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Target CDS Information

Gene Symbol (Gene ID) Rab23 (ENSMUSG00000004768)
Cross Reference
CCDS CCDS35532.1
EMBL AC134435, AC163668, AK016493, ...show all
Fantom 4931430N23, B930015O13
GO GO:0000045, GO:0001843, GO:0003924, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0003924, ...show all
MGI_trans_name Rab23-003
OTTP OTTMUSP00000024510
OTTT OTTMUST00000051909
protein_id BAB30270.1, BAC32949.1, EDL14436.1
RefSeq_mRNA NM_001159729.1
RefSeq_peptide NP_001153201
UCSC uc011wix.1
UniParc UPI00000E883C
Uniprot/SPTREMBL Q9D4I9
Vega_transcript OTTMUST00000051909, Rab23-003
Vega_translation 178887, OTTMUSP00000024510
Definition protein_id:ENSMUSP00000110828
translation:
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ
NKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQKLKQQITED
PEQTHSSSNKIGVFNASVRSHLGQNSSSLNGGDVINLRPNKQRTKRTRNPFSSCSVP

Chromosome 1
Length
Position(start - end)
15,540
33,723,851 - 33,739,392
Orient to Chromosome plus
Link Location : (1:33723851-33739392)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rab23 (ENSMUSG00000004768)
Transcript ID ENSMUST00000115174
Reports
substitution
cSNPs6
Insertion21
Deletion27
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num1
synonymous substitutions 33734724 (p.Val88Val), 33734739 (p.Asp93Asp), 33734820 (p.Gln120Gln), 33734847 (p.Ser129Ser), 33734850 (p.Cys130Cys),
non-synonymous substitutions 33739273 (p.Arg199Gly),
B6 transcript
(ENSMUST00000115174)
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ
NKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQKLKQQITED
PEQTHSSSNKIGVFNASVRSHLGQNSSSLNGGDVINLRPNKQRTKRTRNPFSSCSVP*
MSMv4 transcript
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ
NKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQKLKQQITED
PEQTHSSSNKIGVFNASVGSHLGQNSSSLNGGDVINLRPNKQRTKRTRNPFSSCSVP*
homology99.58 (238 / 238)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rab23 (ENSMUSG00000004768)
Transcript ID ENSMUST00000115174
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTTATGTATTTTGAGACATAGTTTATTGTAGTTCAGGCTGGCCTTGAAAT
CCTGATCTTCATGCCACACCATCTTTCCAAGTACTAGGATCACACACGTGTGTTTCCACG
CCGCGTTTGAAGCGAGTTTGCTTTTTTGCAGGACCTTTTTAAATTTGTGGGTTAGTTCTC
TGAGTTGTTAGCCATCACGGTCTTCTATTTTGTTCAGTCATACCCTGCAAACAAATTATT
TGTCTTCATTCATCACTTTTTTTTTCACACTTCAGTGCTACCACGTGAGTCTCAGGTGGT
GACAGACTTCTGAGGCCCCCGGATACCTGACCCTGTGTAGGGAAACAAGGCGCACCTTCA
GTAGGTTAGCACATCCTGCTCACCTTGGTCTCCTTGGGTACCAAGGCCTGATGCTGTGCA
AACCCAGCCCGCGCCTTCCCTGCCAGCGCAGGGCGGGGCCGGTGCTGAGCATGCGCAGAC
CAGGTGGCGCATGCTCCTCAGCGCGGCGGGCGGGAGTCCGGCGCGCCCTCCATCCCCGGC
GGCGTCGGCAAGGAGTAGCTCGGTGAACCCGGATACTAATAAAGTTCGCTAGAGACTCAT
AATCGTTCTGAAAGAGCGGAGCGGGTACGAGGCGTCCGCGGGGAGGAGCCGGGCTCGGTG
CTGCGGGCTGTGCGTTCCGGGCTCGGTGTTGCGGGCTGTGCGTTCCGGGCTCAGCGCTGC
GGGTTGTGCGTTCCGGGCTGCGGGCTCCGCGCTGAGGGTTCCGGGCTGCGGGCAGAGGTG
AGTGCGGCCTGCGCGGCCTCGGCTCGGGGCTGCGGTGCCGCCGGGATGTCGCTGTGGGCG
CGGACGGCGGCTGCGGGCGGCGCTCTGCTCTCGCGTCCTCGTGGGGACCGCTCCGCGCCG
ACGACCCCGGCCGCGGCTCGCTCACCAACCGCCGTGGCTTCCCAGGAGCGGGAACCCGAG
AGTGGGAGAACTTGATGCGGGTGCGGCGCGGCGCGGGACGCACAGGGCTG
1 EXON 1 33,720,407 33,720,584 - - 178
CGCGACTCCGCCTGGGACGATCCCAGTGCCTTCTGTAACGGGCGGGTTGCTGTAGGGAAA
AACAAACCCGGCAAGCCTTTCTTTAGCAAGTTGACCCATCCTTTCCTTTATCTACGCGAG
AGTCTGCATTGGTTGCCAAGGGATTTGAAACCGAGAAGAGAGGACATTGATAATTACT
INTRON 1 - 2 33,720,585 33,721,607 1,023
GTCGGTTTTTAATTATATGTAGCAT..........TTTTGTTTTTGAACTTTAATTGTAG
2 EXON 2 33,721,608 33,721,699 - - 92
GGTGAAGAATTGTTTAGATTGAGAAGAGGACGTCGACTTCCCAAAACTGAGCCAGTGTGA
AACACAAGCTGGATGAACACGGTCAGATCTTG
INTRON 2 - 3 33,721,700 33,723,785 2,086
GTAAGGAGTGTAGGTTTGTATTGTT..........GAAACGATTCTGTTTTAAATTACAG
3 EXON 3 33,723,786 33,724,005 - 2 220
GTTTGAGGGAGACAGTGTGGTCTCCTGGAGTTAGAGCTGCTGCAGAAACTCTTCCTGTTT
CAAAAATGTTGGAGGAAGATATGGAAGTGGCCATCAAGATGGTGGTGGTGGGGAATGGGG
CGGTTGGAAAGTCGAGCATGATTCAGCGCTACTGCAAAGGCATTTTCACAAAAGACTACA
AGAAAACCATCGGCGTAGACTTTTTGGAGCGACAGATTCA
INTRON 3 - 4 33,724,006 33,724,933 928
GTACGTACCCAGCGCTTTATCCCTT..........GGAATAAACTCATCTCTTGTTTCAG
4 EXON 4 33,724,934 33,725,019 2 1 86
GGTTAACGATGAAGATGTAAGGCTAATGTTATGGGACACTGCAGGTCAAGAGGAGTTTGA
TGCAATCACGAAGGCCTACTATCGAG
INTRON 4 - 5 33,725,020 33,734,701 9,682
GTGAAATGTTTCTTCTGGCTAGATA..........ACAGTTTCCTTTTGTGATCTTGCAG
5 EXON 5 33,734,702 33,734,858 1 2 157
GAGCCCAGGCTTGTGTGCTTGTATTTTCTACCACAGATAGGGAATCTTTTGAAGCGATTT
CCAGCTGGAGAGAAAAAGTAGTAGCGGAGGTTGGAGATATACCAACCGCACTGGTGCAGA
ACAAGATCGATCTGCTGGATGATTCGTGTATCAAAAA
INTRON 5 - 6 33,734,859 33,736,799 1,941
GTAAGATGTCGCTCTTCTTGCCCGC..........TGCTTTGCTTTTGGTTGCTGTGCAG
6 EXON 6 33,736,800 33,736,882 2 1 83
TGAGGAAGCGGAGGGACTGGCCAAAAGGCTAAAGCTGAGGTTCTACCGGACGTCCGTGAA
GGAGGACCTCAACGTGAGTGAAG
INTRON 6 - 7 33,736,883 33,738,287 1,405
GCAAGTACTGCAGCCCAAGTCTTCG..........TACTGACTGTGTGTGTGTTTTCTAG
7 EXON 7 33,738,288 33,738,380 1 1 93
TTTTTAAATATTTGGCTGAGAAACACCTACAAAAACTCAAACAACAAATAACCGAAGATC
CAGAACAGACACACTCAAGTAGTAACAAGATTG
INTRON 7 - 8 33,738,381 33,739,252 872
GTAAGTGCGTGGTAAGAACCCAGCC..........ACTGTGCTTTCCCTCATTTACACAG
8 EXON 8 33,739,253 33,742,561 1 - 3,309
GTGTCTTTAATGCATCGGTCGGAAGTCACTTGGGCCAGAATTCAAGTTCCCTTAATGGTG
GCGATGTCATCAACCTTAGACCTAACAAACAAAGGACCAAGAGAACCAGAAACCCTTTCA
GCAGCTGTAGTGTACCCTAAACTGTTTCATGGAGGACAAAGCTGAATTGCACCGTGCAGT
TAACGGCACCGTGTGCGGGCTGTCCTGCGTGTGTCGTGGGCCTCTCACCACGCTCTGAAA
GCTGACATTGTAAGGCTGCTCTGCTGTGCTTCTCAGAATGTAGATGGCGCCCTCTGCTGG
AGAATTACTGCTCTGTGGACTCACTCTAGCTTTTTACCTTAGACGAGGCTTCTCCTGTTT
TTGAACGGACACCAGTGGAAATGTCAAAAACAGGTTTTGCTGAATTTTAAATTCTGAAAA
CAAAAACAACATGACTAACTACATCGGTAACCATTTTACCCTGATGGACCATGAGGGATG
GCGAGCATTGTTCTGACACTGGGCGTCGAGCTTTTCTGGAATGTTCGGTCTGAATGCTTA
AAGAACATATGGAAGGGAAACCCGGACTATGTCAGACTGCCCTGGTGTGTGTGTTGTCAG
AGGTACTCGTGCAATATCCGTGATGTGCGGACTATGGGGGTGTGCATGCAGACTCCTGGC
TCAGGCAGTAGGCCTGTGCCCTGGGAAAGGGAATGCAGATTCTAGTCAGTTCGCTCGCTC
GTACAACCATTGCGTATGTTTCTGGTCTCACCTGAGGCGTCCGGACATACTTTACAGAAC
GAACTTGGACCCAAGTGTGCCAAACACTACCGCTAATTTTTACACTACTTTCCTATTCAA
ATTTGTATTTATGACATCTTGTAGAGGCAGTTTCCTCTCCGACAGGTAGATGACAGGAAT
GTAAATGTCTGACTGCTCGGGCCTGTCCCTCCTGGGATTCTCCCAGAGCCTTCTCCATAG
CCACTGTAAGCAATGTGCCCGGTACACACAGCAGCCTGCAGCCACTCAGAAGGCCCTGTG
GAGCGCGTGCACACCAGCTTCTGGCTGCTGACCTGAGACCAAACTCTAAATTTCCAAGCT
GAAGGGGACCATCTTTGCAGAGTGATGGTCTTTGGTCCTGATCACAGATTTTCTGAAGCC
CTGCAACTCTAAGGCATCCTTTTGTTTACACTCGTAGTATAACATTTACCATTATTGCTT
AAGTTTTTCTGTGGCCTTTGGGGTACGTGGACCTTATCAGGAAGGATCGGTAAGAAGCGC
CTGTAAAGACCCGGTATGGGAAAGAAGGGGAAACGTGTGAGCTGGACACCAGTCTGCCTG
CCAAAGAGATAATATCATGAGTTCTACTAAAAACTCATTATCCTTAATCAGTCATTTTAT
TTAGAAAATATCAATAACCCGTTTCCACAGTCCTGGTTTTCATGTACTTCAAAATATATA
AAAGTGATATTTCTTGGAATGTGTGCTTTTCCTTTCTTTTTTTTTCTTTTTTTTACTAAA
ATATATAAATAGTTCCTATATTTCTCTTGTCTTTTTTTTCTTTAAAGTTTACCCTTGGCA
TACCACCCATCCTGCCCAGCACAGGTTCCTGTTGCGAGCAGAGGTCGCTGAGCGCCCTCC
CTCCATGGTGGTCCACATGCTTGCTTTTCCCATTGGCATCCCAAGCAGTCAGGATCATCT
GTGTTGTCAGCTGTTAGCGCCCCTGGTGCAGGGTAAGGTGGGGGACTTGGATCCACACAG
TGGTGCCTGCTGTGAGACGTAATTTTTTTCCTCTTCAAACACAGACTCCTCAGTTTTTAC
ACAAAGTAAATTTGTTGGCAAATAAATTAGTTGACCCTTTTAATGGCATTGGCAGAAAAT
TCATTCCTTATAGAACATTGTAGCTTTATTTGTAGCCACTAAATGCATGGTAAAAAGGTG
TGTGGTCTGTCTCTTTAAAACAGTGTCTGGTGATGGCTGCCGTTTCCTTAATATTTGTTA
GTTTGTCTCCCCGTCCCCCTCCCTCTCCCTCTCCTGGAGCTGAGGACTGAACCCAGGTAA
GTGCTCTACCACTGAGCTAAACCCCAGCCCCTTCCTTAATATTTGTAACAGAAGTTTATG
TGTTTTGTTTTATCCATTTTTTATGGGAGCATTTGTTACACATTTGGTTTTTACTTTGCA
CCACTGTATTTTCTACCTAACTTAAAAAGGTCTAAAATCAGCCACAGGTAATATTAATTT
ATCAATATATTCAATTCTGAAACCCTCAAAGGCCACATTATTGGTTTCTTCTGTGACTGT
AACGTTTATGAACTCTGGGCCACCAGACCTTTGTGCTCTAAGTAACTTTTGCAGTGTCAC
CGGTTCTTAGTGGCGGGCACAGAGCTGTGAAGTCATTGCCATATCTAAGAGTTCCTCAGG
TTTCTGCAGTCTCGGCCTAAGAAGGAGATAGTTTATAAAACAGCCCATATACATACAGCA
GTTCAAATAAAAGCAGGTTGAACTGTTTCTTCTCCACTCAAGGTGACCATACACATGGAG
ATTTCAAATTCCAGCACTACCACAGGGAGCGTGTGTGACCCCTCCGCTGCCGAGTGAAGT
GGGGCGGATGCTCCTGACTTGTCTTGGCAGAGCTGAGAACTCGGGTGTGGCCCTCCTGTC
TTTCTGAGGGTTTAGGATGGGGAGTTGGCCTTAGAACCCGATGCTGCCCCCTGAGGCGCT
CTTGTAATCTGAGATGCTGCTTGCCTCTGGAGGATCCTGGTGGCTGTGGTGAGTGCCCTG
GGAGCACCTCAGAGAGATGTGTGGGCTGCAGGGAGCCCACAAGGGCAGAGCTTTGGCTTC
CATAGCCTTAGGTGAGCAGATGGCTTTAGTCACACTAACAGTCACGTCGAACGTGCTGTT
GCTCCTAAGAGTTTCACGTATAAAGCTGAAAAATACATCATACAAATGAAGCTGTCTGCA
CACAGGTAAACAAAACCCCAGCAGGGTCTGAAATGCCCAGGTAGCCAGCGCCCAGATGGC
AGACTGATTCGGCCAAAAGAGTCTTGGTTACTGCCACTTTTCTGTTGTCACTTGAAGTAT
CTATAGTAGGATGTTGATAAATGGTATTTTAAAAATAAAATCTTTGGGTCAAAGGAAAAA
CTTAACCCCTTCTATATTTTTGTTACTAATAAATAATGCTTTTGTAAATCCGAATAGAAA
ACTACTTGTATGTTTTCCTATTGAGTGGTACTTAACGCCTTTGGGGTTAATTTTAAAATG
TACTACTTGATTAAAATTTCCACAAAGTTGAATTCCAATAACTCAAAAAAATAAAACATT
TCAAAGCTA
3' upstream sequence
GAATGAATTGTGTGTGGTGTGTGTGATGTGAGCCAGCAGAGTGGGGTGGGATGCTCAAAG
GAGCCAGGTGTGGGGCAGTGGGAGGCCATCCTTGGCTACAGAGTTCACCAGCATGAGAGC
TTTCATTCATAAATTAGCAGATGGGACTCCCTCAAACATCAGAATATCCTAGAAACAAGT
CCCACGGAGCTACTTTGAATATGAATACGCTCACCGTCTGGGCATCGGTTAGTGTCACCT
AGTAGAGCCCTGCTTTAGGTGGTTTTGCTACAAACGCTTACTTTCACGACTAGTTGTTAA
AAGAGTCATGTTTTTGTCTTGAGGCCTTGGGTCTCCCACACTACTATTCTACCTTCTGGT
GTAAACTAACATAGAGCTTAGTCGGTGTGTCAGACACCTGGCTCAGCCACCCTCTCCTTT
ACACCTCAAACCAGCATCACCTATGGGCAAGAGCTCAACCGCGCGCCCCCTGCTGGCCAA
AAGGTGCATTGGCTGCTCACACCGTCGTCTCTGCAGAACATTCTGCTCTGTGCAGCTCAT
CTCATTTCCTTGTAGGAGCAAACTAAGCTTAAACACACTCATGTCCCCGTTGCTACCGCC
TCCAAATCTGCAGCTGTTCCTACCTCATTTTGCATACTTGGGGACTTGTGTTGCTCAGCT
TTCCAAATAGCATCATATAGACTTGAGATGTATCAGCATTTTTCAGGATCAGTCATTTGA
AAATGATCAATCATGTGGACTAGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTT
CCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGG
GATCCAGTGCCCTCTTCTGGTGTGTCTGAAGAAGCCAAGTGTACTCATAAATTAAAATTT
TTTTTATTTTTTATTTTATTTTATTTTTTAAATCAATCGTGACTTTCAGGTCCCTCTGTG
CTTTCATTTCATCAAATATTCTGTTGCTGTAATAACGGTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Rab23 (ENSMUSG00000004768)
Transcript ID ENSMUST00000115174
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 238 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information