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Target CDS Information

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Cross Reference
EMBL AF459099, AF459100, AK015087, ...show all
Fantom 3830432A14, 4930404M18
GO GO:0003725, GO:0005730, GO:0005783, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Stau2-002
OTTP OTTMUSP00000044455
OTTT OTTMUST00000082850
PDB 1UHZ
protein_id AAH10300.1, AAH25118.1, AAN37928.1, ...show all
UCSC uc007ajr.2
UniParc UPI00000EAC2A
Uniprot/SWISSPROT Q8CJ67
Vega_transcript OTTMUST00000082850, Stau2-002
Vega_translation 178767, OTTMUSP00000044455
Definition protein_id:ENSMUSP00000111016
translation:
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKK
AQQAVANKALTESTLPKPVQKPPKSNVNNNPVGKLKETVLSPAHEVMIVGITHYSADNFF
LHWCL

Chromosome 1
Length
Position(start - end)
25,816
16,460,316 - 16,486,133
Orient to Chromosome minus
Link Location : (1:16460316-16486133)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000115359
Reports
substitution
cSNPs3
Insertion43
Deletion52
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num2
synonymous substitutions 16463087 (p.Thr74Thr),
non-synonymous substitutions 16460375 (p.Met107Val), 16460389 (p.Pro102Leu),
B6 transcript
(ENSMUST00000115359)
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKK
AQQAVANKALTESTLPKPVQKPPKSNVNNNPVGKLKETVLSPAHEVMIVGITHYSADNFF
LHWCL*
MSMv4 transcript
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKK
AQQAVANKALTESTLPKPVQKPPKSNVNNNPVGKLKETVLSLAHEVVIVGITHYSADNFF
LHWCL*
homology98.41 (126 / 126)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000115359
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CTAAAGATTTTTTTTTTTTTGGTACGGGCACACAACTTTAATATATTTAT
TATTCATTTTTTCCTGATGAATGATGTGGGCCGTAGAGCAGGTGATGGGGGCTCGCTTGC
GCTGCTTGCTACCCTCCTCCCCCTTCTTCCTCCTCCAGTCTAGAAAGGTGCAGGATCCGC
CGAATCCTACGTCGCACCGCAGTGGAACGGACGCGGGATGGTCGCGCGTCCCCAGCTAGG
CAGAGGCGGGCAGTCAGCGAGCCGGGAAAGGTAGGAGCAGAGCGTCGGGGACAGGCTGCT
AGAGAGCCCAGGGGCAGCGGGTGCGGGAGAGGCTGAGCCGCCGGTGCTGGAGCACCTTCG
CAGTTGCGGGCCGGGCGCCCTCAGCGTGCTCCTGCAGCAGCTCCCGGGACGGGCCCCGGC
GCGGCCCGAGACCCCAGGCCTAAGCCCCGCAGCGCCCCGGGATGCGGGGGTCCCAGAAGC
CGCCAGGGGGCGGGAACGGCGCGGCGAACAATGGCCGCTCGACCGCGAAGGGAGGCGGGG
AGAGGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAG
AGAGACAGAGAGAGACACAGAGACACAGAGACACAGAGACACAGAGAGAGAGACAGAGAC
ACAGAGAGAGAGACAGACAGACAGAGAGACACAGAGAGAGGAGAGAGAGAGACAGAGAAA
GAGAGGGGGGAGAGACACAGAGAGAGAGAGACAGACAGAGAGAGGAGAGAGACAGAGAAA
GAAAGGGGAGAGAGACAGAGAGACAGAGCGAGCTGGAGAGAGAGAGCGCGAGAGAGAGCT
GGCGCGGGGGCGCGCGGCGTGGCGCGGGCGCGGCGGCGCAGGCGGGGGCGCGCGGCGCGG
GCCCGGGAGGGCGCGGCGGGAGCGCAGGGCGGCAGGCGGAGGCGGGGGGC
1 EXON 1 16,519,173 16,519,260 - - 88
GGGAGCCGAGGAGGGAGCAGGCGGCGTCGGCGGAGCTCTGGAGCGCTCGCCCATGTGGAG
CCGTCTGCCGGGCGTCCGTGGCCCGCAG
INTRON 1 - 2 16,509,409 16,519,172 9,764
GTAAATCCTGGTGCGAGCGGCGCCG..........TTATTTCTTTGTTTTCATTTTCCAG
2 EXON 2 16,509,342 16,509,408 - - 67
TTTTGTGGAGCTGTGAGGGATACGGAAGTTTGATCAATATTGTCTTAACATGCTTCAGAT
AAATCAG
INTRON 2 - 3 16,486,151 16,509,341 23,191
GTGAGTATGATTAAGGCGTGTCTTA..........AACTTTACAGCCTTTTTATTTGCAG
3 EXON 3 16,486,020 16,486,150 - 0 131
CTTCTCTCCACGATAAAATGGCAAACCCCAAAGAGAAAACTCCAGTGTGTCTGGTAAATG
AGTTAGCCCGTTTCCATAGCATCCAACCCCAGTATAAGCTTCTGAATGAAAGCGGGCCTG
CTCATTCGAAG
INTRON 3 - 4 16,463,195 16,486,019 22,825
GTAAGGTTACAAAGAGAGGCGGTGA..........GTTTTCTCTATCTGGTCTTTCCAAG
4 EXON 4 16,463,035 16,463,194 0 1 160
ATGTTTTCGGTGCAGCTGAGTCTTGGCGAGCAGACATGGGAATCCGAAGGGAGCAGTATA
AAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTGACTGAATCTACCCTTCCCAAACCA
GTTCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAG
INTRON 4 - 5 16,460,420 16,463,034 2,615
GTATGGCATTGGTTTGTTTCCTTCC..........GGAGTTTTCCTTCTTTCTCTTCCAG
5 EXON 5 16,459,715 16,460,419 1 - 705
TGGGTAAGCTGAAGGAAACAGTTCTGAGTCTGGCTCATGAAGTTGTGATTGTTGGAATCA
CACATTACTCTGCTGATAACTTCTTTTTACATTGGTGTTTGTGAGATTCATCTGCATTGT
TTTTAAAGTGATACTGCATTGTGTTTACAATGATAATGGCTGTATAGCATTCCATTGCAT
GAATAGACAGTAATTTGGTAGTATTGAATTGTTTGCAGATTGGACACTTGGAAATAATAC
TGCTGTAAATATTCTTGTATATACACCTTTCTGTTGGGAGTGAACCTAGGATCATCAGTA
CTGCTGGGTAATAGGTTTCCATGTACTAAGAATTAACACACACGGCCAAGCTGCCACTGG
TGTACCCTAGTAGCAGTTAGGAGGGCTCTCTGTGGTCTTGTTCATCATTTGACTTTTTTA
GCTTTTCATGACAGCGGTGTTAATACTTCATTGTGGTTTTCATTTGCATTTCCCTATGGA
TGATGAAGCTGCTGGTGAAGTGTGATCGCTCGTCCATGGTGTCATTTGTCCACTGGTGTT
AGAATAGTCTCTTTAAAAAGGGATGGTTGGGAGTTACATTGTTTAAAAAAATATGTTTTC
TTTTTAATGACGGGGATTTTGTACATATTCTAGATTCACATAGTTTGTGAGATATGTATA
TTCCAGGATATTTTTCTGAAATATTACAGAATATCTTTCAAAAAT
3' upstream sequence
TTTTTGTTTGTTGTTTATTGAGACTAAGACTGTGTATTTCTAGCTGTCTTGTAATTTGCC
AAGTGCTACAGGCTGGCTTCAAACTCACAGAGATCTGCCTGCCTCTACCTTTAATGCTGG
TACTAAATGTGTGTGCTACCATCCCTGACTTCTTTTGAAAAAAAAAATTATTTCTTTTTT
TTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCTATACCCTC
CCCCGCCCTGCTCCCCAACCCACTCACTCCCACTTCTTGGCCCTGGCCTTCCCCTGTACT
GGGGCATATGAAGTTTGCTAGACCAAGGGGCCTCTCTTCCCAATGATGGCCAACTAGGCC
ATCTTTTGCTACATATGCAGCTAGAGACACGAGTTCTGGGGGTACTGATTAGTTCATATT
GTTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCTTTGGGTACTTTCTCTAGCTCCT
ACATTGGGGGCCCTGTGTTCCATCCTATAGATGACTGTGAGCATCCACTTCTGTATTTGC
CAGGCACTGGCAAAGCCTCACAGGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTG
CTGGCGTATGCAATAGTGTCTGTGTTTGGTGGCTGATTATGGGATGGACCCCTGGGTGGG
GCAGTCTCTGGATGGTCCCTCCTTTCATATTAGCTCCAAACTTTGTCTCTGAAACTCCAT
CCATGGATATTTTATTCCCTATTCTAGGGAGGAATGAAGTATCCCATACTTGCTTGGTCT
TGCTTCTTCTTGATTTTCTTGTGTTTTGCAAAATGTATCTTGGGTATTGTACTGGCTAGT
TTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCATTTGAGGAAAT
GCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAGTTAGTGATCAAGGGGGAAAGGCCC
CTTGTGGGTGGGACCATCTCAGGGCTGGTAGTCTTGGGTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000115359
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 126 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information