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Target CDS Information

Gene Symbol (Gene ID) Gls (ENSMUSG00000026103)
Cross Reference
EMBL AC123752
GO GO:0001967, GO:0002087, GO:0004359, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Gls-004
OTTP OTTMUSP00000023785
OTTT OTTMUST00000050761
RefSeq_peptide_predicted XP_006495765.1, XP_006495766.1
UCSC uc007aye.2
UniParc UPI0000F22060
Uniprot/SPTREMBL D3Z7P4
Vega_transcript Gls-004, OTTMUST00000050761
Vega_translation 179243, OTTMUSP00000023785
Definition protein_id:ENSMUSP00000110157
translation:
MDMLRLTLQTTSDGVMLDKDLFKKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDELYESA
KKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSIGDTKVPFCLQSCVKPLKYAIAVN
DLGTEYVHRYVGKEPSGLRFNKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYV
MQFLNKMAGNEYVGFSNATFQSERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLC
SIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGL
PAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAK
KLDPRREGGDQRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGH
VEVVKFLLEACKVNPFPKDRWNNTPMDEALHFGHHDVFKILQEYQVQYTPQGDSDDGKGN
QTVHKNLDGLL

Chromosome 1
Length
Position(start - end)
53,399
52,166,158 - 52,219,558
Orient to Chromosome minus
Link Location : (1:52166158-52219558)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gls (ENSMUSG00000026103)
Transcript ID ENSMUST00000114512
Reports
substitution
cSNPs5
Insertion46
Deletion57
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num1
synonymous substitutions 52166163 (p.Leu491Leu), 52166170 (p.Asp488Asp), 52191189 (p.Ser271Ser), 52212267 (p.Val127Val),
non-synonymous substitutions 52166198 (p.Gly479Glu),
B6 transcript
(ENSMUST00000114512)
MDMLRLTLQTTSDGVMLDKDLFKKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDELYESA
KKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSIGDTKVPFCLQSCVKPLKYAIAVN
DLGTEYVHRYVGKEPSGLRFNKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYV
MQFLNKMAGNEYVGFSNATFQSERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLC
SIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGL
PAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAK
KLDPRREGGDQRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGH
VEVVKFLLEACKVNPFPKDRWNNTPMDEALHFGHHDVFKILQEYQVQYTPQGDSDDGKGN
QTVHKNLDGLL*
MSMv4 transcript
MDMLRLTLQTTSDGVMLDKDLFKKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDELYESA
KKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSIGDTKVPFCLQSCVKPLKYAIAVN
DLGTEYVHRYVGKEPSGLRFNKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYV
MQFLNKMAGNEYVGFSNATFQSERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLC
SIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGL
PAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNLRHFAK
KLDPRREGGDQRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGH
VEVVKFLLEACKVNPFPKDRWNNTPMDEALHFGHHDVFKILQEYQVQYTPQGDSDDGKEN
QTVHKNLDGLL*
homology99.80 (492 / 492)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Gls (ENSMUSG00000026103)
Transcript ID ENSMUST00000114512
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GGGGCAGGCCGTCAGCGTCCTCCCGCCCCCGGTTGGTGAGCCTGGTATGT
CTCCAGCCCTCCCTTGAGCGTCAGTCTCAGTGCGGAGCTCGCGGCGGCCAGAGCAACTTC
GGCTGGCTGCAGGCTGGGCGGCGGCGGCGGCGAGGGCGGCGGCGTTGGCGGCGGGAGAGG
CTGAGCTGGGGCCACACCCCGTCCCGGACTTTTTCTCTTTCCAGTCCTCTCCCCGCCGTG
CGGGACACGGTTCCGGGAGCAGAGCGGCCGCCCACGCCCCAAGCATCCTCATCTGACGAG
CGGGCGCCGGCGGCATGATGCGGCTGCGAGGCTCGGCGATGCTACGGGAGCTGCTCTTAA
GGCCGCCCGCCGCCGTCGGAGCCGTCCTGCGGCGCGCTCAGCCCCTCGGCACGCTGTGCC
GGCGCCCCCGGGGCGGGAGCCGGCCGACCGCTGGCCTGGTGGCCGCTGCGCGACTCCACC
CGTGGTGGGGCGGGGGCGGCCGCGCGAAGGGCCCCGGCGCGGGCGGCCTGTCCAGTTCGC
CCTCGGAGATCCTACAGGAGCTGGGGAAGGGGGGTACGCCGCCACAGCAGCAGCAGCAGC
AGCAGCAGCAGCCAGGGGCGTCGCCACCCGCAGCCCCGGGCCCCAAGGACAGCCCGGGGG
AGACCGACGCGTTCGGCAACAGCGAGGGCAAGGAGATGGTGGCCGCGGGCGACAAGTGAG
TTGCGTGGGTGAGGCTGAGGGGAGGGGTCGGGCCCTGGGCGGTGGGCGGTGGCGGTGCGG
CGTAGCAACGGAGGTTCGCGGAAGAGAAAGAAAGCGATGCCAGGCGGCCTGCGACGGCTG
TGCCATGTGATTAGGCCCGGCCCCGCCCGCGCCCCTCGCCTGCTCCCACTTCCCCTCCGT
GGCCGGCGCGAGTCGCCCCGGGATGACGGGTGAGCGCCGGGAGGGTCTTGCCTGCTGAAG
CCCCTGCCGGGCAGAGGCTACTGTCCGGCCGTGCCGCGTGCTCAGCGCCC
1 EXON 1 52,232,096 52,232,296 - - 201
CGGCTCTGCGAGGGTGATGCCACGCGAACCTCCATCTCTCCCGAGTGACATTGAGGAGTC
GGGCGTAGAGCGGAGCTTCTACCTTCCCGATTCACCTTTTTGCCAGGCCGCAGTTCCCCC
ATTCTGTAAGCCTCCGCCACCATCCCACTGGATGCCAGATGTGGCCTTGGGTTCTTAATC
CTCCTGAGGTGGATCGTTTTG
INTRON 1 - 2 52,220,040 52,232,095 12,056
GCGTGCGTAGAGCCATCTGGGCCAC..........TGTACTTTTTTTTCTCCTCCTTTAG
2 EXON 2 52,219,943 52,220,039 - - 97
TAAAATAAAACAGGGTCTGTTACCTAGCTTGGAAGATTTGCTGTTCTATACAATTGCAGA
AGGACAAGAAAAGATACCTGTTCACAAGTTTATTACA
INTRON 2 - 3 52,219,610 52,219,942 333
GTAAGTTTTTATATTTTTTTCTCTC..........CAAACTCTTATTTTTTTAAAAACAG
3 EXON 3 52,219,488 52,219,609 - 2 122
GCACTCAAATCTACAGGATTGCGAACATCTGATCCCAGGTTGAAAGAGTGTATGGATATG
TTAAGATTAACTCTTCAGACAACGTCAGATGGTGTCATGCTAGACAAAGATCTTTTTAAA
AA
INTRON 3 - 4 52,215,695 52,219,487 3,793
GTAAAAATTTCTGCCAAACCTTTAA..........ACTGTTTTTCCATCACATTCCACAG
4 EXON 4 52,215,565 52,215,694 2 0 130
GTGTGTTCAAAGCAACATTGTTTTGTTGACACAAGCATTTAGAAGAAAGTTTGTCATTCC
TGACTTTATGTCTTTTACCTCACACATCGATGAGTTATATGAAAGTGCTAAAAAGCAGTC
TGGAGGGAAG
INTRON 4 - 5 52,214,558 52,215,564 1,007
GTAAGGCTTGGATACATATATTTTC..........TAATGACTTTTAATATTTTGGATAG
5 EXON 5 52,214,478 52,214,557 0 2 80
GTTGCTGATTATATTCCTCAGCTGGCCAAATTCAGTCCTGATTTGTGGGGTGTATCTGTC
TGTACTGTAGATGGGCAAAG
INTRON 5 - 6 52,212,367 52,214,477 2,111
GTAAGTTTATTTTATAGTCTATGAA..........TTGATTTTTAAATCTACTTTAATAG
6 EXON 6 52,212,203 52,212,366 2 1 164
GCATTCTATTGGAGATACCAAAGTTCCTTTTTGTCTTCAGTCCTGTGTAAAACCCCTGAA
ATATGCAATTGCTGTTAATGACCTGGGAACTGAGTATGTGCATCGCTATGTTGGGAAGGA
GCCAAGTGGATTAAGATTCAACAAACTCTTTTTGAATGAAGATG
INTRON 6 - 7 52,207,360 52,212,202 4,843
GTAAGGAGTACCTACAAATGGGCTG..........ATGCTGTCACGATTATGTTTTACAG
7 EXON 7 52,207,301 52,207,359 1 0 59
ATAAACCACATAATCCTATGGTAAATGCTGGAGCAATTGTTGTGACTTCTCTAATAAAG
INTRON 7 - 8 52,199,888 52,207,300 7,413
GTAAAATGTTGACATTTCTTTTTAA..........ATGCTTGCCTTTCATTTCTTTTCAG
8 EXON 8 52,199,855 52,199,887 0 0 33
CAAGGAGTAAATAATGCTGAGAAGTTTGACTAC
INTRON 8 - 9 52,199,770 52,199,854 85
GTAAGTATTAACACCACACTATGTT..........AATAAACTTCTGATTTGGTTTGTAG
9 EXON 9 52,199,711 52,199,769 0 2 59
GTGATGCAATTTTTGAATAAGATGGCTGGTAATGAATATGTTGGATTCAGTAATGCAAC
INTRON 9 - 10 52,196,810 52,199,710 2,901
GTAAGTCTAATTTGTGTTTTGGGTT..........AACAACCATCATTTTTTTCTTCTAG
10 EXON 10 52,196,743 52,196,809 2 0 67
GTTTCAGTCTGAACGAGAAAGTGGAGATCGAAATTTTGCAATAGGATATTACTTAAAAGA
AAAGAAG
INTRON 10 - 11 52,196,216 52,196,742 527
GTTTCAAAATTTTTTCTATTCAAAG..........TTTTTTGGATTTTGCTCTTTTCCAG
11 EXON 11 52,196,165 52,196,215 0 0 51
TGTTTTCCAGAAGGCACAGACATGGTTGGGATACTAGATTTTTACTTCCAG
INTRON 11 - 12 52,191,288 52,196,164 4,877
GTAATTTTTACTCTGAGTTTTATGA..........AAAACTCATTTTTTCTCTGTTTTAG
12 EXON 12 52,191,111 52,191,287 0 0 177
CTGTGCTCTATTGAAGTGACATGTGAATCAGCAAGTGTGATGGCTGCCACCTTGGCTAAT
GGTGGTTTCTGCCCAATTACTGGTGAAAGAGTCCTCAGCCCTGAGGCAGTTCGGAATACA
CTGAGCTTGATGCATTCTTGTGGCATGTATGACTTCTCAGGGCAGTTTGCGTTCCAT
INTRON 12 - 13 52,189,555 52,191,110 1,556
GTAAGTATTTGCTGATTTTCTCTCG..........GCCCTTTTATTTAAATTATTTTCAG
13 EXON 13 52,189,423 52,189,554 0 0 132
GTTGGTCTTCCTGCAAAATCTGGAGTTGCTGGGGGTATTCTTTTAGTTGTCCCCAACGTC
ATGGGCATGATGTGTTGGTCTCCTCCTCTTGACAAGATGGGCAACAGTGTTAAGGGAATT
CACTTTTGTCAC
INTRON 13 - 14 52,188,772 52,189,422 651
GTAAGCAAATTTTATTAGTGAGGAA..........ATGTATTCTGTGTAACTCTTTACAG
14 EXON 14 52,188,679 52,188,771 0 0 93
GATCTTGTTTCTCTGTGTAACTTCCATAACTATGATAATTTGAGACACTTTGCAAAAAAA
CTTGATCCTCGGAGAGAAGGAGGTGATCAAAGG
INTRON 14 - 15 52,168,959 52,188,678 19,720
GTAAGCCAGTCCTTCCTTAGATCCT..........ATATCTGTCTTGTCTTTGTCCATAG
15 EXON 15 52,168,897 52,168,958 0 2 62
GTGAAGTCGGTGATAAACCTTCTGTTTGCCGCATACACTGGAGATGTGTCTGCCCTCCGA
AG
INTRON 15 - 16 52,168,562 52,168,896 335
GTATGCGGGCAGGGTGGAGACACTG..........GAGCGAGCGATTTATGCTTTTCCAG
16 EXON 16 52,168,485 52,168,561 2 1 77
GTTTGCTCTGTCAGCCATGGACATGGAGCAGCGGGATTATGACTCCAGAACAGCCCTCCA
TGTCGCAGCAGCAGAGG
INTRON 16 - 17 52,168,400 52,168,484 85
GTAACGCATGAGCCACTTAGAGCTT..........TTTGTTTGTGTTTGGGGGAATATAG
17 EXON 17 52,168,336 52,168,399 1 2 64
GTCATGTTGAAGTTGTCAAGTTTTTGCTGGAAGCTTGCAAAGTAAACCCTTTCCCCAAGG
ACAG
INTRON 17 - 18 52,166,315 52,168,335 2,021
GTGAGTGTCTACATTACCACTTCCC..........AACGACCCTGTCTGCTGTGCTGCAG
18 EXON 18 52,165,941 52,166,314 2 - 374
GTGGAATAATACCCCCATGGATGAAGCACTACACTTTGGACACCATGATGTTTTTAAAAT
CCTTCAGGAATACCAAGTTCAGTACACACCTCAAGGGGATTCTGATGATGGAAAGGAAAA
CCAGACTGTCCACAAGAATCTCGATGGGTTGTTATAATGGTCTGCATCCCAAGACTTCCA
TTACTTACCTAGTCATTGTGGAACATGATTATGGAGAGCATTGTATATTTCTATCTGGTA
GTAATGTGTATTTACAACATCTGTCACTGCAGTGTTACCGGAGCTTCCTTCATTGTGCGC
ACACGACAAATCTGAGTTCTTTGGGAAAAAAATAGAAATGAAGCAGCCTCCCTTCATAAT
GTGAGCAATAGTTA
3' upstream sequence
CCTCGTGCATTGTACAATGTGGTGTAAAAGAGTAGTTACCAATGCCAGCTGAACTGTGTG
GTCTTCATGGTTTGTGTTCTGTACATTTTCAAGCCCTGGTGATGATATGCTCATATGCAC
TTAGGAGTGAGCTTTGTTGTACAGTCTGTCCACGGGGTCGATGCTGTTATTAGGTGAAAA
TAGTGTGATCTTTAAGACTTTAAATACAGATTTAGTTTTGAGTGTTTGAGAGACCACTAC
ACTTGTATGGTTGAGTGTTTAAAATGTCTATCACCCTCACTTCAGAGTGTGACTCTTTAA
ATATTAAAATAGATACTAACTGTTCATAGAACAAGCCGATTCTGATTAGATTTTATCAGG
GAATCTGTTAAGATATGTTTGGTGACCAAAACGTATGTGTGGATATAGTTCTAGCACTTT
TAAACTTTTCCTTTCCATACAACGCTTGGGCCAGCCTCTCTGTGCTGCGTGGCTGTCGGT
CCCCCTCAGCTGGGAAAGAGAGCACAGGCTCACTGTGCAGTTTTCATGTTTCCTCAGCAA
GCCATCAAGCCTCACATGTCTACCATCAGAGATAGAGCTTGGCCATTTATCTAAGGAAGA
TGAGCCAAAATTATGACATCTAAAGTAATCGTCAGTCTTAAGAGTAAAGACAGCGAAACT
GCACACTTATAAGTTCTTTTCAGCTTCTACAATAAAGAAAAGTTCAGAAATGCTTTCAGT
TACCAAAGTTATAACGATATATTTAGGAAAAGCTACAAATAACACTTACTTTGAATCCTG
CTGTCAAATGTCTGCATCAAGATAGCACCCCTTTGTGGGAGGCCCTGAGTATCTTCTCTT
CCTCTACTGCCTAACTGTTGGTGGGCTGTATCATTCAATAAGATCACTTCATTTTCAATT
TAGACCCACCGTTTCTTTTTTGTTGTTTTGTTTGGTTTGGTTTGGTTTGGTTGGGTTGGG
TTGTTGTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Gls (ENSMUSG00000026103)
Transcript ID ENSMUST00000114512
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 492 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information