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Target CDS Information

Gene Symbol (Gene ID) Nck2 (ENSMUSG00000066877)
Cross Reference
GO GO:0001771, GO:0005783, GO:0007015, ...show all
goslim_goa GO:0002376, GO:0003674, GO:0005575, ...show all
MGI_trans_name Nck2-005
OTTP OTTMUSP00000066780
OTTT OTTMUST00000120793
UniParc UPI0004621084
Uniprot/SPTREMBL A0A0A0MQF0
Vega_transcript Nck2-005, OTTMUST00000120793
Vega_translation 179155, OTTMUSP00000066780
Definition codon_start:3
protein_id:ENSMUSP00000110392
translation:
XTEEVIVIAKWDYTAQQDQELDIRKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKN
SLKKGSLVKNLKDTLAQ

Chromosome 1
Length
Position(start - end)
35,585
43,533,569 - 43,569,155
Orient to Chromosome plus
Link Location : (1:43533569-43569155)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Nck2 (ENSMUSG00000066877)
Transcript ID ENSMUST00000114744
Reports
substitution
cSNPs1
Insertion47
Deletion46
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 43533699 (p.Ala43Ala),
non-synonymous substitutions
B6 transcript
(ENSMUST00000114744)
TEEVIVIAKWDYTAQQDQELDIRKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKNS
LKKGSLVKNLKDTLAQ*
MSMv4 transcript
TEEVIVIAKWDYTAQQDQELDIRKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKNS
LKKGSLVKNLKDTLAQ*
homology100.00 (77 / 77)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Nck2 (ENSMUSG00000066877)
Transcript ID ENSMUST00000114744
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGTCTAGGAACCTGCTCAGGTGTCAGGGCTGGATGGTTCTTGCTAACACT
GGGTGATCCAGAGATGGACACAAAAGCAATAGAGAGCAGGGTCCCAGGGACTTCAGTAAA
GTTTGCTCAAAGGAGACCCCATGTCCAAATCCACCTCGCTGTCTGCCTTCAATTCTAGGA
AGCATCTGCGTTTCCTCGTGCTCTTTGCCTAGCACTTAAGTAATCCACTGACAGTTGGCT
TATCAGGTCACCTACTGAAGGATATCTTTGTTTATTTCCCAGTTTGGGGAATTATGAATA
AAGTGGTAAATATCTAAGTGTTGCTTTGTTTTCGAGAGTAATCTTACATTTATAGGAAAG
TTGTATAGTTATTTGTGCAGAAAATTAGCCCTTAGCTAATTTCTCCAGTGTTGAAATATG
ATATTGAATTGTCAAAACTAATTAACATGGGTACATTGCTGTTGTTTAGGCTTTGTTTAC
ATCTCAACAGTGTTTTCACAAATTTTCTTTGTATATTTTACTCTCCGTCTCAGGATACCA
CATTGGCATTAGTAGTACATTAATTGAATCTGAGTTTAAAGCAGTAGTTTGAGTGTGTTA
TATTTACTAAATGTCTTCAAAATTTTCAGCATATGCTGAGAATAGGAGTGTAAGCGTGTC
AGCTATAAGGGGCCAGTGTCACTTGTCAAATGAGCACTTTAAATATGAGATTATTATTTT
GAGTGTTTTTCCCCCCAAGTTTGCATCTAGCTTCAGTAAAACGTGCAGTGTGTTTAGTGC
ACTGAGAGGGGCTGCAGGCTTTGATTACAAGATGTTGTTTCTCAGCAGCATTAGAGCTGA
TGGGTAGGTCATTCTAAGGGCAAGTGCTTCAAGGGGCTGGAAGGAGACTGGTGGCAGTTG
TGGTCCTAGGAGCTGTCGTTGACAATTTTTCAGATGTGTCAGAGGAGAGGTGTTCAGGTA
GCTAATGAGCATCTTTAAATGTTTTGCTGGCAGAAGGACTCCATGAAAGA
1 EXON 1 43,533,569 43,533,793 - 1 225
TGACAGAAGAAGTCATTGTCATAGCCAAGTGGGACTACACTGCCCAGCAGGACCAGGAGC
TCGACATCAGGAAGAACGAGCGGTTGTGGCTGCTAGATGACTCCAAGACGTGGTGGCGGG
TGAGGAATGCGGCCAACAGGACAGGCTACGTGCCTTCCAACTATGTGGAGCGTAAGAACA
GCCTGAAGAAGGGCTCCCTGGTGAAGAACCTCAAGGACACACTAG
INTRON 1 - 2 43,533,794 43,569,147 35,354
GTGAGTGTCCATACCCACAGGAACA..........TAACTCCCTTCTGCTTCCTCCTCAG
2 EXON 2 43,569,148 43,569,342 1 - 195
CCCAGTGACTTCTCCGTGTCTCTCAAAGCGTCAGGGAGAAACAAGCACTTCAAGGTGCAG
CTGGTGGACAGCGTCTACTGCATTGGGCAGCGGCGGTTCCACAGCATGGACGAGCTTGTG
GAGCACTACAAGAAGGCCCCCATCTTCACCAGCGAGCACGGGGAGAAGCTCTACCTTGTC
CGAGCCCTACAGTGA
3' upstream sequence
AAGCAGCCATTGGCCCCCTCATGCCCTGCCCACTGTGGGCCTCGCTGCCACCTCTGCCTC
CCAGAGCCCAGCACTTCTGGCCACCTCCACCCATGTGGCCTGGATCACCTCTGTGGCCCA
GTCTGTCCTTCTTTTCAGCCCTGTTGGTCAACCACGGCTACCTAGGCCCTCACAACCATG
CCCCAGGCCACCACCTTCTGGTGATGAGGGTCAGAGGGAGCAAAGCTACTCACTTCTTTC
CTTTCCAGCTGGAAACAGCCTGTTTGAATCCTTACACACACATACACAGAGAGGGAAGGG
GGGTGCAGAGAGAGAGACTGACTAAAAGACTGGAGCTGCTTCAGAGGGTCGCGAGGCTGT
ATGTAGTGAATATGTGACCTTGGCACACACTCCGAGAGCTGTGTCCCTGGGTGTTTGGTG
CCTCTCGTCAGCATGCTGGTCCAGACCGGCAGCCTGTGTCCTGGGCCTGCTTTGCTTTGC
TTTCTTTCTTTCTTTTTCTTTTTTTTTTTTTTCAATTTTATTTTTTAATTTTATTTTATT
TTGGCTCCAGGCACTGCAGGAGTCCAAAACTGTGCGGATAGCAATACTGGAAACCCTGGG
GAGATGGTGGTGAGAAAACTGCCCAGTGCCTTTGAGGCTGTACTTGCAATAAAAGAGGGT
TTTGGTAAGAGTTGGTCTGCAAAAGAGGAAGGTGGCAACACAGAAAGAAAGGTACTCTGG
TGATGTCCCCCAGGTGTGCCATCCACATCGTGCTTTTGCCCTTGGGCTTGTTTGAATTTC
ACAATTATGTATTTAATTCTCAAAGTAATATGTATCTGTAGCTGGTTGTTGACACTAATA
ACATGATTAAGGAAAACAGCTGATCTCTTGGGAAGGGGAGCTACCAATACTTTATACATA
CACTATATATATATATATAATATGTGTATATTATATATATATTATTTGCTTTACAGGGAA
ATTTTTCAGGGTTTACAAAAGAATATGTGATTAGTAGTAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Nck2 (ENSMUSG00000066877)
Transcript ID ENSMUST00000114744
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 77 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information