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Target CDS Information

Gene Symbol (Gene ID) Inpp4a (ENSMUSG00000026113)
Cross Reference
CCDS CCDS35540.1
EMBL AC084390, AC133096
GO GO:0006798, GO:0016316, GO:0036092
goslim_goa GO:0003674, GO:0006629, GO:0008150, ...show all
MGI_trans_name Inpp4a-008
OTTP OTTMUSP00000044560
OTTT OTTMUST00000083032
RefSeq_mRNA NM_172971.3
RefSeq_peptide NP_766559
UCSC uc007arn.2
UniParc UPI0000F23D77
Uniprot/SPTREMBL E9QAD0
Vega_transcript Inpp4a-008, OTTMUST00000083032
Vega_translation 179023, OTTMUSP00000044560
Definition protein_id:ENSMUSP00000110583
translation:
MCVCFACRVCELEELGELSPCWESLRRQIVTQYQTIILTYQENLTDLHQYKGPSFKASSL
KADKKLEFVPTNLHIQRMRVQDDGGSDQNYDVVTIGAPAAHCQGFKSGGLRKKLHKFEEA
KKHSFEECCTSSSGQSIIYIPQDITRAKEIIAQINTLKTQVSYYAERLSRAAKDRSATGL
ERTLAILADKTRQLVTVCDCKLLANSIHGLNAARPDYIASKASPTSTEEEQVMLRNDQDT
LMARWAGRSSRSSLQVDWHEEEWEKVWLNVDKSLECIIQRVDKLLQKERLHGEGCEDAFP
CSSTCSSKKDCSPPPEESSPGEWSEALYPLLTTLTDCVAMMSDKAKAAMVFLLMQDSAPT
IASYLSLQYRRDVVFCQTLTALICGFIIKLRNCLHDGGFLRQLYTIGLLAQFESLLSTYG
EELAMLEDMSLGIMDLRNVTFKVTQATSNASNDMLPVITGNRDGFNVRIPLPGPLFDSLP
REIQSGMLLRVQPVLFNVGINEQQTLAERFGDTSLQEVINVESLVRLNSYFEQFKEVLPE
DCLPRSRSQTCLPELLRFLGQNVHARKNKNVDILWQAAEVCRRLNGVRFTSCKSAKDRTA
MSVTLEQCLILQHEHGMAPQVFTQALECMRSIGTREVVTQKNLSGLVPIRDLRLDPSLLC
SIPLLALSPNLLIVWLFLSIAYLVTKLRCK

Chromosome 1
Length
Position(start - end)
34,293
37,369,335 - 37,403,629
Orient to Chromosome plus
Link Location : (1:37369335-37403629)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Inpp4a (ENSMUSG00000026113)
Transcript ID ENSMUST00000114933
Reports
substitution
cSNPs5
Insertion19
Deletion20
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num1
synonymous substitutions 37380023 (p.Asp297Asp), 37388870 (p.Ile406Ile), 37388909 (p.Tyr419Tyr), 37390104 (p.Arg481Arg),
non-synonymous substitutions 37389746 (p.Asn452Ser),
B6 transcript
(ENSMUST00000114933)
MCVCFACRVCELEELGELSPCWESLRRQIVTQYQTIILTYQENLTDLHQYKGPSFKASSL
KADKKLEFVPTNLHIQRMRVQDDGGSDQNYDVVTIGAPAAHCQGFKSGGLRKKLHKFEEA
KKHSFEECCTSSSGQSIIYIPQDITRAKEIIAQINTLKTQVSYYAERLSRAAKDRSATGL
ERTLAILADKTRQLVTVCDCKLLANSIHGLNAARPDYIASKASPTSTEEEQVMLRNDQDT
LMARWAGRSSRSSLQVDWHEEEWEKVWLNVDKSLECIIQRVDKLLQKERLHGEGCEDAFP
CSSTCSSKKDCSPPPEESSPGEWSEALYPLLTTLTDCVAMMSDKAKAAMVFLLMQDSAPT
IASYLSLQYRRDVVFCQTLTALICGFIIKLRNCLHDGGFLRQLYTIGLLAQFESLLSTYG
EELAMLEDMSLGIMDLRNVTFKVTQATSNASNDMLPVITGNRDGFNVRIPLPGPLFDSLP
REIQSGMLLRVQPVLFNVGINEQQTLAERFGDTSLQEVINVESLVRLNSYFEQFKEVLPE
DCLPRSRSQTCLPELLRFLGQNVHARKNKNVDILWQAAEVCRRLNGVRFTSCKSAKDRTA
MSVTLEQCLILQHEHGMAPQVFTQALECMRSIGTREVVTQKNLSGLVPIRDLRLDPSLLC
SIPLLALSPNLLIVWLFLSIAYLVTKLRCK*
MSMv4 transcript
MCVCFACRVCELEELGELSPCWESLRRQIVTQYQTIILTYQENLTDLHQYKGPSFKASSL
KADKKLEFVPTNLHIQRMRVQDDGGSDQNYDVVTIGAPAAHCQGFKSGGLRKKLHKFEEA
KKHSFEECCTSSSGQSIIYIPQDITRAKEIIAQINTLKTQVSYYAERLSRAAKDRSATGL
ERTLAILADKTRQLVTVCDCKLLANSIHGLNAARPDYIASKASPTSTEEEQVMLRNDQDT
LMARWAGRSSRSSLQVDWHEEEWEKVWLNVDKSLECIIQRVDKLLQKERLHGEGCEDAFP
CSSTCSSKKDCSPPPEESSPGEWSEALYPLLTTLTDCVAMMSDKAKAAMVFLLMQDSAPT
IASYLSLQYRRDVVFCQTLTALICGFIIKLRNCLHDGGFLRQLYTIGLLAQFESLLSTYG
EELAMLEDMSLGIMDLRNVTFKVTQATSNASSDMLPVITGNRDGFNVRIPLPGPLFDSLP
REIQSGMLLRVQPVLFNVGINEQQTLAERFGDTSLQEVINVESLVRLNSYFEQFKEVLPE
DCLPRSRSQTCLPELLRFLGQNVHARKNKNVDILWQAAEVCRRLNGVRFTSCKSAKDRTA
MSVTLEQCLILQHEHGMAPQVFTQALECMRSIGTREVVTQKNLSGLVPIRDLRLDPSLLC
SIPLLALSPNLLIVWLFLSIAYLVTKLRCK*
homology99.86 (691 / 691)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Inpp4a (ENSMUSG00000026113)
Transcript ID ENSMUST00000114933
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CGGTGCAGTGGGTCTGCAGCCGTTTCACCCACAGCCTATCTTCTTGCATT
CCCACCTCAGTGTTTGGTGGTGCCATCTGCCGCATGTACCGCTTCCCAACTACTGATGGT
AACCACCTACGGATCCTGGAGCAGATGGCAGAGAGCGTCCTCTCCCTGCACGTGCCTCGG
CAGTTTGTGAAGCTACTGCTGGAGGAAGATGCAGCCAGGTGAGGCCAAGGGGATGGACAC
TCACCACTCATGAGCACGTGCCTACGACAGGCTGAGTGCAGACCCAGGCTCTTCCCTTGC
TGGCCCCATGGCCCCAGCCATCTGAAGCCTGTTTGCTCCTCTGACTTACAGTTTGGTGGG
CAAGAATTTACGGGGCTGAGCTTGAAGCCCCAGAGGCTTGGCTAACATCAGCCTATCTTC
CCTTCTTTCTCTCTCTTTTCCTTCTAATCCCTCCTGTTTGGAACCATAGAGATGAGAGCT
CAGAGGATGGCCCTACAGAGTCCTCCCCTCCCACAGAGCCAATCTTTTATCCCGAGGTAT
ATTTCTCAGTTCCAAAGAAGGCTGAGACTATTTCCTCTCTGTCTCAGACTGTGACCTCCA
CAGCTTTTTCTAAATCAGCATTAGTGATTAACATCATGTGTGTTACTGCTTCAAAGAGCT
TCTTCATTGGGCAGGTGCTTTAGAGCCAGCTAAGGTGTTGGCAGCAACTGTACAGGCAGG
GCTGACACCCAGTGTAGGCAGCAAGCATGCTCAGATGGGAGATGGGGCTCTCCCAGAAGT
GTGAGACTGTCGCTGTGTTCTTGACATGGAAAGGAGGTTGTTGGGAAGAGGGTGGGGAGG
TGAGTGGTTTCTCACATCTCCCGTCCTTCTCTTCTGGAGTAATGCATCGTTCCGCAGAGA
ACCAGACCAGTGCTGGAATGAGTGTTCAAGGTCACCAGGCAGAGCTCCTCCTCAGCTGCT
TCTCTCCTCCCCACATTCGCTGCTGGCCTTGAGCATTTACCTCGGCTCCT
1 EXON 1 37,369,217 37,369,488 - 1 272
GTAGTTTCTCTGCGTGCTTCCTGTGTGCACAGTGATCTCTCCCATCATCCTGTGAGGATG
GCAGTGGCACTGCTGGCCTGGTCCTAACTGCAGGGAGGTGAGCCAGCCCTGTGGCCTGAT
GTGTGTGTGTTTTGCTTGCAGGGTATGTGAGTTGGAAGAGTTGGGGGAGCTGTCCCCTTG
CTGGGAGAGCCTCCGGCGCCAGATTGTCACCCAGTATCAGACTATCATCCTCACCTACCA
GGAGAATCTGACTGACCTCCATCAGTACAAAG
INTRON 1 - 2 37,369,489 37,371,701 2,213
GTGGGTGTGGCCCTGTCTTCCCAGG..........GCTGCTCTCTTGTTTTATTTCTTAG
2 EXON 2 37,371,702 37,371,806 1 1 105
GTCCTTCCTTTAAAGCAAGCAGTTTGAAAGCAGATAAAAAGTTAGAATTTGTTCCCACAA
ACCTGCACATACAACGGATGCGAGTTCAAGATGATGGAGGCTCAG
INTRON 2 - 3 37,371,807 37,372,310 504
GTACTTGCTTTTCTCACCCCATTGC..........CGGAGGAAAGCTTTCTGTTGCTCAG
3 EXON 3 37,372,311 37,372,419 1 2 109
ATCAGAACTACGATGTCGTCACTATTGGAGCCCCAGCAGCACACTGCCAAGGTTTTAAGT
CAGGAGGTCTTCGAAAAAAGCTGCACAAGTTTGAAGAGGCCAAGAAACA
INTRON 3 - 4 37,372,420 37,374,271 1,852
GTAAGTGAAGGAAGGTATCTGTGGT..........TGGTTTTTTTTTTTTTTTTCTTTAG
4 EXON 4 37,374,272 37,374,289 2 2 18
CAGTTTTGAGGAGTGTTG
INTRON 4 - 5 37,374,290 37,377,577 3,288
GTGAGTTTTCTGTCTGTGGAGAGAG..........CCTTAGGACCTGTTGTTCCTTTTAG
5 EXON 5 37,377,578 37,377,761 2 0 184
TACATCTTCTAGTGGCCAGTCCATCATCTACATACCACAGGACATCACCCGAGCCAAGGA
GATCATTGCCCAGATCAACACCCTAAAAACCCAGGTCAGCTACTACGCGGAACGGCTCTC
AAGGGCTGCGAAGGACAGGTCAGCTACTGGCCTTGAGAGGACTCTCGCCATCTTGGCAGA
CAAG
INTRON 5 - 6 37,377,762 37,378,840 1,079
GTAGGAGGGGCTGCCCAGTTGCGTG..........AGCCCTGGTTTGTGTGAACCTGCAG
6 EXON 6 37,378,841 37,379,059 0 0 219
ACTCGGCAGTTGGTGACTGTCTGTGACTGTAAGCTGCTGGCCAACTCCATCCATGGGCTG
AATGCAGCTCGGCCCGACTACATCGCTTCCAAGGCCTCCCCTACCTCGACTGAGGAGGAG
CAGGTGATGCTTCGGAATGACCAGGACACCCTGATGGCCAGGTGGGCGGGGAGAAGCAGC
CGGTCTTCCCTGCAGGTGGACTGGCATGAGGAGGAGTGG
INTRON 6 - 7 37,379,060 37,379,921 862
GTGAGTCTGCTGCCCCTGCCTGGGG..........CCCAGACAGTCTTGTTGGTTTGAAG
7 EXON 7 37,379,922 37,380,060 0 1 139
GAGAAAGTGTGGCTGAATGTGGACAAGAGCCTGGAGTGCATCATTCAGCGGGTGGACAAG
CTGCTGCAGAAGGAGCGTCTGCATGGGGAGGGCTGCGAGGACGCTTTCCCCTGTTCGAGC
ACCTGCTCCAGCAAGAAAG
INTRON 7 - 8 37,380,061 37,383,338 3,278
GTAACCGGGACAGCCAAGCCTACTG..........CCTGTTGCCCTCCATTTCTGTGCAG
8 EXON 8 37,383,339 37,383,371 1 1 33
ATTGCAGCCCCCCTCCTGAAGAGTCCAGTCCAG
INTRON 8 - 9 37,383,372 37,387,697 4,326
GTACGTGCTTTGCGTTCAAGGCTCC..........TAACAAGCCTCTCGCTCATGTGCAG
9 EXON 9 37,387,698 37,387,870 1 0 173
GTGAGTGGAGCGAGGCCCTTTACCCTCTGCTGACCACCCTCACAGACTGTGTGGCCATGA
TGAGCGACAAGGCCAAGGCAGCCATGGTCTTCCTGCTCATGCAGGACAGTGCCCCCACCA
TTGCCTCGTACCTCAGCCTGCAGTATCGCCGTGACGTCGTCTTCTGCCAAACC
INTRON 9 - 10 37,387,871 37,388,786 916
GTAAGGCCCCAGAGGACACAGAGCG..........CACCGTTGCCCTGTTTCATCCACAG
10 EXON 10 37,388,787 37,388,910 0 1 124
CTGACAGCCCTCATCTGTGGCTTTATCATCAAGCTGAGGAACTGCCTGCACGACGGTGGC
TTCCTGCGGCAGCTCTACACCATTGGCCTTCTGGCCCAGTTTGAGAGCCTGCTGAGCACC
TATG
INTRON 10 - 11 37,388,911 37,389,649 739
GTGAGACCCCAGTTTGGAGGTGACC..........ATCACCCCTCTCTGATTCATTTCAG
11 EXON 11 37,389,650 37,389,776 1 2 127
GAGAGGAGTTGGCCATGTTGGAGGACATGAGCCTTGGAATCATGGACCTGAGGAATGTGA
CCTTTAAAGTCACTCAGGCCACTTCGAATGCATCAAGTGACATGCTGCCGGTCATCACAG
GAAACCG
INTRON 11 - 12 37,389,777 37,390,048 272
GTAAGATCATCTAACACTCTGCCAG..........ACTTTGCATTTCCTCTCTTCACTAG
12 EXON 12 37,390,049 37,390,189 2 2 141
GGATGGCTTTAACGTGCGGATCCCTCTGCCAGGCCCACTGTTTGACTCCCTCCCCCGAGA
GATCCAGAGTGGCATGCTGCTGCGGGTGCAGCCTGTCCTCTTCAACGTGGGCATCAATGA
GCAACAGACACTGGCTGAGAG
INTRON 12 - 13 37,390,190 37,392,942 2,753
GTGTGTGCCGGTGCCTGCACAGCTG..........CACTGATGCCCTGATTCTCCCCAAG
13 EXON 13 37,392,943 37,393,040 2 1 98
GTTTGGAGATACGTCCTTACAAGAAGTTATCAATGTGGAGAGCTTGGTGCGGTTAAATTC
CTACTTTGAGCAGTTTAAGGAGGTTTTGCCGGAGGACT
INTRON 13 - 14 37,393,041 37,396,069 3,029
GTGAGTATCCCTTCCCTCGGAATGT..........GCCCCTCTTCCCTCTTCTCATCCAG
14 EXON 14 37,396,070 37,396,182 1 0 113
GTCTACCTCGATCTCGGAGTCAGACCTGCCTTCCAGAGCTGCTGCGGTTCCTGGGACAGA
ATGTCCATGCACGCAAGAATAAGAATGTGGACATCCTCTGGCAAGCTGCTGAG
INTRON 14 - 15 37,396,183 37,398,765 2,583
GTACTCGTCATAGTGCAGAAGAGTT..........CCTAAGAGCCTTTTTCCTGCTGCAG
15 EXON 15 37,398,766 37,398,920 0 2 155
GTCTGTCGCCGCCTTAACGGGGTCCGATTCACCAGCTGCAAGAGTGCCAAGGACCGCACA
GCCATGTCGGTGACCCTGGAGCAGTGTCTGATCCTGCAGCACGAGCACGGCATGGCCCCG
CAGGTCTTCACACAAGCCCTGGAGTGCATGCGCAG
INTRON 15 - 16 37,398,921 37,403,448 4,528
GTGAGTGAGGCTGCTGCCAGGCTGC..........TCTCCCAACTTTTTCCTTTTCACAG
16 EXON 16 37,403,449 37,404,442 2 - 994
CATTGGAACACGGGAGGTAGTCACCCAGAAGAACTTGAGCGGCCTGGTGCCCATCCGAGA
CTTAAGGCTAGACCCCAGCCTTCTCTGTTCCATTCCTTTATTAGCTCTAAGCCCCAATCT
ACTGATTGTGTGGCTCTTTCTGAGCATAGCGTACCTGGTGACCAAATTGCGTTGCAAATA
GATATCATTATGAAAAATTAGTCACGAGGCAGACAAAAGTGCCCGAATATATCCAGCCAC
CGTGTACCAAACTGGACAGAAGGAAGGTGTCAAAGCAAGGTCTGCCGAGAAATATCTCAT
GCCTTACAGTTTGATGTTCTGTTCTTCCGAATTGTATATACCTGCCAAATTCTTCCATCA
AGAGGACTCGTTCATTTCAATTGTGTAGCGTCTTCAGTGCTTGTAACATGTTCTTCTGGT
GCCTGTGACTGCAATATTTAGCTGGCCTGGGATTCCTTGTACCAAATATCTTCTGATGTA
TAACTATTTATTACCTGTACATCTTGTGTGCCCTGTTTCAAGAGAAAGGGATGCTGTCTG
AAAAGAATTTGTATATTTGATACTATTCCTTAAGTGTATCGCTAACCTTCCTTGCCTTTT
AACGAAAAAGAGATGCTTATCAACCAGTTGATCTAGATGCCCCCATGTAATAGGACTGTA
CTTCCTACTTACCTTTCACAGCGTAGTCCTGGGAGTGCAATAGCAAACAGTCTGCAGAGT
AACACTTGTTCACCTTCATTTCTTTCCCCTGGGTGACGATGCAGCTGTGGATGCAGGCAT
ACATGCCACCGAGTCCAACACATTACCTGTTGCATGTGACTTCAGGGTTGTTCCTAATCC
AAGCACTAGTGAGGGGTATAAACTTTTTCTTGAAATAACATTTTTTAATTTAAAAACTGT
ATGTTTAATTCCAGATAAAGTCTAGATATCTTTTTTTTCTTTTACTATTAAGTAAGGTTA
ATAGTGAACAAAAATAAAAATGTCCTAAAACAAC
3' upstream sequence
ACTGTGGGTTAAGTGTTGGCAATTGGGAGACTTGGGGCTGTGAGGAAGAGGAGTCACTCT
GGTTTTGCCGCTGCTGCCCTTCTTTTGAACATGGTACTGCTCCTAAAACAGGGTGACTAG
TAACCCTGACATTTATGTGTGTCAGAGAGGACTTGTTCTCTATAAAAGTAGCCCACTAGC
CTTGTGTGAGACAGTGAATGGCTTCTCCATTGTCTGGTTCATATTAGGCCATGTTTCCGA
TTTTGACCTCCAGTTGGATGAAGGGAGTTTCTTTTCTTGAGTCTTGTGAAAAACCTGGAG
TGCCTTAGAGAAGCCAGAGTTTCTAGTACTTGATATTCTCATGTTCCCAAACCCACCCAC
CATAAATCTAGCCCTTGTATTCTCTCCCCAAGATCCCCTGATCATACTTGGAGGATTTCC
CCTGGGCTGGATTCCTCTAAAAGAGTAAGTAAAGTCTAAGAGCCGCAGAAGCAGTTAGTA
GTGAAAACCAGATGCCAGACTGAACCTATAAATTGGGCTGGATAAGCCTGTCCTTTGCAG
ATCCGAGCACTGCAGGATCCCAGGGCAGGCCTCACCTCTGTGTCTCCACATAAGCAGGTC
TCCATGTCACTCCTAGTATAAGCATAGTGACAGCTCTGTTGCATCTTTCAGTTTAGTGTC
TCACCCATTGCCAGCTGACATTAGTCACCAGACAGACAGTCAATGATTCTTTGATAGATG
CCCTTCCACCTCAAAGCATGTGCTTCAAGCCTCTAAGACCATTTTGTTTGCTTCATTTGC
ATAGGGGAGAAAGAGTCCATAGCTTCCTTCCATCTGCATTCCACGGCCTCCTGGTTGCTA
CCCTCCTGATACTATGGAGATGACTCAGGAAGGCATCATTTCCAGGGTTGTGCTGTGGCC
AAGCAGAGAGAGACCATAGACAGTGAGGGCGGCCTGCAGAGGAACTACAGAGACAGCACC
CTCTGTCCCCTAGAGACCAGGATGTCCATAGCTCTTTGCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Inpp4a (ENSMUSG00000026113)
Transcript ID ENSMUST00000114933
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 691 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information