MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Rorb (ENSMUSG00000036192)

Cross Reference

MGI_trans_name	Rorb-002
OTTP	OTTMUSP00000027391
OTTT	OTTMUST00000056886
RefSeq_mRNA	NM_001289921.1
RefSeq_peptide	NP_001276850
UCSC	uc008gyd.2
UniParc	UPI00005A9601
Vega_transcript	OTTMUST00000056886, Rorb-002
Vega_translation	222451, OTTMUSP00000027391

Definition

protein_id:ENSMUSP00000108447
translation:

MSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLN
TETGGTYANGHVIDLPKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFT
YSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKS
REALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPL
NNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAW
LIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSH
PDIVNTLFPPLYKELFNPDCAAVCK

Chromosome

Length
Position(start - end)

45,473
18,937,880 - 18,983,354

Orient to Chromosome

minus

Link

Location : (19:18937880-18983354)
/

Detail Map

name	Rorb (ENSMUSG00000036192)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Rorb note : RAR-related orphan receptor beta [Source:MGI Symbol;Acc:MGI:1343464]

name	Rorb (ENSMUSG00000036192)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000040153

name	Rorb (ENSMUSG00000036192)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000112832

name	Rorb (ENSMUSG00000036192)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000112828

name	Rorb (ENSMUSG00000036192) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS37933.1 Uniprot/SWISSPROT:Q8R1B8 RefSeq_peptide:NP_666207 RefSeq_mRNA:NM_146095.4 Vega_transcript:OTTMUST00000056531 Vega_transcript:Rorb-001 UCSC:uc008gyc.2 EMBL:AB258405 EMBL:BC024842 EMBL:BC058269 EMBL:DQ779923 EMBL:DQ779924 GO:GO:0003700 GO:GO:0003700 GO:GO:0003707 GO:GO:0004879 GO:GO:0005515 GO:GO:0005634 GO:GO:0006351 GO:GO:0007186 GO:GO:0007420 GO:GO:0007601 GO:GO:0007623 GO:GO:0008134 GO:GO:0008270 GO:GO:0008502 GO:GO:0009725 GO:GO:0030522 GO:GO:0035881 GO:GO:0042462 GO:GO:0042752 GO:GO:0043401 GO:GO:0043565 GO:GO:0045668 GO:GO:0045892 GO:GO:0045893 GO:GO:0046548 GO:GO:0046549 GO:GO:0060041 GO:GO:0071300 MGI_trans_name:Rorb-001 Vega_translation:222450 Vega_translation:OTTMUSP00000027181 goslim_goa:GO:0001071 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0004871 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0007165 goslim_goa:GO:0008134 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0030154 goslim_goa:GO:0034641 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0048856 goslim_goa:GO:0050877 protein_id:AAH24842.2 protein_id:AAH58269.1 protein_id:ABG77269.1 protein_id:ABG77270.1 protein_id:BAE93688.1 OTTP:OTTMUSP00000027181 OTTT:OTTMUST00000056531 Reactome:R-MMU-212436 Reactome:R-MMU-383280 Reactome:R-MMU-74160 UniParc:UPI00001ECD12
definition	note : transcript_id=ENSMUST00000040153 protein_id : ENSMUSP00000047597 translation : MCENQPKTKADGTAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDLPKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCAAVCK

name	Rorb (ENSMUSG00000036192) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS37932.1 Uniprot/SWISSPROT:Q8R1B8 RefSeq_peptide:NP_001036819 RefSeq_mRNA:NM_001043354.2 Vega_transcript:OTTMUST00000057552 Vega_transcript:Rorb-005 UCSC:uc008gye.2 EMBL:AB258405 EMBL:BC024842 EMBL:BC058269 EMBL:DQ779923 EMBL:DQ779924 GO:GO:0003700 GO:GO:0003707 GO:GO:0004879 GO:GO:0005515 GO:GO:0005634 GO:GO:0006351 GO:GO:0007601 GO:GO:0008134 GO:GO:0008270 GO:GO:0030522 GO:GO:0035881 GO:GO:0042462 GO:GO:0042752 GO:GO:0043401 GO:GO:0043565 GO:GO:0045668 GO:GO:0045892 GO:GO:0045893 GO:GO:0046548 GO:GO:0046549 GO:GO:0060041 GO:GO:0071300 MGI_trans_name:Rorb-005 Vega_translation:222452 Vega_translation:OTTMUSP00000027765 goslim_goa:GO:0001071 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0004871 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0007165 goslim_goa:GO:0008134 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0030154 goslim_goa:GO:0034641 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0048856 goslim_goa:GO:0050877 protein_id:AAH24842.2 protein_id:AAH58269.1 protein_id:ABG77269.1 protein_id:ABG77270.1 protein_id:BAE93688.1 OTTP:OTTMUSP00000027765 OTTT:OTTMUST00000057552 Reactome:R-MMU-212436 Reactome:R-MMU-383280 Reactome:R-MMU-74160 UniParc:UPI00003A934A
definition	note : transcript_id=ENSMUST00000112832 protein_id : ENSMUSP00000108451 translation : MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDLPKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCAAVCK

name	Rorb (ENSMUSG00000036192) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_001276850 RefSeq_mRNA:NM_001289921.1 Vega_transcript:OTTMUST00000056886 Vega_transcript:Rorb-002 UCSC:uc008gyd.2 MGI_trans_name:Rorb-002 Vega_translation:222451 Vega_translation:OTTMUSP00000027391 OTTP:OTTMUSP00000027391 OTTT:OTTMUST00000056886 UniParc:UPI00005A9601
definition	note : transcript_id=ENSMUST00000112828 protein_id : ENSMUSP00000108447 translation : MSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDLPKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCAAVCK

name
type	STS
link
xref	UniSTS_NUM:209447 UniSTS:BB387589 WI_MRC-RH:1376453
definition	note : map_weight=1 standard_name : BB387589

name
type	misc_feature
link
xref
definition	note : contig AC140458.3 7..186016(1)

name
type	misc_feature
link
xref
definition	note : contig AC116594.4 1..107152(-1)

name	Rorb (ENSMUSG00000036192)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000056887 Vega_transcript:OTTMUST00000056887 UCSC:uc008gyf.1 MGI_trans_name:Rorb-003 OTTT:OTTMUST00000056887
definition	note : retained_intron note : transcript_id=ENSMUST00000149635

name	Rorb (ENSMUSG00000036192)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000056888 Vega_transcript:OTTMUST00000056888 UCSC:uc008gyf.1 MGI_trans_name:Rorb-004 OTTT:OTTMUST00000056888
definition	note : retained_intron note : transcript_id=ENSMUST00000147907

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rorb (ENSMUSG00000036192)
Transcript ID	ENSMUST00000112828

Reports
substitution
cSNPs	6
Insertion	53
Deletion	55
SNPs	+1kb 19001330(c.-17976A>G), 19001405(c.-18051T>C), 19001416(c.-18062A>G), 19001463(c.-18109G>A), 19001535(c.-18181G>A), 19001669(c.-18315T>C), 19001679(c.-18325G>C), 19001723(c.-18369G>A), 19001776(c.-18422G>A), 19001834(c.-18480C>T), 19001939(c.-18585C>A), 19001940(c.-18586T>G), 19001978(c.-18624A>G), 19002086(c.-18732A>C), 19002153(c.-18799C>T), 19002329(c.-18975A>T), 19002354(c.-19000G>C), 19002361(c.-19007C>T), 19002382(c.-19028T>C), 19002509(c.-19155G>T), 19002524(c.-19170C>T), 19002529(c.-19175G>A), 19002560(c.-19206G>A), 19002590(c.-19236G>A), 19002595(c.-19241T>C), 19002603(c.-19249A>C), 19002646(c.-19292G>C), 19002662(c.-19308C>T), 19002730(c.-19376T>G), 19002883(c.-19529T>C), 19002899(c.-19545T>C), 19002920(c.-19566C>A), 19002927(c.-19573T>G), 19002937(c.-19583C>T), 19002955(c.-19601C>T), 19002967(c.-19613T>G), 19003046(c.-19692A>G), 19003157(c.-19803C>A), 19003315(c.-19961C>A), 19003358(c.-20004A>G), 19003362(c.-20008A>G), 19003366(c.-20012A>G), 19003370(c.-20016A>G), 19003630(c.-20276G>A), 19003776(c.-20422G>A), 19003790(c.-20436A>T), 19003824(c.-20470A>G), 19003834(c.-20480G>A), 19003864(c.-20510G>A), 19003915(c.-20561A>G), 19003964(c.-20610A>G), 19003976(c.-20622A>G), 19004104(c.-20750G>A), 19004135(c.-20781T>G), 19004171(c.-20817G>C), 19004177(c.-20823G>C), 19004417(c.-21063C>T), 19004460(c.-21106G>A), 19004513(c.-21159G>T), 19004651(c.-21297T>C), 19004661(c.-21307A>C), 19004809(c.-21455T>A), 19004923(c.-21569G>A), 19004943(c.-21589G>A), 19004952(c.-21598T>C), 19004990(c.-21636A>G), 19005119(c.-21765G>C), 19005239(c.-21885A>G), 19005494(c.-22140C>T), 19005499(c.-22145T>C), 19005621(c.-22267T>A), 19005686(c.-22332T>C), 19005703(c.-22349A>G), 19005720(c.-22366C>A), 19005754(c.-22400C>T), 19005775(c.-22421A>G), 19005812(c.-22458T>C), 19005925(c.-22571G>A), 19005928(c.-22574C>A), 19005996(c.-22642A>G), 19006047(c.-22693G>A), 19006062(c.-22708G>A), 5'UTR CDS 18938009(c.1029G>A), 18952206(c.954G>T), 18955136(c.795G>A), 18962085(c.477A>G), 18977732(c.264G>A), 18977762(c.234C>T), 3'UTR 18936792(c.1088A>C), 18936795(c.1085A>G), 18936909(c.971A>G), 18937799(c.81G>T), INTRON 18938342(c.1003-307C>T), 18938776(c.1003-741T>C), 18939188(c.1003-1153G>A), 18939500(c.1003-1465A>T), 18939784(c.1003-1749T>G), 18939947(c.1003-1912C>T), 18939981(c.1003-1946G>A), 18940126(c.1003-2091C>T), 18940221(c.1003-2186C>A), 18940240(c.1003-2205C>T), 18940701(c.1003-2666G>A), 18940987(c.1003-2952T>C), 18941063(c.1003-3028A>G), 18941113(c.1003-3078G>T), 18941147(c.1003-3112C>T), 18941182(c.1003-3147A>G), 18941268(c.1003-3233G>A), 18941272(c.1003-3237T>C), 18941274(c.1003-3239T>C), 18941408(c.1003-3373C>T), 18941575(c.1003-3540G>A), 18942072(c.1003-4037G>C), 18942077(c.1003-4042G>T), 18942078(c.1003-4043A>G), 18942101(c.1003-4066C>T), 18942149(c.1003-4114T>C), 18942190(c.1003-4155C>T), 18942192(c.1003-4157T>G), 18942240(c.1003-4205A>G), 18942502(c.1003-4467G>A), 18942676(c.1003-4641G>A), 18942682(c.1003-4647A>G), 18942773(c.1003-4738G>A), 18942778(c.1003-4743A>G), 18942924(c.1003-4889T>C), 18944082(c.1003-6047C>T), 18944100(c.1003-6065T>A), 18944361(c.1003-6326T>C), 18944527(c.1003-6492A>C), 18944567(c.1003-6532C>T), 18944571(c.1003-6536A>T), 18944573(c.1003-6538A>C), 18944574(c.1003-6539T>A), 18944628(c.1003-6593T>A), 18944853(c.1003-6818G>A), 18944857(c.1003-6822C>A), 18945197(c.1002+6961C>T), 18945217(c.1002+6941T>G), 18945418(c.1002+6740T>C), 18945419(c.1002+6739T>C), 18945453(c.1002+6705C>G), 18945478(c.1002+6680T>G), 18945487(c.1002+6671G>C), 18945809(c.1002+6349C>T), 18945903(c.1002+6255C>A), 18946030(c.1002+6128C>G), 18946212(c.1002+5946G>A), 18946229(c.1002+5929G>C), 18946235(c.1002+5923G>A), 18946261(c.1002+5897A>T), 18946388(c.1002+5770T>C), 18946398(c.1002+5760T>C), 18946404(c.1002+5754C>T), 18946409(c.1002+5749G>A), 18946425(c.1002+5733C>T), 18946463(c.1002+5695T>A), 18946480(c.1002+5678G>A), 18946546(c.1002+5612A>T), 18946570(c.1002+5588C>A), 18946597(c.1002+5561T>C), 18946635(c.1002+5523A>G), 18946663(c.1002+5495C>A), 18946670(c.1002+5488T>C), 18946746(c.1002+5412G>A), 18946807(c.1002+5351T>C), 18946940(c.1002+5218A>G), 18946983(c.1002+5175C>A), 18947014(c.1002+5144C>T), 18947022(c.1002+5136C>G), 18947225(c.1002+4933A>G), 18947271(c.1002+4887A>G), 18947362(c.1002+4796G>A), 18947594(c.1002+4564G>A), 18947624(c.1002+4534T>C), 18947629(c.1002+4529G>A), 18947778(c.1002+4380G>A), 18947824(c.1002+4334G>A), 18947827(c.1002+4331T>C), 18947832(c.1002+4326C>T), 18948462(c.1002+3696C>A), 18948675(c.1002+3483T>C), 18948806(c.1002+3352C>A), 18948932(c.1002+3226G>A), 18949101(c.1002+3057A>G), 18949125(c.1002+3033A>G), 18949333(c.1002+2825C>A), 18949378(c.1002+2780C>A), 18949397(c.1002+2761T>C), 18949403(c.1002+2755A>C), 18949928(c.1002+2230T>A), 18949943(c.1002+2215A>G), 18949971(c.1002+2187C>T), 18949975(c.1002+2183G>A), 18949977(c.1002+2181A>G), 18949980(c.1002+2178T>A), 18950020(c.1002+2138C>T), 18950025(c.1002+2133C>T), 18950054(c.1002+2104A>T), 18950066(c.1002+2092C>T), 18950072(c.1002+2086A>G), 18950120(c.1002+2038T>C), 18950129(c.1002+2029C>T), 18950367(c.1002+1791A>G), 18950421(c.1002+1737C>T), 18950578(c.1002+1580C>G), 18950583(c.1002+1575C>T), 18950658(c.1002+1500A>G), 18950737(c.1002+1421C>G), 18950739(c.1002+1419C>T), 18950822(c.1002+1336G>A), 18950904(c.1002+1254C>T), 18950943(c.1002+1215G>C), 18950978(c.1002+1180A>G), 18951130(c.1002+1028T>C), 18951139(c.1002+1019T>G), 18951245(c.1002+913T>C), 18951258(c.1002+900G>C), 18951451(c.1002+707C>T), 18951567(c.1002+591G>A), 18951590(c.1002+568T>G), 18951648(c.1002+510A>G), 18951673(c.1002+485G>A), 18951721(c.1002+437A>G), 18951768(c.1002+390G>A), 18951858(c.1002+300T>C), 18951862(c.1002+296G>A), 18951903(c.1002+255G>T), 18952117(c.1002+41C>T), 18952345(c.890-75G>A), 18952513(c.890-243A>C), 18953139(c.890-869A>G), 18953159(c.890-889A>G), 18953309(c.890-1039C>G), 18953316(c.890-1046A>G), 18953421(c.890-1151G>T), 18953480(c.890-1210G>A), 18953579(c.890-1309G>A), 18953708(c.889+1334G>A), 18954108(c.889+934T>C), 18954121(c.889+921T>C), 18954183(c.889+859G>C), 18954202(c.889+840C>T), 18954285(c.889+757C>T), 18954354(c.889+688C>T), 18954395(c.889+647T>C), 18954441(c.889+601T>C), 18954523(c.889+519C>G), 18954526(c.889+516C>T), 18954539(c.889+503G>A), 18954578(c.889+464A>G), 18954609(c.889+433G>A), 18954627(c.889+415T>A), 18954732(c.889+310C>T), 18954788(c.889+254T>C), 18955020(c.889+22G>A), 18955032(c.889+10C>T), 18955164(c.779-12T>C), 18955201(c.779-49G>A), 18955232(c.779-80G>A), 18955283(c.779-131G>A), 18955334(c.779-182A>G), 18955341(c.779-189C>A), 18955360(c.779-208G>A), 18955364(c.779-212C>T), 18955406(c.779-254C>G), 18955431(c.779-279T>C), 18955571(c.779-419A>G), 18955629(c.779-477T>G), 18955739(c.779-587T>A), 18955764(c.779-612A>G), 18955767(c.779-615C>A), 18955921(c.779-769A>C), 18955924(c.779-772C>T), 18955964(c.779-812T>A), 18956011(c.779-859T>C), 18956149(c.779-997T>C), 18956191(c.778+1036G>A), 18956604(c.778+623A>G), 18956655(c.778+572A>G), 18956707(c.778+520A>G), 18956722(c.778+505G>A), 18956769(c.778+458C>T), 18956778(c.778+449C>A), 18956793(c.778+434A>T), 18956812(c.778+415G>A), 18956820(c.778+407A>C), 18956874(c.778+353G>A), 18956939(c.778+288T>A), 18956983(c.778+244C>T), 18956997(c.778+230C>G), 18957033(c.778+194A>G), 18957093(c.778+134A>C), 18957104(c.778+123C>G), 18957107(c.778+120A>G), 18957162(c.778+65G>C), 18957177(c.778+50C>T), 18957181(c.778+46T>C), 18957371(c.671-37C>T), 18957466(c.671-132C>T), 18957600(c.671-266A>G), 18957666(c.671-332G>A), 18957675(c.671-341A>G), 18957724(c.671-390T>A), 18957730(c.671-396T>C), 18957736(c.671-402C>T), 18957800(c.671-466A>G), 18957804(c.671-470C>T), 18957814(c.671-480C>G), 18957823(c.671-489A>C), 18957863(c.671-529A>G), 18958114(c.671-780G>C), 18958131(c.671-797A>G), 18958543(c.671-1209T>C), 18958579(c.671-1245G>A), 18958670(c.671-1336G>A), 18958699(c.671-1365A>G), 18959207(c.670+1202T>C), 18959385(c.670+1024G>C), 18959396(c.670+1013T>G), 18959441(c.670+968C>T), 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18992968(c.-216+1300C>T), 18992993(c.-216+1275G>A), 18993040(c.-216+1228A>G), 18993239(c.-216+1029G>A), 18993375(c.-216+893C>G), 18994150(c.-216+118A>G), 18994259(c.-216+9A>G), 18994788(c.-268-468G>A), 18995132(c.-268-812A>G), 18995244(c.-268-924G>C), 18995251(c.-268-931A>G), 18995444(c.-268-1124A>G), 18995792(c.-268-1472C>T), 18995990(c.-268-1670T>C), 18996175(c.-268-1855C>G), 18996335(c.-268-2015G>A), 18996381(c.-268-2061G>A), 18996385(c.-268-2065G>A), 18996392(c.-268-2072T>C), 18996396(c.-268-2076C>T), 18996400(c.-268-2080C>T), 18996445(c.-268-2125C>T), 18996752(c.-268-2432G>T), 18997154(c.-268-2834G>T), 18997234(c.-268-2914G>A), 18997268(c.-268-2948A>T), 18997482(c.-268-3162C>T), 18997546(c.-268-3226C>T), 18997583(c.-268-3263G>A), 18997733(c.-269+3274C>T), 18997815(c.-269+3192G>A), 18997967(c.-269+3040C>T), 18998171(c.-269+2836T>C), 18998573(c.-269+2434A>G), 18999597(c.-269+1410A>G), 18999681(c.-269+1326A>G), 18999689(c.-269+1318C>T), 18999759(c.-269+1248T>C), 18999763(c.-269+1244T>A), 18999768(c.-269+1239T>C), 18999774(c.-269+1233C>T), 19000174(c.-269+833T>C), 19000190(c.-269+817G>C), 19000254(c.-269+753G>A), 19000255(c.-269+752A>C), 19000258(c.-269+749C>T), 19000261(c.-269+746A>G), 19000272(c.-269+735C>T), 19000301(c.-269+706T>C), 19000470(c.-269+537A>G), 19000574(c.-269+433A>G), 19000644(c.-269+363T>C), 19000674(c.-269+333T>C), 19000699(c.-269+308G>C), 19000868(c.-269+139T>A), -1kb 18932467(c.5413A>T), 18932623(c.5257G>T), 18932982(c.4898C>T), 18933172(c.4708T>C), 18933310(c.4570G>A), 18933352(c.4528T>A), 18933383(c.4497T>C), 18933419(c.4461G>A), 18933474(c.4406C>T), 18933675(c.4205A>G), 18933686(c.4194A>C), 18933941(c.3939T>C), 18933950(c.3930C>T), 18934288(c.3592C>T), 18934361(c.3519G>A), 18934690(c.3190T>G), 18934697(c.3183A>G), 18935497(c.2383A>G), 18935526(c.2354T>C), 18935666(c.2214A>C), 18936037(c.1843A>G), 18936438(c.1442T>C),
Insertions	+1kb 19001286 (c.-17933_-17932insTT), 19001955 (c.-18602_-18601insA), 19004258 (c.-20905_-20904insAGGGC), 19004815 (c.-21462dupA), 5'UTR CDS 3'UTR INTRON 18942411 (c.1003-4377dupC), 18942759 (c.1003-4728_1003-4725dupTTTT), 18944574 (c.1003-6540_1003-6539insAC), 18948579 (c.1002+3578dupA), 18950147 (c.1002+2010_1002+2011insT), 18954627 (c.889+414_889+415insAA), 18955941 (c.779-790_779-789insT), 18958511 (c.671-1178dupA), 18959742 (c.670+666dupT), 18962610 (c.416-465_416-464insAGGT), 18962825 (c.416-683_416-680dupAAAA), 18963782 (c.416-1637dupT), 18963891 (c.416-1746_416-1745insTT), 18963951 (c.416-1806_416-1805insAA), 18967564 (c.416-5419dupA), 18967856 (c.416-5711_416-5710insGTCGG), 18967903 (c.416-5758dupA), 18968958 (c.416-6813dupT), 18970168 (c.415+7411_415+7412dupTT), 18970377 (c.415+7203_415+7204insTA), 18970699 (c.415+6881_415+6882insTGGA), 18970707 (c.415+6873_415+6874insTA), 18971087 (c.415+6492_415+6493dupTG), 18971981 (c.415+5599_415+5600insT), 18974554 (c.415+3026dupT), 18975994 (c.415+1586dupC), 18975999 (c.415+1581_415+1582insC), 18976442 (c.415+1138_415+1139insA), 18977351 (c.415+226_415+229dupGCTA), 18978723 (c.14-742dupG), 18978869 (c.14-888_14-887insT), 18979578 (c.14-1597_14-1596insTTTTTT), 18983688 (c.-129-209_-129-206dupAGTG), 18985423 (c.-129-1941dupA), 18985514 (c.-129-2032_-129-2031insGG), 18986393 (c.-130+1637dupG), 18986750 (c.-130+1280_-130+1281insA), 18986763 (c.-130+1267dupA), 18986772 (c.-130+1258_-130+1259insA), 18996132 (c.-268-1813_-268-1812insCC), 19000320 (c.-269+686_-269+687insG), 19000610 (c.-269+396_-269+397insTTTG), 19000675 (c.-269+331_-269+332insAA), 19000679 (c.-269+327_-269+328insAA), 19000769 (c.-269+237dupT), 19000772 (c.-269+234_-269+235insT), -1kb 18932771 (c.5108dupC), 18933863 (c.4016dupT), 18934384 (c.*3495dupT),
Deletions	+1kb 19002135 (c.-18782delT), 19002681 (c.-19328delA), 19004291 (c.-20938delG), 19004305 (c.-20952delG), 19004501 (c.-21151_-21148delCGGG), 5'UTR CDS 3'UTR INTRON 18938224 (c.1003-194_1003-190delTTTTT), 18940846 (c.1003-2815_1003-2812delTTTT), 18941201 (c.1003-3167delT), 18943379 (c.1003-5345delG), 18943889 (c.1003-5862_1003-5855delGTCTGTCT), 18946448 (c.1002+5709delT), 18947000 (c.1002+5157delC), 18947693 (c.1002+4464delA), 18950683 (c.1002+1472_1002+1474delAGT), 18951966 (c.1002+183_1002+191delTTGCATTTG), 18953729 (c.889+1312delT), 18954705 (c.889+336delT), 18954711 (c.889+330delT), 18955998 (c.779-847delC), 18959286 (c.670+1122delC), 18959912 (c.670+496delT), 18960843 (c.538-303delA), 18961050 (c.538-515_538-510delCCACAC), 18963004 (c.416-859delA), 18964466 (c.416-2321delT), 18964543 (c.416-2399_416-2398delAA), 18964857 (c.416-2717_416-2712delGTTGCC), 18965891 (c.416-3746delT), 18966336 (c.416-4192_416-4191delTC), 18971853 (c.415+5724_415+5727delAGCA), 18973428 (c.415+4152delG), 18974040 (c.415+3540delA), 18975043 (c.415+2536_415+2537delAG), 18975429 (c.415+2151delT), 18975960 (c.415+1616_415+1620delAAAAC), 18976483 (c.415+1096_415+1097delAG), 18978112 (c.14-131delA), 18979231 (c.14-1253_14-1250delATCT), 18979435 (c.14-1455_14-1454delGC), 18979594 (c.14-1614_14-1613delAA), 18982215 (c.13+1126delT), 18982683 (c.13+657_13+658delTC), 18985454 (c.-129-1972delA), 18986580 (c.-130+1450delT), 18988407 (c.-215-292delG), 18988609 (c.-215-499_-215-494delGACAGA), 18993379 (c.-216+887_-216+888delAA), 18996021 (c.-268-1703_-268-1702delAA), 18997833 (c.-269+3165_-269+3173delGCACAGGTT), 18999876 (c.-269+1130delA), 19000627 (c.-269+376_-269+379delCTAA), -1kb 18933152 (c.4726_4727delGC), 18933844 (c.4035delG), 18934640 (c.3238_3239delCC), 18934898 (c.2980_*2981delAA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	6
non-synonymous num	0
synonymous substitutions	18938009 (p.Thr343Thr), 18952206 (p.Leu318Leu), 18955136 (p.Val265Val), 18962085 (p.Glu159Glu), 18977732 (p.Gln88Gln), 18977762 (p.Ser78Ser),
non-synonymous substitutions
B6 transcript (ENSMUST00000112828)	MSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLN TETGGTYANGHVIDLPKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFT YSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKS REALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPL NNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAW LIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSH PDIVNTLFPPLYKELFNPDCAAVCK*
MSMv4 transcript	MSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLN TETGGTYANGHVIDLPKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFT YSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKS REALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPL NNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAW LIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSH PDIVNTLFPPLYKELFNPDCAAVCK*
homology	100.00 (386 / 386)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rorb (ENSMUSG00000036192)
Transcript ID	ENSMUST00000112828


..........TTAGCTTAGTAACTAGTGAGTTTTCCGGAACCCTTTCTTGTATATCTTTA
ACTTACATTAGCACATCCTCTACCTTCTCCTGTGCCTGCTCCCAACCCCAATCTTTCCCA
ACCTCCCATTCCCCAGCAAGACCCAAGGAGCATCTTAGGAGAGGAGACAAAGGCACGTTA
AGAGCTAGAGGATAAGGATGCATGTTGAGAAATGCCAAGTTGTAGACATGGCAAGGTTAC
AGCGCCCATGACCCCACAGCAGCCATGGTTGCCTAGGCAAGATCTACTCCATCTCAAGCA
GGTCAAAATTCCCACAAAAATAGGATAGGTAACCTGCAGGCCTTACCACTTACCCAGCAA
CAAGGGCAAAGAAAGGAAACTTTCTGGGTATTTTCATCGCTCTCATTTTACAAGAGGAGA
CACTGAGGTGCTCCAATAGAATAGAGTCCTTTAGACTTCGGGGTTAGTGTGAAGTCCCTG
TCCTGGTACCAGGCTGTATTGCAGGTAGGCTGTAAGATATACTCATTTTCTTCAACTATA
AAGTGTCTCTGTGTCCCATTAATTATCCCTCAGACAGTTATAATCCAATGCTAGGTAATC
CTTATACACGAGGCCTCAGTAAAAGGGGCAAAATAATTACAAACCACTGCTGAATGAAGT
CTGCACTAGACTGTCAGGGTCACAGCTTGTCTTGAGATATTTGTCAGGTGCGCACTGGGT
CCCGCTCCAGAAGGATGAAAACAAAGGGGACTTGAAGTACAGAAAGAATACACAGCAACG
TGATTCATGGGGAGGGTGGAGGATGTTTAAACTGCTATTTTACAATTTAGCAAATGTACT
CGAGTAAATATCAAAAAGAAGAAAGGAATTTTTTCTTCTGTGCCTTCCTGGGGTGAGGAA
GCCTCTCTTTCACCCTTACTTAATGAAACGAAGCCAGTTGATGCCTCTAACTCTTCTTTC
GTCTAATCTCATTAATGCAGTCTGTTGGGATTCTGGTTGTGGGATAACAT
AGGGGCAGTCCTCAGACCTCAAGTGAAACGGGGAGATATTTTTCAGTCAGGCTTTTCACTGCTCCGTCAGAATGTGTGAGAACCAGCCCAAAACTAAAGCTGACGGCACTG
GTGAGTTGCGCTTTTTCTTCTGTCT..........TTTTTCTATTGTTTCTGTTCTCAAG
AGCAAGCATAGCACGCAGCACTCTGTGGGCAATTACACGAAGATCCATCAAAG
GTAAACCAGTCCCAGTGTGATTCCC..........CATTCTTTTGTTTCTCCTCTTTCAG
CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG
GTAAGGACTTCCGCATTGTGATGGT..........CCTTGCTTTCTCTTTTCCTCTTTAG
GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG
GTAAGCCTCTCCCTTTCTGTTCCTT..........TCTTTTGCTCTTCTTTCCGTCCCAG
CTGTAAAGTTCGGGAGGATGTCCAAGAAGCAGCGGGACAGCCTGTATGCTGAGGTGCAGAAGCATCAGCAAAGGCTGCAGGAGCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGCCCTCGCCAGGGTGTACAGCAGCAGCATTAGCAATGGCCTCAGCAACCTGAACACCGAGACCGGCGGCACATACGCCAACGGGCACGTCATTGACCTGCCCAAGTCTGAAGGTTATTACAGCATAGATTCCGGTCAACCGTCTCCCGATCAGTCAGGACTGGACATGACTGGGATCAAACAGATAAAGCAAGAACCTATCTATGACCTCACATCTGTACCCAACTTGTTTACCTATAGCTCTTTCAACAACGGGCAGTTAGCTCCCGGGATAACAATGTCTGAGATCG
GTAAGTCCGAGTCTTCCCCAAGTTT..........AAATTGCTTACCCTTTTTCTCATAG
ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAGCTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG
GTACTCCAAGAACCATGGGGAACAG..........AAGGGCTGTGTCCTCTCTGCTTCAG
TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG
GTGAGCCTTCTGACTTGTGAGGGTC..........CATTTTTAATTATTTTATCTCATAG
GTTGCTTGGAAGTGGTTTTAGTGAGAATGTGTCGTGCCTTCAACCCATTAAACAACACTGTTCTGTTTGAAGGAAAATATGGAGGAATGCAAATGTTCAAAGCCTTAG
GTAAGTTTCCCTTGGATGACAACAA..........GTTTAAGATTTCTCCTTCCTTTTAG
GTTCGGATGACCTAGTAAATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGCTGACTGAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAG
GTAGGAAGGTGCCGGTCCCTTACCT..........ATTCTTCGGCTTTTCCCCTTGTCAG
ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTTCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG
GTAAGTCTTCAAGTCACAGACCTGC..........CTCCCTCTGTCTCTGTGTTCTGCAG
TTAATAGCCAAGATACCAACTATCACAGCAGTCTGCAACTTGCATGGGGAGAAGCTGCAGGTATTTAAGCAGTCTCATCCAGACATAGTGAATACACTGTTTCCTCCATTGTACAAGGAGCTCTTTAATCCTGACTGTGCTGCGGTCTGCAAATGAAGGGGACGAGAACTCTCAGAGTCATGGAATGCATCGCCGTTAAGACAAAAGCAATGTGTTCATGGGGACTTAAGGAAAATTTCACTACTGCAACATTAGGAATGTCCTGCACTTAATAGAAATATTTTTCACCGCTACAGTTTGAAGAATGTAAATATGCACCTGAGTGGGGCTCTTTTGTTTGTTCGTTTGTTGTTTGTTTGTTTTTGAAATGATCATAAATATACAAATATAGGACACTGGGTGTTATCTTTTTTAATTTTATTCGGGTATGTTTTGGAGACAACTGTTTATAGAATTTTATTGTAGATATATACACAAACAGAGCCGTACTTTCCATGATTACTCTTCCCGTTGATTGATTGTTCGACTCTAATTTAAGACGATTCCACTTACTAGGCTTTACCTATTTCTATGTTTTTAGGTAGTTGATGCATGTGCAAATTCGTAACTAACTGTCTTGGAAAGTACTGTGCATGTATGTAATGAGTATATAATATGTAAGAGTATTATATATGACTATTACGTATTCATGCACTGTGGCTTAAAATACCATGCCCACTAGCAATGGAGGTTCAGTCAGGCTTTCATGTGATTTGCTGTTGTTATATGTTACTTTTATGTTAGACAATCAGGGTTTTCATTTCCAGCCAGAGTTTTTATCCATCCATAACAACATGATAGGACCCATGCAAAAGGAAATCTACAAAAGAATCGGGGTAACACATAATTGTTCTTTTAAAAGCTCCATTTCTATCAATTACTTCAAAGCCCCATCAAGATGGCACATACCGGGAAGAGGGGAAGCCAAAAGGATTTGAAGCCACTTTCCTGTTTTATAGACCAGATAATGATATTGTCTATTTATTACCATATTACAAAATATTGAGGTTCCTCCACATTGGATTTGGAATCCAATTCTGAATGAAACTTCACTTTGGTGGTTATAATTTCTTCAAGACAACAAAAAGTTCAGTCTATAGATTATCACCACCATCAACGTTTTTAGAAATATTTGACTAGAAGTATAAAACAAGTTCCTTGTACCCATTTTGTGTAGATATTTTCTAACCATTTTCCCAACGAACAAAGAGAAATAGAGCATACAAAGTTAAGAAGTAAATTCACTAAATTATACTCATGGTAATTTGTTAGAAATGAGAAAATAGGCGGGAGCCTGTTTTTTCAACTTCAAAATGCTATATTATAAAATATAGAAAAAATTCAGATTAGAAAACAGTAAATCTTTTGTCTATGGGACTAATATATCCCAATGCCAAAATTCTATCCTACACAGTTATAAATGACATCCTCTAT
TCAAACTGGTTATTTTTTAGCCACTAAAATGTATAGAATGGAACGGCAACCTATACAGGT
TCTTCACCTACTTTCCTACAAAATTAAGCACCAGAAAGGCATGAGTTAGAAGCTATTTGT
TCTCCCTGTTCCTGGAAGGCCTAGGTCTTTAGTATGAACTAGTCTAAGCCACACACACGC
ACGAACATGCACACAGATGACACAGCCACCCACAGACACACACACATACACACACACACA
CACACACACACACACACACACACCGCTTTGTAGAAACTTGGGTCTTTTGGTTTGGGTTTC
TGGGTTTGTTTGTTTGTTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTCATTTTTAGTC
CCTTATGCTCTCTCAAAGTTCTGGATTGAGAGTCATCTTCAGGATGCCTCAGAACTCCAG
TGGATGATCAGAGCACAGTAGTGTTAGTCTTGCCTTTCAGAAAACGGGGGCCTTTCTCAC
CTCATGATTGATGAATTCCAAGCCATTGGGGGAAAACAAAAAGACTTTAAAATAATGAAT
CTCTTTTTCAACCACTGTTATATTCAATTAATTTAACTACATTGAACCAAATTACCTTTG
GTTCTGAGAAGACAGCTGTAGACTGCTTATTATGCTGCTACAGGGACTCAGTTCTTTTTG
GTGTAAATGTCACTCCTGCTAGCTCTTTGTATAAAGAATTAATTCCAAGAGTCATATTTC
CTTCTAATGGAAAGATTACTTTACTGATTGCTAGGAAAACAGGGTAATGGAAGGCACTCA
ATTAAACCAAGCCGTTTCCAAATGCGATATATGTTTTATGATTGGCTTGTGATAGGCAAT
GCTTACTGTGTCTACTTGATGTTCCCCTTTGAGCTTTGAACTCATGTCAAACTTTGTTTT
CATTGTTCTGTTGGCCCAGTGTTTCCCATTGTCAGCCTGA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TTAGCTTAGTAACTAGTGAGTTTTCCGGAACCCTTTCTTGTATATCTTTA ACTTACATTAGCACATCCTCTACCTTCTCCTGTGCCTGCTCCCAACCCCAATCTTTCCCA ACCTCCCATTCCCCAGCAAGACCCAAGGAGCATCTTAGGAGAGGAGACAAAGGCACGTTA AGAGCTAGAGGATAAGGATGCATGTTGAGAAATGCCAAGTTGTAGACATGGCAAGGTTAC AGCGCCCATGACCCCACAGCAGCCATGGTTGCCTAGGCAAGATCTACTCCATCTCAAGCA GGTCAAAATTCCCACAAAAATAGGATAGGTAACCTGCAGGCCTTACCACTTACCCAGCAA CAAGGGCAAAGAAAGGAAACTTTCTGGGTATTTTCATCGCTCTCATTTTACAAGAGGAGA CACTGAGGTGCTCCAATAGAATAGAGTCCTTTAGACTTCGGGGTTAGTGTGAAGTCCCTG TCCTGGTACCAGGCTGTATTGCAGGTAGGCTGTAAGATATACTCATTTTCTTCAACTATA AAGTGTCTCTGTGTCCCATTAATTATCCCTCAGACAGTTATAATCCAATGCTAGGTAATC CTTATACACGAGGCCTCAGTAAAAGGGGCAAAATAATTACAAACCACTGCTGAATGAAGT CTGCACTAGACTGTCAGGGTCACAGCTTGTCTTGAGATATTTGTCAGGTGCGCACTGGGT CCCGCTCCAGAAGGATGAAAACAAAGGGGACTTGAAGTACAGAAAGAATACACAGCAACG TGATTCATGGGGAGGGTGGAGGATGTTTAAACTGCTATTTTACAATTTAGCAAATGTACT CGAGTAAATATCAAAAAGAAGAAAGGAATTTTTTCTTCTGTGCCTTCCTGGGGTGAGGAA GCCTCTCTTTCACCCTTACTTAATGAAACGAAGCCAGTTGATGCCTCTAACTCTTCTTTC GTCTAATCTCATTAATGCAGTCTGTTGGGATTCTGGTTGTGGGATAACAT
1	EXON 1	19,001,007	19,001,117	-	-	111	AGGGGCAGTCCTCAGACCTCAAGTGAAACGGGGAGATATTTTTCAGTCAGGCTTTTCACT GCTCCGTCAGAATGTGTGAGAACCAGCCCAAAACTAAAGCTGACGGCACTG
	INTRON 1 - 2	18,994,321	19,001,006			6,686	GTGAGTTGCGCTTTTTCTTCTGTCT..........TTTTTCTATTGTTTCTGTTCTCAAG
2	EXON 2	18,994,268	18,994,320	-	-	53	AGCAAGCATAGCACGCAGCACTCTGTGGGCAATTACACGAAGATCCATCAAAG
	INTRON 2 - 3	18,988,117	18,994,267			6,151	GTAAACCAGTCCCAGTGTGATTCCC..........CATTCTTTTGTTTCTCCTCTTTCAG
3	EXON 3	18,988,031	18,988,116	-	-	86	CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACG GAGTCATCACGTGTGAAGGCTGCAAG
	INTRON 3 - 4	18,983,484	18,988,030			4,547	GTAAGGACTTCCGCATTGTGATGGT..........CCTTGCTTTCTCTTTTCCTCTTTAG
4	EXON 4	18,983,342	18,983,483	-	1	142	GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAAC TGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTT GCCCTAGGAATGTCAAGAGATG
	INTRON 4 - 5	18,977,983	18,983,341			5,359	GTAAGCCTCTCCCTTTCTGTTCCTT..........TCTTTTGCTCTTCTTTCCGTCCCAG
5	EXON 5	18,977,581	18,977,982	1	1	402	CTGTAAAGTTCGGGAGGATGTCCAAGAAGCAGCGGGACAGCCTGTATGCTGAGGTGCAGA AGCATCAGCAAAGGCTGCAGGAGCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGCCCTCG CCAGGGTGTACAGCAGCAGCATTAGCAATGGCCTCAGCAACCTGAACACCGAGACCGGCG GCACATACGCCAACGGGCACGTCATTGACCTGCCCAAGTCTGAAGGTTATTACAGCATAG ATTCCGGTCAACCGTCTCCCGATCAGTCAGGACTGGACATGACTGGGATCAAACAGATAA AGCAAGAACCTATCTATGACCTCACATCTGTACCCAACTTGTTTACCTATAGCTCTTTCA ACAACGGGCAGTTAGCTCCCGGGATAACAATGTCTGAGATCG
	INTRON 5 - 6	18,962,147	18,977,580			15,434	GTAAGTCCGAGTCTTCCCCAAGTTT..........AAATTGCTTACCCTTTTTCTCATAG
6	EXON 6	18,962,025	18,962,146	1	0	122	ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAG AGCTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCA AG
	INTRON 6 - 7	18,960,542	18,962,024			1,483	GTACTCCAAGAACCATGGGGAACAG..........AAGGGCTGTGTCCTCTCTGCTTCAG
7	EXON 7	18,960,409	18,960,541	0	1	133	TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTG GTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTA CTTCTGAAGTCAG
	INTRON 7 - 8	18,957,335	18,960,408			3,074	GTGAGCCTTCTGACTTGTGAGGGTC..........CATTTTTAATTATTTTATCTCATAG
8	EXON 8	18,957,227	18,957,334	1	1	108	GTTGCTTGGAAGTGGTTTTAGTGAGAATGTGTCGTGCCTTCAACCCATTAAACAACACTG TTCTGTTTGAAGGAAAATATGGAGGAATGCAAATGTTCAAAGCCTTAG
	INTRON 8 - 9	18,955,153	18,957,226			2,074	GTAAGTTTCCCTTGGATGACAACAA..........GTTTAAGATTTCTCCTTCCTTTTAG
9	EXON 9	18,955,042	18,955,152	1	1	111	GTTCGGATGACCTAGTAAATGAAGCATTTGACTTTGCGAAGAATCTGTGTTCCTTGCAGC TGACTGAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAG
	INTRON 9 - 10	18,952,271	18,955,041			2,771	GTAGGAAGGTGCCGGTCCCTTACCT..........ATTCTTCGGCTTTTCCCCTTGTCAG
10	EXON 10	18,952,158	18,952,270	1	0	113	ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTG CACTTCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG
	INTRON 10 - 11	18,938,036	18,952,157			14,122	GTAAGTCTTCAAGTCACAGACCTGC..........CTCCCTCTGTCTCTGTGTTCTGCAG
11	EXON 11	18,936,563	18,938,035	0	-	1,473	TTAATAGCCAAGATACCAACTATCACAGCAGTCTGCAACTTGCATGGGGAGAAGCTGCAG GTATTTAAGCAGTCTCATCCAGACATAGTGAATACACTGTTTCCTCCATTGTACAAGGAG CTCTTTAATCCTGACTGTGCTGCGGTCTGCAAATGAAGGGGACGAGAACTCTCAGAGTCA TGGAATGCATCGCCGTTAAGACAAAAGCAATGTGTTCATGGGGACTTAAGGAAAATTTCA CTACTGCAACATTAGGAATGTCCTGCACTTAATAGAAATATTTTTCACCGCTACAGTTTG AAGAATGTAAATATGCACCTGAGTGGGGCTCTTTTGTTTGTTCGTTTGTTGTTTGTTTGT TTTTGAAATGATCATAAATATACAAATATAGGACACTGGGTGTTATCTTTTTTAATTTTA TTCGGGTATGTTTTGGAGACAACTGTTTATAGAATTTTATTGTAGATATATACACAAACA GAGCCGTACTTTCCATGATTACTCTTCCCGTTGATTGATTGTTCGACTCTAATTTAAGAC GATTCCACTTACTAGGCTTTACCTATTTCTATGTTTTTAGGTAGTTGATGCATGTGCAAA TTCGTAACTAACTGTCTTGGAAAGTACTGTGCATGTATGTAATGAGTATATAATATGTAA GAGTATTATATATGACTATTACGTATTCATGCACTGTGGCTTAAAATACCATGCCCACTA GCAATGGAGGTTCAGTCAGGCTTTCATGTGATTTGCTGTTGTTATATGTTACTTTTATGT TAGACAATCAGGGTTTTCATTTCCAGCCAGAGTTTTTATCCATCCATAACAACATGATAG GACCCATGCAAAAGGAAATCTACAAAAGAATCGGGGTAACACATAATTGTTCTTTTAAAA GCTCCATTTCTATCAATTACTTCAAAGCCCCATCAAGATGGCACATACCGGGAAGAGGGG AAGCCAAAAGGATTTGAAGCCACTTTCCTGTTTTATAGACCAGATAATGATATTGTCTAT TTATTACCATATTACAAAATATTGAGGTTCCTCCACATTGGATTTGGAATCCAATTCTGA ATGAAACTTCACTTTGGTGGTTATAATTTCTTCAAGACAACAAAAAGTTCAGTCTATAGA TTATCACCACCATCAACGTTTTTAGAAATATTTGACTAGAAGTATAAAACAAGTTCCTTG TACCCATTTTGTGTAGATATTTTCTAACCATTTTCCCAACGAACAAAGAGAAATAGAGCA TACAAAGTTAAGAAGTAAATTCACTAAATTATACTCATGGTAATTTGTTAGAAATGAGAA AATAGGCGGGAGCCTGTTTTTTCAACTTCAAAATGCTATATTATAAAATATAGAAAAAAT TCAGATTAGAAAACAGTAAATCTTTTGTCTATGGGACTAATATATCCCAATGCCAAAATT CTATCCTACACAGTTATAAATGACATCCTCTAT
	3' upstream sequence						TCAAACTGGTTATTTTTTAGCCACTAAAATGTATAGAATGGAACGGCAACCTATACAGGT TCTTCACCTACTTTCCTACAAAATTAAGCACCAGAAAGGCATGAGTTAGAAGCTATTTGT TCTCCCTGTTCCTGGAAGGCCTAGGTCTTTAGTATGAACTAGTCTAAGCCACACACACGC ACGAACATGCACACAGATGACACAGCCACCCACAGACACACACACATACACACACACACA CACACACACACACACACACACACCGCTTTGTAGAAACTTGGGTCTTTTGGTTTGGGTTTC TGGGTTTGTTTGTTTGTTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTCATTTTTAGTC CCTTATGCTCTCTCAAAGTTCTGGATTGAGAGTCATCTTCAGGATGCCTCAGAACTCCAG TGGATGATCAGAGCACAGTAGTGTTAGTCTTGCCTTTCAGAAAACGGGGGCCTTTCTCAC CTCATGATTGATGAATTCCAAGCCATTGGGGGAAAACAAAAAGACTTTAAAATAATGAAT CTCTTTTTCAACCACTGTTATATTCAATTAATTTAACTACATTGAACCAAATTACCTTTG GTTCTGAGAAGACAGCTGTAGACTGCTTATTATGCTGCTACAGGGACTCAGTTCTTTTTG GTGTAAATGTCACTCCTGCTAGCTCTTTGTATAAAGAATTAATTCCAAGAGTCATATTTC CTTCTAATGGAAAGATTACTTTACTGATTGCTAGGAAAACAGGGTAATGGAAGGCACTCA ATTAAACCAAGCCGTTTCCAAATGCGATATATGTTTTATGATTGGCTTGTGATAGGCAAT GCTTACTGTGTCTACTTGATGTTCCCCTTTGAGCTTTGAACTCATGTCAAACTTTGTTTT CATTGTTCTGTTGGCCCAGTGTTTCCCATTGTCAGCCTGA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Rorb (ENSMUSG00000036192)
Transcript ID	ENSMUST00000112828

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 386 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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