MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Sema4c (ENSMUSG00000026121)

Cross Reference

CCDS	CCDS48240.1
EMBL	S79463
GO	GO:0001843, GO:0005515, GO:0005615, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name	Sema4c-001
OTTP	OTTMUSP00000022842
OTTT	OTTMUST00000049349
protein_id	AAB35184.1
RefSeq_mRNA	NM_001126047.2
RefSeq_mRNA_predicted	XM_006495810.2

RefSeq_peptide	NP_001119519
RefSeq_peptide_predicted	XP_006495873.1
UCSC	uc007aqr.4
UniParc	UPI00000227E7
Uniprot/SWISSPROT	Q64151
Vega_transcript	OTTMUST00000049349, Sema4c-001
Vega_translation	178985, OTTMUSP00000022842

Definition

protein_id:ENSMUSP00000110643
translation:

MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTE
HSGLLYVGAREALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPY
NSSHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSAT
LNNFLGTEPVILRYMGTHHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFS
ERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAV
HTLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTD
PVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNF
THVVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQS
KKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQ
HVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTFGSQDLPAEQ
PGSFLYDTGLQALVVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPL
ENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPP
FRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLG
GGRNSNANGYVRLQLGGEDRGGSGHPLPELADELRRKLQQRQPLPDSNPEESSV

Chromosome

Length
Position(start - end)

6,500
36,549,539 - 36,556,040

Orient to Chromosome

minus

Link

Location : (1:36549539-36556040)
/

Detail Map

name	Ankrd39 (ENSMUSG00000079610)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Ankrd39 note : ankyrin repeat domain 39 [Source:MGI Symbol;Acc:MGI:1914816]

name	Sema4c (ENSMUSG00000026121)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Sema4c note : sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:MGI Symbol;Acc:MGI:109252]

name	D430040D24Rik (ENSMUSG00000087589)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : D430040D24Rik note : RIKEN cDNA D430040D24 gene [Source:MGI Symbol;Acc:MGI:2442526]

name	Ankrd39 (ENSMUSG00000079610)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000191706

name	Ankrd39 (ENSMUSG00000079610)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000001172

name	Ankrd39 (ENSMUSG00000079610)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000194894

name	Sema4c (ENSMUSG00000026121)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000191677

name	Sema4c (ENSMUSG00000026121)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000191642

name	Sema4c (ENSMUSG00000026121)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000195620

name	Sema4c (ENSMUSG00000026121)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000114991

name	Sema4c (ENSMUSG00000026121)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000193382

name	Sema4c (ENSMUSG00000026121)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000195339

name	Ankrd39 (ENSMUSG00000079610) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Ankrd39-003 Vega_transcript:OTTMUST00000126925 Uniprot/SPTREMBL:A0A0A6YXF8 EMBL:AC084391 EMBL:CH466536 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Ankrd39-003 Vega_translation:178979 Vega_translation:OTTMUSP00000068602 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 protein_id:EDL14493.1 OTTP:OTTMUSP00000068602 OTTT:OTTMUST00000126925 UniParc:UPI0001549EFC
definition	note : transcript_id=ENSMUST00000191706 protein_id : ENSMUSP00000141972 translation : MAAPHLCADGSCCSHPSAVPGVQQTLEEMDFDRGERGEAAALPAAGNLQPHLRERGLKEASNRVWSFRAWCRKAGFKAWQEAPRLLRLECGRESGRLP

name	Ankrd39 (ENSMUSG00000079610) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14883.1 Uniprot/SWISSPROT:Q9D2X0 RefSeq_peptide:NP_080517 RefSeq_mRNA:NM_026241.3 Vega_transcript:Ankrd39-001 Vega_transcript:OTTMUST00000126926 Uniprot/SPTREMBL:Q14A32 UCSC:uc007aqo.1 Fantom:2700069A19 Fantom:9130416N05 Fantom:A730036G03 EMBL:AK018681 EMBL:AK042896 EMBL:AK160231 EMBL:BC117004 EMBL:BC119100 EMBL:CH466536 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Ankrd39-001 Vega_translation:178980 Vega_translation:OTTMUSP00000068603 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 protein_id:AAI17005.1 protein_id:AAI19101.1 protein_id:BAB31340.1 protein_id:BAC31398.1 protein_id:BAE35703.1 protein_id:EDL14492.1 OTTP:OTTMUSP00000068603 OTTT:OTTMUST00000126926 UniParc:UPI0000020B34
definition	note : transcript_id=ENSMUST00000001172 protein_id : ENSMUSP00000001172 translation : MAAPHLCADGSCCSHPSAVPGVQQTLEEMDFDRGIWSAALNGDLGRVKYFIQKATDPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHGSNPWLVDNDGMTSLHKAAEKGHEDICSLLLQHSPALKAVRDRKARLACDLLPCNSGLWDLLAS

name	Ankrd39 (ENSMUSG00000079610) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_001297462.1 Vega_transcript:Ankrd39-002 Vega_transcript:OTTMUST00000126927 Uniprot/SPTREMBL:A0A0A6YWV1 UCSC:uc011wjm.1 EMBL:AC084391 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Ankrd39-002 Vega_translation:178981 Vega_translation:OTTMUSP00000068604 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000068604 OTTT:OTTMUST00000126927 UniParc:UPI00004759C9
definition	note : transcript_id=ENSMUST00000194894 protein_id : ENSMUSP00000141712 translation : MAAPHLCADGSCCSHPSAVPGVQQTLEEMDFDRGIWSAALNGDLGRVKYFIQKATDPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHGSNPWLVDNDGMTSLHKVCMSLPPSACIRLRRRVTRTFAPSCYNTAQP

name	Sema4c (ENSMUSG00000026121) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48240.1 Uniprot/SWISSPROT:Q64151 RefSeq_mRNA_predicted:XM_006495805.1 RefSeq_mRNA_predicted:XM_006495809.2 RefSeq_peptide_predicted:XP_006495868.1 RefSeq_peptide_predicted:XP_006495872.1 Vega_transcript:OTTMUST00000049351 Vega_transcript:Sema4c-003 UCSC:uc007aqr.4 EMBL:S79463 GO:GO:0001843 GO:GO:0005515 GO:GO:0005615 GO:GO:0014069 GO:GO:0016021 GO:GO:0021535 GO:GO:0021549 GO:GO:0030054 GO:GO:0030672 GO:GO:0032874 GO:GO:0042692 GO:GO:0045211 GO:GO:0071526 MGI_trans_name:Sema4c-003 Vega_translation:178982 Vega_translation:OTTMUSP00000022844 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005615 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005886 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0009790 goslim_goa:GO:0016023 goslim_goa:GO:0030154 goslim_goa:GO:0040011 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 goslim_goa:GO:0048870 protein_id:AAB35184.1 OTTP:OTTMUSP00000022844 OTTT:OTTMUST00000049351 UniParc:UPI00000227E7
definition	note : transcript_id=ENSMUST00000191677 protein_id : ENSMUSP00000141263 translation : MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTEHSGLLYVGAREALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNSSHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRYMGTHHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAVHTLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTDPVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNFTHVVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQHVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTFGSQDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGSGHPLPELADELRRKLQQRQPLPDSNPEESSV

name	Sema4c (ENSMUSG00000026121) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48240.1 Uniprot/SWISSPROT:Q64151 RefSeq_peptide:NP_001291259.1 RefSeq_mRNA:NM_001304330.1 RefSeq_mRNA_predicted:XM_006495807.1 RefSeq_mRNA_predicted:XM_006495808.1 RefSeq_peptide_predicted:XP_006495870.1 RefSeq_peptide_predicted:XP_006495871.1 Vega_transcript:OTTMUST00000049354 Vega_transcript:Sema4c-006 UCSC:uc056ycm.1 EMBL:S79463 GO:GO:0001843 GO:GO:0005515 GO:GO:0005615 GO:GO:0005615 GO:GO:0014069 GO:GO:0016021 GO:GO:0021535 GO:GO:0021549 GO:GO:0030054 GO:GO:0030672 GO:GO:0032874 GO:GO:0032874 GO:GO:0042692 GO:GO:0042692 GO:GO:0045211 GO:GO:0071526 MGI_trans_name:Sema4c-006 Vega_translation:178983 Vega_translation:OTTMUSP00000022847 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005615 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005886 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0009790 goslim_goa:GO:0016023 goslim_goa:GO:0030154 goslim_goa:GO:0040011 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 goslim_goa:GO:0048870 protein_id:AAB35184.1 OTTP:OTTMUSP00000022847 OTTT:OTTMUST00000049354 UniParc:UPI00000227E7
definition	note : transcript_id=ENSMUST00000191642 protein_id : ENSMUSP00000142284 translation : MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTEHSGLLYVGAREALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNSSHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRYMGTHHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAVHTLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTDPVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNFTHVVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQHVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTFGSQDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGSGHPLPELADELRRKLQQRQPLPDSNPEESSV

name	Sema4c (ENSMUSG00000026121) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48240.1 Uniprot/SWISSPROT:Q64151 RefSeq_peptide:NP_001291258.1 RefSeq_mRNA:NM_001304329.1 Vega_transcript:OTTMUST00000049350 Vega_transcript:Sema4c-002 UCSC:uc007aqq.4 EMBL:S79463 GO:GO:0001843 GO:GO:0005515 GO:GO:0005615 GO:GO:0014069 GO:GO:0016021 GO:GO:0021535 GO:GO:0021549 GO:GO:0030054 GO:GO:0030672 GO:GO:0032874 GO:GO:0042692 GO:GO:0045211 GO:GO:0071526 MGI_trans_name:Sema4c-002 Vega_translation:178984 Vega_translation:OTTMUSP00000022843 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005615 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005886 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0009790 goslim_goa:GO:0016023 goslim_goa:GO:0030154 goslim_goa:GO:0040011 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 goslim_goa:GO:0048870 protein_id:AAB35184.1 OTTP:OTTMUSP00000022843 OTTT:OTTMUST00000049350 UniParc:UPI00000227E7
definition	note : transcript_id=ENSMUST00000195620 protein_id : ENSMUSP00000141527 translation : MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTEHSGLLYVGAREALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNSSHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRYMGTHHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAVHTLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTDPVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNFTHVVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQHVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTFGSQDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGSGHPLPELADELRRKLQQRQPLPDSNPEESSV

name	Sema4c (ENSMUSG00000026121) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48240.1 Uniprot/SWISSPROT:Q64151 RefSeq_peptide:NP_001119519 RefSeq_mRNA:NM_001126047.2 RefSeq_mRNA_predicted:XM_006495810.2 RefSeq_peptide_predicted:XP_006495873.1 Vega_transcript:OTTMUST00000049349 Vega_transcript:Sema4c-001 UCSC:uc007aqr.4 EMBL:S79463 GO:GO:0001843 GO:GO:0005515 GO:GO:0005615 GO:GO:0014069 GO:GO:0016021 GO:GO:0021535 GO:GO:0021549 GO:GO:0030054 GO:GO:0030672 GO:GO:0032874 GO:GO:0042692 GO:GO:0045211 GO:GO:0071526 MGI_trans_name:Sema4c-001 Vega_translation:178985 Vega_translation:OTTMUSP00000022842 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005615 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005886 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0009790 goslim_goa:GO:0016023 goslim_goa:GO:0030154 goslim_goa:GO:0040011 goslim_goa:GO:0043226 goslim_goa:GO:0048646 goslim_goa:GO:0048856 goslim_goa:GO:0048870 protein_id:AAB35184.1 OTTP:OTTMUSP00000022842 OTTT:OTTMUST00000049349 UniParc:UPI00000227E7
definition	note : transcript_id=ENSMUST00000114991 protein_id : ENSMUSP00000110643 translation : MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTEHSGLLYVGAREALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNSSHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRYMGTHHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAVHTLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTDPVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNFTHVVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQHVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTFGSQDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGSGHPLPELADELRRKLQQRQPLPDSNPEESSV

name	Sema4c (ENSMUSG00000026121) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049353 Vega_transcript:Sema4c-005 Uniprot/SPTREMBL:A0A0A6YXK9 EMBL:AC084391 GO:GO:0005515 GO:GO:0005615 GO:GO:0032874 GO:GO:0042692 MGI_trans_name:Sema4c-005 Vega_translation:178986 Vega_translation:OTTMUSP00000022846 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005615 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0048856 OTTP:OTTMUSP00000022846 OTTT:OTTMUST00000049353 UniParc:UPI0000F22056
definition	note : transcript_id=ENSMUST00000193382 protein_id : ENSMUSP00000142034 translation : MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGA

name	Sema4c (ENSMUSG00000026121) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049352 Vega_transcript:Sema4c-004 Uniprot/SPTREMBL:A0A0A6YX48 EMBL:AC084391 GO:GO:0005515 GO:GO:0005615 GO:GO:0032874 GO:GO:0042692 MGI_trans_name:Sema4c-004 Vega_translation:178987 Vega_translation:OTTMUSP00000022845 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005615 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0048856 OTTP:OTTMUSP00000022845 OTTT:OTTMUST00000049352 UniParc:UPI0000F22055
definition	note : transcript_id=ENSMUST00000195339 protein_id : ENSMUSP00000141833 translation : MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSG

name
type	misc_feature
link
xref
definition	note : contig AC084391.1 1..158328(-1)

name	Ankrd39 (ENSMUSG00000079610)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000126929 Vega_transcript:OTTMUST00000126929 UCSC:uc007aqp.1 MGI_trans_name:Ankrd39-006 OTTT:OTTMUST00000126929
definition	note : processed_transcript note : transcript_id=ENSMUST00000192954

name	Ankrd39 (ENSMUSG00000079610)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000126930 Vega_transcript:OTTMUST00000126930 MGI_trans_name:Ankrd39-004 OTTT:OTTMUST00000126930
definition	note : retained_intron note : transcript_id=ENSMUST00000191713

name	Sema4c (ENSMUSG00000026121)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049356 Vega_transcript:OTTMUST00000049356 MGI_trans_name:Sema4c-008 OTTT:OTTMUST00000049356
definition	note : retained_intron note : transcript_id=ENSMUST00000191785

name	Sema4c (ENSMUSG00000026121)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000049355 Vega_transcript:OTTMUST00000049355 MGI_trans_name:Sema4c-007 OTTT:OTTMUST00000049355
definition	note : retained_intron note : transcript_id=ENSMUST00000195160

name	D430040D24Rik (ENSMUSG00000087589)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000127462 Vega_transcript:OTTMUST00000127462 Clone_based_vega_transcript:AC084391.4-002 MGI_trans_name:D430040D24Rik-002 OTTT:OTTMUST00000127462
definition	note : retained_intron note : transcript_id=ENSMUST00000194426

name	D430040D24Rik (ENSMUSG00000087589)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000051775 Vega_transcript:OTTMUST00000051775 Clone_based_vega_transcript:AC084391.4-001 MGI_trans_name:D430040D24Rik-001 OTTT:OTTMUST00000051775
definition	note : antisense note : transcript_id=ENSMUST00000149224

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Sema4c (ENSMUSG00000026121)
Transcript ID	ENSMUST00000114991

Reports
substitution
cSNPs	11
Insertion	9
Deletion	21
SNPs	+1kb 36558497(c.-2457T>C), 36558524(c.-2484A>G), 36559139(c.-3099A>G), 36559170(c.-3130G>A), 36559202(c.-3162A>G), 36559205(c.-3165T>C), 36559302(c.-3262T>C), 36559612(c.-3572T>C), 36560042(c.-4002G>A), 36560115(c.-4075G>T), 36560121(c.-4081T>G), 36560128(c.-4088T>G), 36560523(c.-4483A>G), 36561381(c.-5341T>C), 36561624(c.-5584C>T), 36561979(c.-5939C>G), 36562073(c.-6033T>C), 36562231(c.-6191G>A), 36562612(c.-6572C>T), 36562812(c.-6772G>C), 36563135(c.-7095A>G), 5'UTR CDS 36549668(c.2376T>C), 36549857(c.2187G>A), 36550187(c.1857G>A), 36550806(c.1466G>A), 36551777(c.1392G>A), 36552102(c.1155A>G), 36552859(c.822A>G), 36553324(c.534A>G), 36553725(c.411C>T), 36553758(c.378T>C), 36553772(c.364T>G), 3'UTR 36549047(c.492C>T), 36549207(c.332G>A), 36549211(c.328A>G), 36549351(c.188A>C), 36549535(c.4G>A), INTRON 36550405(c.1676-37A>G), 36550440(c.1675+66T>G), 36550853(c.1444-25T>C), 36550860(c.1444-32T>C), 36550929(c.1444-101T>C), 36551075(c.1444-247A>G), 36551260(c.1444-432T>C), 36551261(c.1444-433A>G), 36551306(c.1443+420G>A), 36551522(c.1443+204C>T), 36551916(c.1330+11C>T), 36552203(c.1107+49A>G), 36552616(c.962+103G>T), 36552632(c.962+87G>A), 36552916(c.787-22T>G), 36553193(c.634+31A>G), 36553194(c.634+30C>T), 36553221(c.634+3G>A), 36553592(c.421-25A>G), 36553874(c.321+52T>C), 36554054(c.259-66A>G), 36554067(c.259-79A>G), 36554512(c.110-112C>T), 36554538(c.110-138G>C), 36554875(c.110-475C>T), 36554930(c.110-530A>G), 36555011(c.110-611T>C), 36555034(c.110-634T>G), 36555213(c.109+719T>C), 36555345(c.109+587T>G), 36555470(c.109+462A>G), 36555638(c.109+294G>C), 36555663(c.109+269G>C), 36555841(c.109+91A>C), 36556123(c.-37-46C>T), 36556362(c.-37-285T>G), 36556761(c.-37-684C>T), 36556874(c.-37-797T>C), 36556957(c.-37-880T>C), 36557049(c.-38+967T>G), 36557936(c.-38+80A>G), -1kb 36543744(c.5795T>C), 36543757(c.5782T>C), 36543888(c.5651C>A), 36544017(c.5522A>G), 36544169(c.5370C>A), 36544326(c.5213T>C), 36544409(c.5130T>G), 36544502(c.5037C>T), 36544515(c.5024A>G), 36544549(c.4990A>T), 36544704(c.4835G>A), 36544740(c.4799T>C), 36545068(c.4471C>T), 36545266(c.4273A>T), 36545469(c.4070A>G), 36545777(c.3762C>T), 36546368(c.3171A>T), 36546859(c.2680G>A), 36546880(c.2659G>T), 36547196(c.2343C>T), 36547499(c.2040T>A), 36547595(c.1944G>A), 36547761(c.1778C>A), 36547795(c.1744C>T), 36547946(c.1593G>A), 36548078(c.1461G>A), 36548097(c.1442C>T), 36548363(c.1176C>G), 36548385(c.1154A>C),
Insertions	+1kb 36560129 (c.-4090_-4089insGTGG), 36560556 (c.-4519_-4517dupAAA), 36563179 (c.-7140_-7139insCCT), 5'UTR CDS 3'UTR INTRON 36553359 (c.518-20_518-19insC), 36555428 (c.109+503dupC), 36555694 (c.109+237_109+238insGACAGACA), 36556375 (c.-37-299dupG), -1kb 36544157 (c.5380_5381dupAC), 36546368 (c.3170_3171insGT),
Deletions	+1kb 36558825 (c.-2787_-2786delAA), 36559202 (c.-3163delT), 36559667 (c.-3631_-3628delTTGT), 36560318 (c.-4279delT), 5'UTR CDS 3'UTR 36549505 (c.31_33delGGT), INTRON 36553401 (c.518-65_518-62delACTT), 36553406 (c.517+61_517+64delTACT), 36554790 (c.110-393_110-391delTGG), 36557312 (c.-38+703delC), -1kb 36544646 (c.4892delA), 36544657 (c.4880_4881delTT), 36544670 (c.4866_4868delTTT), 36545403 (c.4135delT), 36545581 (c.3957delT), 36545672 (c.3858_3866delCCCTTCCTG), 36546545 (c.2993delA), 36547664 (c.1874delG), 36547814 (c.1724delG), 36547915 (c.1622_1623delAC), 36548261 (c.1269_1277delGTCTCGAAT), 36548357 (c.*1181delG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	9
non-synonymous num	2
synonymous substitutions	36549668 (p.Arg792Arg), 36549857 (p.Glu729Glu), 36550187 (p.Gln619Gln), 36551777 (p.Leu464Leu), 36552102 (p.Glu385Glu), 36552859 (p.Lys274Lys), 36553324 (p.Ser178Ser), 36553725 (p.Cys137Cys), 36553758 (p.Tyr126Tyr),
non-synonymous substitutions	36550806 (p.Arg489His), 36553772 (p.Ser122Ala),
B6 transcript (ENSMUST00000114991)	MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTE HSGLLYVGAREALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPY NSSHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSAT LNNFLGTEPVILRYMGTHHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFS ERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAV HTLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTD PVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNF THVVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQS KKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQ HVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTFGSQDLPAEQ PGSFLYDTGLQALVVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPL ENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPP FRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLG GGRNSNANGYVRLQLGGEDRGGSGHPLPELADELRRKLQQRQPLPDSNPEESSV*
MSMv4 transcript	MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTE HSGLLYVGAREALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPY NASHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSAT LNNFLGTEPVILRYMGTHHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFS ERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAV HTLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTD PVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNF THVVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQS KKVLFAGSHSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQ HVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTFGSQDLPAEQ PGSFLYDTGLQALVVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPL ENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPP FRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLG GGRNSNANGYVRLQLGGEDRGGSGHPLPELADELRRKLQQRQPLPDSNPEESSV*
homology	99.76 (835 / 835)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Sema4c (ENSMUSG00000026121)
Transcript ID	ENSMUST00000114991


..........GTCCCAGTAAAGACCCAATTGTTACTGAAACCAAACTGGGCTGCCATCCT
CGATTACTCCCATTGCTCTTCTGCTCTTCACTTCTCAGGTGCCACGTTTTAGCCCAGAAC
AAAAGCTGCTGTCGGACTGATTTATACTCCAGATTTTACTTATGGGGTCTGAAGTGTTTT
TTCCCCTCCAGGACTGCCCCCTGGGGCTCAAAGTTACCACGGAAACCTCCAGGCCTCCTT
CCCTTCGTCCCTGTCCTTTGATTCTGGTTAGGGGTGGTCTCCAGGTACCGCTGGGGCAGT
TTCCCCGAGGTTTCTCAGTCCACCTGCCCACTGGAGGACCAGCTGGCTGGAAGGATTTGC
CAGCCAGCACCGTCCAGGAGGCCACAGCTACAAGTTACTTCTAGGAGCGCCTGTGGGCGG
AGGCTGGCAGTTCTGAAGGTGGTGGTGGTTCGCTGCGTGGCTCCCTCCAGCCTCTTTCAT
CTGAACCGTGGCGCGCTCGTGCCTCTAGTTAATCAGCCTTCCAAGCCACACCAAGAGTCA
TTTCCCGGGGGTAGGCTCTGCTGGAGCCTGGAAACTAGGAGCTGCCTGCAGTCTTGGGGT
CTCCTCTGCCTGTGAGCTGCTCCTTCCAGTCCAAGGGTTAGGGCCAGAAAGGAGGACAAC
TTTGGAGTCAAAAGACTGACCACTGTGGTTAGCACCTGAGAGAACCTTCAGTTTCTTCTC
TTGCTACGCCACCCCCTTCGGGTACAAGTCCCAAAATGGTTTGCCAGTTTTCGTTCCCGT
AACTGGAGCGTGGGGAAGCCCCTCAACCCTTCCAGAGAGCCCATCCCGCCTCAGGGCTTG
AAGGCACACTTCACCAGGTGAGCGCAGTTCGTGCAGTTCCCGGTGGCAACGCCTGGAGTC
CCTCCCCGCCCCCCACCCCGCCCCCTCCCCGCCTCCGGCCGCTGTGGCGCAGACCTTGAC
TCACGAGCTGCAAGAGTCGTAAAGGGTCCCCAAGCCTCAGTGCCGGGTAA
GCAAGGCAGCGGGTCGCAGCCCCCTCCTGGGCGGGCCTTCGCGTCCCGCCCCCGGCCACCACTCGACACCCTCTGCCTGACGTCAAGGGGTTGGGGGCGGAGAGCGGCGGTGGCGGCGGCTGCAGCGGAGAAAGAACCGGCGCCCGGCGCGGTGGAGCGCCGAATCCGAGCTCAGGGGCGCCGAGAGCCGTGCTGAGACCGAGGGGCGGTGGCACGGGACAGCCTTAGCGTGCTGGCGGGCGGGCGCAGTCTGGAGCGGCGCGGGGGCAGGGGAGGACGGTGGCCGGAGTCAAACGCGAGGGCAGCGCCCAGGGATTGGAGCTGCACGAAAGAG
GTGAGTGAGGCCGGAGCGGTGGGGC..........TGACCAGTTTCTTTTCCTTCAGCAG
GGCTGCTGGACTGAAGTTTAGACCCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGCAGCAGGGCTGTGGGGCCTGGGCATCGGGGCTGAGATGTGGTGGAACCTTGTGCCCCGGAAGACAGTATCTTCTGGGG
GTGAGTGCCTGAAGCATGGGAGGCA..........CTTGTTCTAATATCTGTTTCTGCAG
AGCTGGTCACAGTAGTGAGGCGGTTCTCCCAGACAGGCATCCAGGACTTCCTGACACTGACCCTGACAGAACATTCTGGCCTTTTATATGTGGGGGCCCGAGAGGCGCTGTTTGCCTTCAGTGTAGAGGCTCTGGAGCTGCAAGGAGCG
GTGAGAGGTGGGGCAGTGGGAGGCA..........GCTGATGTGTCTGTCCAATCCTCAG
ATCTCTTGGGAGGCTCCAGCTGAGAAGAAAATTGAATGTACCCAGAAAGGGAAGAGCAACCAG
GTGGGTGCTTAGAGAGCTTCCCCTG..........AACCTGTATACCTTTCTCTCCAAAG
ACCGAATGCTTCAACTTCATCCGCTTCCTTCAGCCATACAATGCCTCCCATCTGTACGTCTGCGGCACCTATGCCTTCCAGCCCAAGTGTACCTACATC
GTGAGTGGTTCCCCCTCTCTTTGGG..........GTCTTCGATGTCTTCCTGCCCCTAG
AACATGCTCACGTTCACCTTGGACCGTGCAGAATTTGAGGATGGGAAGGGTAAATGCCCATATGACCCAGCTAAGGGTCACACCGGACTCCTTGTGG
GTGAGTGGCTGCTGCCAGCACAGAG..........CTCTGACCGCTGTTGTCTCCCGCAG
ACGGTGAGCTGTACTCGGCCACACTCAATAACTTCCTGGGCACAGAGCCGGTTATCCTTCGATACATGGGGACCCACCACTCCATCAAGACAGAGTACCTGGCTTTTTGGCTGAATG
GTAAGTCATGGGATGGGACTGGGGA..........ACTGGCCCTTTTTTCTTCGTCCCAG
AACCCCACTTTGTAGGCTCTGCCTTTGTCCCTGAGAGTGTGGGAAGCTTCACGGGAGACGATGACAAGATCTACTTCTTCTTCAGTGAGCGGGCAGTGGAGTATGACTGCTATTCCGAGCAGGTGGTGGCTCGTGTGGCGAGAGTCTGTAAG
GTACCAAGTTCCGCAGTGGTGGGCA..........GCCGTGTCTCCTTGCCATCTGCCAG
GGTGACATGGGGGGAGCACGGACGCTGCAGAAGAAGTGGACGACGTTCCTGAAGGCTCGGTTGGTGTGCTCAGCCCCTGACTGGAAGGTCTACTTCAACCAGCTGAAGGCGGTGCACACCCTGCGGGGCGCCTCTTGGCACAACACCACCTTCTTCGGGGTTTTTCAAGCGCGATG
GTAAGCGGCTATGGGGTAGCTGGGG..........GACTTCCAAGGTCCTTCTTTAACAG
GGGCGATATGGACCTGTCTGCAGTTTGTGAGTACCAGTTGGAACAGATCCAGCAAGTGTTTGAGGGTCCCTACAAGGAGTACAGTGAGCAAGCCCAGAAGTGGGCCCGCTATACTGACCCGGTACCCAGCCCTCGGCCTGGTTCG
GTGAGTTTTCGGCTTGGGGATGTAT..........CTCCCCACGCCCCTCCCCGACACAG
TGTATCAACAACTGGCACCGAGACAATGGCTACACCAGTTCCCTGGAGCTGCCGGACAACACCCTCAACTTCATCAAGAAGCACCCCCTGATGGAGGACCAGGTGAAGCCTCGGTTGGGCCGCCCCCTACTTGTGAAGAAGAACACTAACTTCACACACGTGGTGGCCGACAGGGTCCCAGGGCTTGATGGTGCCACCTATACAGTGTTGTTCATTGGTACAG
GTAGGCGCTTTAGGTGTGCCCAAGG..........TTGCATATTCCCATCACCTCTCCAG
GAGATGGCTGGCTGCTGAAGGCTGTGAGCCTGGGGCCCTGGATCCACATGGTGGAGGAACTACAGGTGTTTGACCAGGAGCCAGTGGAAAGTCTGGTGCTGTCTCAGAGCAAG
GTAGTAAGACTGGGCCACACGCACC..........CACCCTGTGCTTTGTTTTACTGTAG
AAGGTGCTCTTTGCTGGCTCCCACTCTCAGCTGGTTCAGCTGTCTCTGGCCGACTGCACAAAGTACCGTTTCTGTGTAGACTGTGTCCTGGCCAGGGACCCTTACTGTGCCTGGAATGTCAACACCAGCCGCTGTGTGGCCACCACCAGTGGTCGCTCGGG
GTGAGTCAGTCGTCTCTGAGTGCCA..........TGATGCCACTTCTCTTCCCTACCAG
GTCCTTTCTGGTCCAACATGTGGCGAACTTGGACACTTCAAAGATGTGTAACCAGTATGGCATTAAAAAAG
GTGAGCTGTTTTCCTTTTGTTCCCT..........TTCTCTCTCATTTCTGCCTCTGCAG
TCAGATCTATTCCCAAGAACATCACCGTTGTGTCAGGCACAGACCTGGTCCTACCCTGCCACCTCTCGTCCAATTTGGCCCATGCCCACTGGACCTTCGGAAGCCAGGACCTGCCTGCAGAACAACCTGGCTCCTTTCTTTATGACACGGGACTCCAGGCGCTGGTGGTGATGGCCGCACAATCCCGTCACTCTGGACCCTATCGTTGCTATTCAGAGGAGCAGGGGACAAGACTGGCTGCAGAAAGCTACCTTGTTGCTGTCGTGGCCGGCTCGTCGGTGACACTGGAGGCACGGGCTCCCTTGGAAAACCTGGGGCTCGTGTGGCTCGCTGTGGTGGCCCTGGGGGCTGTGTGCCTGGTGCTGCTGCTGCTGGTCCTATCGCTCCGCCGGCGACTTCGAGAAGAGCTAGAAAAGGGTGCCAAGGCATCTGAGAGGACACTGGTGTACCCCTTGGAACTGCCCAAGGAGCCTGCCAGTCCCCCCTTCCGTCCTGGCCCCGAAACTGATGAAAAACTTTGGGATCCTGTCGGGTACTACTATTCGGATGGCTCTCTCAAGATTGTGCCTGGTCACGCCCGGTGCCAGCCTGGGGGTGGGCCCCCTTCCCCACCTCCTGGCATACCTGGCCAGCCTCTGCCTTCTCCAACTCGGCTCCACCTAGGAGGTGGTCGGAACTCAAATGCCAATGGTTATGTGCGCTTACAGTTGGGCGGAGAGGACCGAGGAGGATCTGGGCACCCACTGCCTGAGCTCGCGGATGAATTACGACGGAAACTACAACAGCGCCAGCCGCTGCCTGACTCCAACCCAGAGGAGTCTTCAGTATGAGGGAACCCCCCCACCTCATTGGCGGGGGGGGGTCTCATGGGAGGTGCACTCTTAACTTTTGCACAGGCACCAGCTACCTCAGGGACATGGCAGGGGCACTTGCTCTGCCTGGGACAGACACTGCCCAGCATTTGCCCGGCCGTGAGGACCTGCTCAGCATGGGCACTGCCACTTGGTGTGGCTCACCCGGACTTCAGCCTCACAGGAGACACACCCTCCTCTGTGAATTTGAGACATGTGGGACCCCAGCAGCCAAAACTTTGCAAGGAAGAGGTTTCAAGATGTGGGCGTGTTTGTGCATATATGTGTTGGTATGCATGTGGAAGAGTGTATGTGTGTGTGTGTGTGTGTTGTAACTTTCCTGTCTCTATCACGTCTTCCCTTGGCCTGGGGTCCTCCTGGTTGAGTCTTTGGAGCTATGAAGGGGAAGGGGGTCATAGCACTTTGCTTCTCCTACCCCCAGCTGTCCCAAGCTTTGGGGCAGTGATGTATATACGGGGAAGGGAAGGACAGGGTGTTGTACCCCTTTTGGGGGAGTGCGGGACTCGGGGGTGGGCCTAGCCCTGCTCCTAGGGCTGTGAATGTTTTCAGGGCGGGGGTTGGGGGTGGAGATGGAACCTCCTGCTTCAGGGGGAGGGGTGGGCAGGGCCTCCCACTTGCCCTCCGGGTTCGGTGGTATTTTATATTTGCGCTCTTCTGACAGGGCTGGGAAGGGTTGTTGGGGGAGGGAAGGGAGGAGGTGGGCATGCTATGGATACTGGCCTATCCTCTCCCTGCTCTGGGAAAAGGGCTAACAGTGTAACTTATTGTGTCCCCACATATTTATTTGTTGTAAATATTTGAGTATTTTTATATTGACAAATAAAATGGAGAAAATGAAATTTAACCCTGCCACAC
AGATATTTTGACTCAAACCCACTTATTGACCTAAGAGGGACTCATCCTTTGGTCTGGGCC
ATCATGGTCTTAATGCCTGTCCGTGCATCTCTGGAGGGGCCAGCTGAGACTCAAGTGTTT
TCCCACAGTGATGCCTATGGGACTGGGAGCCAGAGCAGGGCTACTCTGCTTGGGAGCTGG
ACTTGGCCTGGTGCCACAGGGAAACAAGGCAGAGCGTTCGGGAAGAGGAGGAGAAGGAGA
CGGTCTTCCCAGAACTCTAGGGAGGGTGAGCAGGGAGTCAGGGGCTGAAGGAGAGGCTTC
TCAAGTTGTGTGGACAGTGTCTTTATAAAGATGGAGATTAGGACAAGCTCCGTGGGAGGG
GAAGAATGCTAGTCTCGAATGTCCTATCTGGGTAGGGATAGTCCCCTATTGCCACCCAGT
CAGTATCAAGCCCTTGTCTTAGTGAGGGAGTGGTGTAGGCCCAGATGTTCCTGGGAAAAA
CAACAGGCCCAGCCTGGATTCATTTCTGAGCGCCCTTAATGAGAGCTGCCTGCCAATCGG
ATTTTGAGAAGGAAAATAGGAAGAAGGAAAAAAAAAAGACATTTTAAGATTTTGTGTTGT
GCTAAATTTGATGCTGTTGTTGGCTGCAATTTGGACACACCTGGTTTAGATCAATCTAAC
CGGTACATAGGAACAGAGACCACAGTGAGCTCTCTACCCACCCTTAGCTGCCACCCCACC
CCCCACCCCCCATACACTTGGATGACCCTTGAGCAGGCTGCTGTTTCCCTGAGTGTGGGT
CAGAAGAGGCTGGGAAATACTTGAGTGTGTTTCCCTTAGCTCAGTTGTCTGCCCAGTGGG
TGTTGGTAACCAGCGCCCACTGAGTGGGCAGAGGCTTAAGAACAAAGGTGGTCTACCAGG
TCCTTGCCCTCAGGCCACCTGCTTCCTGATGGATTGCTAAAGAACGAGGGTCAGAGTGTT
AGTAGCTTTCTGGCGGGTCACTGATCTGACCATGGATGGC..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GTCCCAGTAAAGACCCAATTGTTACTGAAACCAAACTGGGCTGCCATCCT CGATTACTCCCATTGCTCTTCTGCTCTTCACTTCTCAGGTGCCACGTTTTAGCCCAGAAC AAAAGCTGCTGTCGGACTGATTTATACTCCAGATTTTACTTATGGGGTCTGAAGTGTTTT TTCCCCTCCAGGACTGCCCCCTGGGGCTCAAAGTTACCACGGAAACCTCCAGGCCTCCTT CCCTTCGTCCCTGTCCTTTGATTCTGGTTAGGGGTGGTCTCCAGGTACCGCTGGGGCAGT TTCCCCGAGGTTTCTCAGTCCACCTGCCCACTGGAGGACCAGCTGGCTGGAAGGATTTGC CAGCCAGCACCGTCCAGGAGGCCACAGCTACAAGTTACTTCTAGGAGCGCCTGTGGGCGG AGGCTGGCAGTTCTGAAGGTGGTGGTGGTTCGCTGCGTGGCTCCCTCCAGCCTCTTTCAT CTGAACCGTGGCGCGCTCGTGCCTCTAGTTAATCAGCCTTCCAAGCCACACCAAGAGTCA TTTCCCGGGGGTAGGCTCTGCTGGAGCCTGGAAACTAGGAGCTGCCTGCAGTCTTGGGGT CTCCTCTGCCTGTGAGCTGCTCCTTCCAGTCCAAGGGTTAGGGCCAGAAAGGAGGACAAC TTTGGAGTCAAAAGACTGACCACTGTGGTTAGCACCTGAGAGAACCTTCAGTTTCTTCTC TTGCTACGCCACCCCCTTCGGGTACAAGTCCCAAAATGGTTTGCCAGTTTTCGTTCCCGT AACTGGAGCGTGGGGAAGCCCCTCAACCCTTCCAGAGAGCCCATCCCGCCTCAGGGCTTG AAGGCACACTTCACCAGGTGAGCGCAGTTCGTGCAGTTCCCGGTGGCAACGCCTGGAGTC CCTCCCCGCCCCCCACCCCGCCCCCTCCCCGCCTCCGGCCGCTGTGGCGCAGACCTTGAC TCACGAGCTGCAAGAGTCGTAAAGGGTCCCCAAGCCTCAGTGCCGGGTAA
1	EXON 1	36,558,016	36,558,349	-	-	334	GCAAGGCAGCGGGTCGCAGCCCCCTCCTGGGCGGGCCTTCGCGTCCCGCCCCCGGCCACC ACTCGACACCCTCTGCCTGACGTCAAGGGGTTGGGGGCGGAGAGCGGCGGTGGCGGCGGC TGCAGCGGAGAAAGAACCGGCGCCCGGCGCGGTGGAGCGCCGAATCCGAGCTCAGGGGCG CCGAGAGCCGTGCTGAGACCGAGGGGCGGTGGCACGGGACAGCCTTAGCGTGCTGGCGGG CGGGCGCAGTCTGGAGCGGCGCGGGGGCAGGGGAGGACGGTGGCCGGAGTCAAACGCGAG GGCAGCGCCCAGGGATTGGAGCTGCACGAAAGAG
	INTRON 1 - 2	36,556,078	36,558,015			1,938	GTGAGTGAGGCCGGAGCGGTGGGGC..........TGACCAGTTTCTTTTCCTTCAGCAG
2	EXON 2	36,555,932	36,556,077	-	1	146	GGCTGCTGGACTGAAGTTTAGACCCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTG GCTGCTGGCAGCAGGGCTGTGGGGCCTGGGCATCGGGGCTGAGATGTGGTGGAACCTTGT GCCCCGGAAGACAGTATCTTCTGGGG
	INTRON 2 - 3	36,554,401	36,555,931			1,531	GTGAGTGCCTGAAGCATGGGAGGCA..........CTTGTTCTAATATCTGTTTCTGCAG
3	EXON 3	36,554,252	36,554,400	1	0	149	AGCTGGTCACAGTAGTGAGGCGGTTCTCCCAGACAGGCATCCAGGACTTCCTGACACTGA CCCTGACAGAACATTCTGGCCTTTTATATGTGGGGGCCCGAGAGGCGCTGTTTGCCTTCA GTGTAGAGGCTCTGGAGCTGCAAGGAGCG
	INTRON 3 - 4	36,553,989	36,554,251			263	GTGAGAGGTGGGGCAGTGGGAGGCA..........GCTGATGTGTCTGTCCAATCCTCAG
4	EXON 4	36,553,926	36,553,988	0	0	63	ATCTCTTGGGAGGCTCCAGCTGAGAAGAAAATTGAATGTACCCAGAAAGGGAAGAGCAAC CAG
	INTRON 4 - 5	36,553,815	36,553,925			111	GTGGGTGCTTAGAGAGCTTCCCCTG..........AACCTGTATACCTTTCTCTCCAAAG
5	EXON 5	36,553,716	36,553,814	0	0	99	ACCGAATGCTTCAACTTCATCCGCTTCCTTCAGCCATACAATGCCTCCCATCTGTACGTC TGCGGCACCTATGCCTTCCAGCCCAAGTGTACCTACATC
	INTRON 5 - 6	36,553,568	36,553,715			148	GTGAGTGGTTCCCCCTCTCTTTGGG..........GTCTTCGATGTCTTCCTGCCCCTAG
6	EXON 6	36,553,471	36,553,567	0	1	97	AACATGCTCACGTTCACCTTGGACCGTGCAGAATTTGAGGATGGGAAGGGTAAATGCCCA TATGACCCAGCTAAGGGTCACACCGGACTCCTTGTGG
	INTRON 6 - 7	36,553,341	36,553,470			130	GTGAGTGGCTGCTGCCAGCACAGAG..........CTCTGACCGCTGTTGTCTCCCGCAG
7	EXON 7	36,553,224	36,553,340	1	1	117	ACGGTGAGCTGTACTCGGCCACACTCAATAACTTCCTGGGCACAGAGCCGGTTATCCTTC GATACATGGGGACCCACCACTCCATCAAGACAGAGTACCTGGCTTTTTGGCTGAATG
	INTRON 7 - 8	36,553,131	36,553,223			93	GTAAGTCATGGGATGGGACTGGGGA..........ACTGGCCCTTTTTTCTTCGTCCCAG
8	EXON 8	36,552,979	36,553,130	1	0	152	AACCCCACTTTGTAGGCTCTGCCTTTGTCCCTGAGAGTGTGGGAAGCTTCACGGGAGACG ATGACAAGATCTACTTCTTCTTCAGTGAGCGGGCAGTGGAGTATGACTGCTATTCCGAGC AGGTGGTGGCTCGTGTGGCGAGAGTCTGTAAG
	INTRON 8 - 9	36,552,895	36,552,978			84	GTACCAAGTTCCGCAGTGGTGGGCA..........GCCGTGTCTCCTTGCCATCTGCCAG
9	EXON 9	36,552,719	36,552,894	0	2	176	GGTGACATGGGGGGAGCACGGACGCTGCAGAAGAAGTGGACGACGTTCCTGAAGGCTCGG TTGGTGTGCTCAGCCCCTGACTGGAAGGTCTACTTCAACCAGCTGAAGGCGGTGCACACC CTGCGGGGCGCCTCTTGGCACAACACCACCTTCTTCGGGGTTTTTCAAGCGCGATG
	INTRON 9 - 10	36,552,397	36,552,718			322	GTAAGCGGCTATGGGGTAGCTGGGG..........GACTTCCAAGGTCCTTCTTTAACAG
10	EXON 10	36,552,252	36,552,396	2	0	145	GGGCGATATGGACCTGTCTGCAGTTTGTGAGTACCAGTTGGAACAGATCCAGCAAGTGTT TGAGGGTCCCTACAAGGAGTACAGTGAGCAAGCCCAGAAGTGGGCCCGCTATACTGACCC GGTACCCAGCCCTCGGCCTGGTTCG
	INTRON 10 - 11	36,552,150	36,552,251			102	GTGAGTTTTCGGCTTGGGGATGTAT..........CTCCCCACGCCCCTCCCCGACACAG
11	EXON 11	36,551,927	36,552,149	0	1	223	TGTATCAACAACTGGCACCGAGACAATGGCTACACCAGTTCCCTGGAGCTGCCGGACAAC ACCCTCAACTTCATCAAGAAGCACCCCCTGATGGAGGACCAGGTGAAGCCTCGGTTGGGC CGCCCCCTACTTGTGAAGAAGAACACTAACTTCACACACGTGGTGGCCGACAGGGTCCCA GGGCTTGATGGTGCCACCTATACAGTGTTGTTCATTGGTACAG
	INTRON 11 - 12	36,551,839	36,551,926			88	GTAGGCGCTTTAGGTGTGCCCAAGG..........TTGCATATTCCCATCACCTCTCCAG
12	EXON 12	36,551,726	36,551,838	1	0	113	GAGATGGCTGGCTGCTGAAGGCTGTGAGCCTGGGGCCCTGGATCCACATGGTGGAGGAAC TACAGGTGTTTGACCAGGAGCCAGTGGAAAGTCTGGTGCTGTCTCAGAGCAAG
	INTRON 12 - 13	36,550,829	36,551,725			897	GTAGTAAGACTGGGCCACACGCACC..........CACCCTGTGCTTTGTTTTACTGTAG
13	EXON 13	36,550,668	36,550,828	0	2	161	AAGGTGCTCTTTGCTGGCTCCCACTCTCAGCTGGTTCAGCTGTCTCTGGCCGACTGCACA AAGTACCGTTTCTGTGTAGACTGTGTCCTGGCCAGGGACCCTTACTGTGCCTGGAATGTC AACACCAGCCGCTGTGTGGCCACCACCAGTGGTCGCTCGGG
	INTRON 13 - 14	36,550,577	36,550,667			91	GTGAGTCAGTCGTCTCTGAGTGCCA..........TGATGCCACTTCTCTTCCCTACCAG
14	EXON 14	36,550,506	36,550,576	2	1	71	GTCCTTTCTGGTCCAACATGTGGCGAACTTGGACACTTCAAAGATGTGTAACCAGTATGG CATTAAAAAAG
	INTRON 14 - 15	36,550,369	36,550,505			137	GTGAGCTGTTTTCCTTTTGTTCCCT..........TTCTCTCTCATTTCTGCCTCTGCAG
15	EXON 15	36,548,642	36,550,368	1	-	1,727	TCAGATCTATTCCCAAGAACATCACCGTTGTGTCAGGCACAGACCTGGTCCTACCCTGCC ACCTCTCGTCCAATTTGGCCCATGCCCACTGGACCTTCGGAAGCCAGGACCTGCCTGCAG AACAACCTGGCTCCTTTCTTTATGACACGGGACTCCAGGCGCTGGTGGTGATGGCCGCAC AATCCCGTCACTCTGGACCCTATCGTTGCTATTCAGAGGAGCAGGGGACAAGACTGGCTG CAGAAAGCTACCTTGTTGCTGTCGTGGCCGGCTCGTCGGTGACACTGGAGGCACGGGCTC CCTTGGAAAACCTGGGGCTCGTGTGGCTCGCTGTGGTGGCCCTGGGGGCTGTGTGCCTGG TGCTGCTGCTGCTGGTCCTATCGCTCCGCCGGCGACTTCGAGAAGAGCTAGAAAAGGGTG CCAAGGCATCTGAGAGGACACTGGTGTACCCCTTGGAACTGCCCAAGGAGCCTGCCAGTC CCCCCTTCCGTCCTGGCCCCGAAACTGATGAAAAACTTTGGGATCCTGTCGGGTACTACT ATTCGGATGGCTCTCTCAAGATTGTGCCTGGTCACGCCCGGTGCCAGCCTGGGGGTGGGC CCCCTTCCCCACCTCCTGGCATACCTGGCCAGCCTCTGCCTTCTCCAACTCGGCTCCACC TAGGAGGTGGTCGGAACTCAAATGCCAATGGTTATGTGCGCTTACAGTTGGGCGGAGAGG ACCGAGGAGGATCTGGGCACCCACTGCCTGAGCTCGCGGATGAATTACGACGGAAACTAC AACAGCGCCAGCCGCTGCCTGACTCCAACCCAGAGGAGTCTTCAGTATGAGGGAACCCCC CCACCTCATTGGCGGGGGGGGGTCTCATGGGAGGTGCACTCTTAACTTTTGCACAGGCAC CAGCTACCTCAGGGACATGGCAGGGGCACTTGCTCTGCCTGGGACAGACACTGCCCAGCA TTTGCCCGGCCGTGAGGACCTGCTCAGCATGGGCACTGCCACTTGGTGTGGCTCACCCGG ACTTCAGCCTCACAGGAGACACACCCTCCTCTGTGAATTTGAGACATGTGGGACCCCAGC AGCCAAAACTTTGCAAGGAAGAGGTTTCAAGATGTGGGCGTGTTTGTGCATATATGTGTT GGTATGCATGTGGAAGAGTGTATGTGTGTGTGTGTGTGTGTTGTAACTTTCCTGTCTCTA TCACGTCTTCCCTTGGCCTGGGGTCCTCCTGGTTGAGTCTTTGGAGCTATGAAGGGGAAG GGGGTCATAGCACTTTGCTTCTCCTACCCCCAGCTGTCCCAAGCTTTGGGGCAGTGATGT ATATACGGGGAAGGGAAGGACAGGGTGTTGTACCCCTTTTGGGGGAGTGCGGGACTCGGG GGTGGGCCTAGCCCTGCTCCTAGGGCTGTGAATGTTTTCAGGGCGGGGGTTGGGGGTGGA GATGGAACCTCCTGCTTCAGGGGGAGGGGTGGGCAGGGCCTCCCACTTGCCCTCCGGGTT CGGTGGTATTTTATATTTGCGCTCTTCTGACAGGGCTGGGAAGGGTTGTTGGGGGAGGGA AGGGAGGAGGTGGGCATGCTATGGATACTGGCCTATCCTCTCCCTGCTCTGGGAAAAGGG CTAACAGTGTAACTTATTGTGTCCCCACATATTTATTTGTTGTAAATATTTGAGTATTTT TATATTGACAAATAAAATGGAGAAAATGAAATTTAACCCTGCCACAC
	3' upstream sequence						AGATATTTTGACTCAAACCCACTTATTGACCTAAGAGGGACTCATCCTTTGGTCTGGGCC ATCATGGTCTTAATGCCTGTCCGTGCATCTCTGGAGGGGCCAGCTGAGACTCAAGTGTTT TCCCACAGTGATGCCTATGGGACTGGGAGCCAGAGCAGGGCTACTCTGCTTGGGAGCTGG ACTTGGCCTGGTGCCACAGGGAAACAAGGCAGAGCGTTCGGGAAGAGGAGGAGAAGGAGA CGGTCTTCCCAGAACTCTAGGGAGGGTGAGCAGGGAGTCAGGGGCTGAAGGAGAGGCTTC TCAAGTTGTGTGGACAGTGTCTTTATAAAGATGGAGATTAGGACAAGCTCCGTGGGAGGG GAAGAATGCTAGTCTCGAATGTCCTATCTGGGTAGGGATAGTCCCCTATTGCCACCCAGT CAGTATCAAGCCCTTGTCTTAGTGAGGGAGTGGTGTAGGCCCAGATGTTCCTGGGAAAAA CAACAGGCCCAGCCTGGATTCATTTCTGAGCGCCCTTAATGAGAGCTGCCTGCCAATCGG ATTTTGAGAAGGAAAATAGGAAGAAGGAAAAAAAAAAGACATTTTAAGATTTTGTGTTGT GCTAAATTTGATGCTGTTGTTGGCTGCAATTTGGACACACCTGGTTTAGATCAATCTAAC CGGTACATAGGAACAGAGACCACAGTGAGCTCTCTACCCACCCTTAGCTGCCACCCCACC CCCCACCCCCCATACACTTGGATGACCCTTGAGCAGGCTGCTGTTTCCCTGAGTGTGGGT CAGAAGAGGCTGGGAAATACTTGAGTGTGTTTCCCTTAGCTCAGTTGTCTGCCCAGTGGG TGTTGGTAACCAGCGCCCACTGAGTGGGCAGAGGCTTAAGAACAAAGGTGGTCTACCAGG TCCTTGCCCTCAGGCCACCTGCTTCCTGATGGATTGCTAAAGAACGAGGGTCAGAGTGTT AGTAGCTTTCTGGCGGGTCACTGATCTGACCATGGATGGC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Sema4c (ENSMUSG00000026121)
Transcript ID	ENSMUST00000114991

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 835 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information