CCTCCCGCCCTCTTCCCCCTTTCCCCTCTCTCCCTGCAGCCGCGTCCCTACTGCGCCGCC
GGGGCAGCCCAGAGCGCGGCGCGCAAGGGCACCGGCGCCAGGGTCCGCGC
1 EXON 1 28,679,596 28,680,077 - - 482
ACCTCGGGGCCGCGGCGGGCCCGGGTCCAGGCTCGCACCGGCGCTCTCTAGCCGCGACCC
AGCTCAGGCAGCCAGCATCCCGAGCCCGGCCCCTCCAGGCGTCGCCCTCGGCCCCGAGCG
AGGATGAGCACCCCGGGCCAGGCATGAAGTCGCCTCTCAACTTTGTAAAGACATGACTGG
AGTGTGCCTGTGCGTAGCGCGGACAGGGAGCTGATGCGGAGAGTCGGCCCGCTGCCCTGC
CTCCTCCTCCCAGGGCCGCCGCCGTCGCAGCCTCGCGCGGGCACACACACGGCCCTCCGG
CCGTAGTTCCGCGCTCCGGCCACGGGCTTGGATGCGAGTTTTCCTTTCCGAAGGAGGCAG
AGCCGGCGTGGAGCGCTGAGGGGGCTCAGCCTCCACCCACGCATCGCTAGTGCTGTCACG
AGCGGGCTGGCCGGGAGAAGGGACTCGCTCGCCTAGCTTTGTTGTGGAAATCCGGTTACC
TG
INTRON 1 - 2 28,666,237 28,679,595 13,359
GTAAGTGGATGCCATAGGAACTTTG..........CTGCCTTTGTTTTTGTTTTAAACAG
2 EXON 2 28,665,753 28,666,236 - 1 484
ACTTATCACCTATCCCATGGATAAGTTACTTGCCTTGCCTTGAAAGAATCAATAGTGCCA
TCGGATATTGATCAGCGTGGCCTCAGGGCTCTCAGAATGAATGGAAGGTCATGTGGCATG
AATCTCCACCGGACATCAAGAACCCCACAGGGGCCTGGCCTACTCGGTGGTCAACATATC
CCTCCCATCAGAGCCCACGCAGGCACTCCCTGCTCCTCTTCCTGTGCCAGCACGCCGAGC
CCCAGTATTGGAAGTCTTGCTAACAGTCTTCACCTCAAGATGTCCTCGGGAGCAGGGATG
GCTCCTCAGAGCAACATGGCCGCGAGTCCCATCCATCTGCCTGCCCTGAGCCCCAGGAGA
CAGTTACTCGCCAATGGGAAGCCTCAGTTCCAGGTCACCCCGGCTGGTGTCATGGCAGCA
CCACATACTATAAAGCCCAAACAGCAAGAATTTGGAGACCCCTTCTCTCCAAATCCCGAG
AAAG
INTRON 2 - 3 28,540,409 28,665,752 125,344
GTAGGATTGTCACTTGGGAATCTCT..........GCTAACCTGATTCGTTTGTTTTTAG
3 EXON 3 28,540,201 28,540,408 1 2 208
GGGCTCTTGGCTTTGGGCCTCAGTGCAAGTCCATTGGAAAAGGCAGCTGCAACAATCTAG
TGGTCACCAGCAGTCCCATGATGGTTCAGCGACTGGGACCCATTTCACCTCCAGCAAGCC
AGGTCTCCACAGCATGCAAGCAGATCAGTCCTAGCTTACCGAGGGCAGTGAATGCAGCCA
ACCTGAATAGACCTCCTTCAGATACCAG
INTRON 3 - 4 28,531,987 28,540,200 8,214
GTCTCAACTTACGTTTTTTTCCCCC..........CCCTTCTCTCTGGCTGCTGCCCCAG
4 EXON 4 28,530,873 28,531,986 2 0 1,114
GTCCGTTATTTTGCAAGAGTCTCTGGTGTCCACGACTTTGAGTCTGACAGAGAGTCAATC
AGCCTTGAGTGTGAAGCAAGAGTGGTCTCAGAGCTACAGGGCTTTCCCTTCACTTTCATC
CAGCCACAGTTCCCAGAATGGCACGGACCTAGGGGACCTTCTTAGCTTGCCTCCAGGCAC
GCCAGTGTCTGGCAACAGCATCTCCAACTCGTTGCCACCCTACCTTTTCGGCATGGAAAA
TAGCCACTCTCCTTACCCTAGCCCTCGGCACTCAGCAACCAGGGCCCACTCCACCCGCTC
TAAGAAGAGAGCATTGTCCTTGTCGCCACTGTCAGATGGCATCGGGATCGACTTCAACAC
TATCATCCGTACTTCACCCACATCCTTGGTCGCCTACATCAACGGACCAAGAGCCTCCCC
AGCCAACCTGTCCCCACAGTCAGAGGTCTATGGGCATTTCCTGGGTGTTCGTGGCAGCTG
CATCCCCCAGTCTTGTGCAGTGGCCAGCGGGCAGAAAGGCATATTGGTTGCCAGTGGAGG
GCATACGCTGCCGGGCTATGGAGAGGACGGTACACTGGAGTATGAACGCATGCAGCAGCT
TGAGCATGGTGGCCTGCAGCCCGGACCTGTAAACAACATGGTGTTGCAGCCTGGCCTACC
GGGCCAGGATGGCCAGACAGCCAACATGCTCAAAACAGAGCGCCTGGAGGAGTTCCCCGC
CAGTGCCTTGGACCTGCCCTCTGCTCTGCCTCTCCCTCTTCCTCCGCCTCAGGGTCCCCC
ACCCCCATACCATGCCCATCCACACCTTCATCACCCAGAGCTCCTGCCTCACACCCAATC
GCTGTCCCTGGCCCAGACTGGCCTGGAAGAGGATGGGGAGATGGAAGACTCAGGGGGGAA
GCACTGCTGCCGTTGGATAGACTGCAGTGCCCTTTATGACCAGCAGGAGGAACTGGTGAG
GCACATCGAGAAGGTCCACATAGACCAACGCAAGGGGGAAGACTTCACGTGCTTCTGGAC
TGGCTGCCCTAGAAGATACAAGCCTTTCAACGCACGGTATAAACTGCTGATCCACATGAG
GGTCCACTCTGGGGAGAAGCCCAACAAGTGTACG
INTRON 4 - 5 28,357,953 28,530,872 172,920
GTGAGTTGGAGTTTCCGAGGTCCTG..........ACTAAACCTTGTTTTCTTTTTGCAG
5 EXON 5 28,357,791 28,357,952 0 0 162
TTCGAAGGCTGCAAGAAGGCCTTTTCCAGGCTCGAGAACCTCAAGATTCACTTGCGGAGC
CACACGGGTGAGAAGCCATACTTGTGCCAGCATCCGGGCTGCCAAAAGGCCTTCAGCAAT
TCCAGTGACCGTGCCAAGCACCAGAGGACACATCTTGACACT
INTRON 5 - 6 28,354,317 28,357,790 3,474
GTAAGGATGGCAGGGGCTGGCCACC..........TCTTTTCTTTTTCTTTCTCGTCCAG
6 EXON 6 28,354,206 28,354,316 0 0 111
AAACCTTATGCTTGTCAAATTCCAGGATGTACAAAGCGCTACACAGACCCAAGCTCCCTC
AGAAAGCACGTGAAGGCACATTCTTCCCGAGAGCAGCAAGCAAGGAAAAAG
INTRON 6 - 7 28,350,028 28,354,205 4,178
GTAAATTTCAAAGGGAGTTTTTTTT..........CAGTACAGAGTTGCCTTTTTAACAG
7 EXON 7 28,349,573 28,350,027 0 - 455
CTCACAAACATCTGTGCATCGTCCCATTGGTGATAAACAGTGATAAGCGACTAACTTCAC
ACCTCAGAACGCTGGCAAGACACATCTGGATCCCATCCCCCTCAGCCGAGAGGAGATCAG
TTCCAAGAAAGATGGTGGGAGATGCTCTTGAAAGAAAAGCGTTCGGCGAACAGTAGTGAC
GAGAAGAAGTGCTTATGTTTTAATGGAAAACATCCTTATACACCATCACAAATTCTAACA
CATATCCACAACTATTGCTACTTGGAACAAGTTGCCTGGCAGCTTCGATGGCATCCTAGC
CCAGCACAATAGTGCTTTCATGTTTGAAGTATGCTGTTGCTTCTGTATGTGGATTGGGGC
TCAGAATAATCCATACTTGTGGGAGTTGGTGGGGGGCTTGAGGGAGATTGTCTTTCGTTG
GAAAGACCAGTGAATAAAATGAGCGTGTGTTCTTC
3' upstream sequence
ATACCATCAGAAGAACTGCATTCGTCTTTACAGGAGAATATGTGCTGCCACCCCTGGGAT
GATGGCCCAGCGTCTTAACTATAGTAAAAGTTGTTGCCCATGCCCTGCTCCTGAAACACA
TTCCGTGGCGATGTTATTAGATAGGTTTTATTTGGTTGATGTTGTTCTCATTTTTAGATT
TATTTTTGGTTTGCATGTGTAAATGCTTTTACCTGGTAAGTGCACCACTTTTCCTGGTTT
GGAGGTCAGAAAAGGATATTGGGTACACTGGACTGGAGTTAAGGTTGTTTTTGAGCCACC
ATGTGGGGAGCCGGAACTGAACCCAAGTCCCCAGCACTAGCAGCAAATGGACTAACCGTC
CTTAAGGAAGCCGGCACACAGAAGAACCACTTCCTTCTCAGCACCTTCATGAAGCAGCTT
TTCAAGTAGACATTTTACAAGGGTCTCCAAAGTTTCCTTTATCACATGTTGTAAGTATTT
ATTGATTACCTATTGTGTGCTGGACACTGGTTAGAGCCATGGAAGCAAACGCATGGAGGA
GATGTGTTTTCTGCTCTCTTCGGTTGGCATTCCGATGAAGGTGAGCACATGAGAAACTGG
TGTGACATTAGTGCAAATAGGGAAGACACAGAAAGGCTGATAATGGGATGGGTGTGAGCT
GAGATGGTCCAGGAACTGAGCAGAGGGGCAAAGATATTACGTCTTTAAAAATGAGGGAAA
AATACATTGGTTGCAGTATTCTAGAAAACCACTGATTCGGTCCAGATATTGTACTTTCCT
GTTTGAGCTGACTTTCAAAGAACCCTGCTAGCACTTTTTGAATCGCCTGGCTCATGTTAG
GGTTTTTGTTTGATCTGTGTGTTTATTTCTTTGTTTTGAGACAGGGTACCACTGTGTAGC
TCAGGCTGGCCTTGAACTTGGGATCTTACTTACTGCTCTAGCATTCTCAGTTCTGGGACC
ACACATAGAAGTGCTGTAGCTTTAGCTTAGTTGCCCCTTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Glis3 (ENSMUSG00000052942)
Transcript ID ENSMUST00000112612
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 672 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information