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Target CDS Information

Gene Symbol (Gene ID) Elovl2 (ENSMUSG00000021364)
Cross Reference
MGI_trans_name Elovl2-002
OTTP OTTMUSP00000038381
OTTT OTTMUST00000074003
RefSeq_mRNA NM_001311121.1
RefSeq_peptide NP_001298050.1
UCSC uc007qfb.2
UniParc UPI000016931B
Vega_transcript Elovl2-002, OTTMUST00000074003
Vega_translation 214384, OTTMUSP00000038381
Definition protein_id:ENSMUSP00000114112
translation:
MFGPRDSRVRGWFLLDSYLPTFILTITYLLSIWLGNKYMKNRPALSLRGILTLYNLAITL
LSAYMLVELILSSWEGGYNLQCQNLDSAGEGDVRVAKVLWWYYFSKLVEFLDTIFFVLRK
KTNQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSVFPSMHK
YLWWKKYLTQAQLVQFVLTITHTLSAVVKPCGFPFGCLIFQSSYMMTLVILFLNFYIQTY
RKKPVKKELQEKEVKNGFPKAHLIVANGMTDKKAQ

Chromosome 13
Length
Position(start - end)
11,855
41,185,294 - 41,197,150
Orient to Chromosome minus
Link Location : (13:41185294-41197150)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Elovl2 (ENSMUSG00000021364)
Transcript ID ENSMUST00000117096
Reports
substitution
cSNPs4
Insertion40
Deletion54
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num2
synonymous substitutions 41186868 (p.Leu233Leu), 41187441 (p.Thr189Thr),
non-synonymous substitutions 41186858 (p.Ile237Val), 41186877 (p.Ile230Met),
B6 transcript
(ENSMUST00000117096)
MFGPRDSRVRGWFLLDSYLPTFILTITYLLSIWLGNKYMKNRPALSLRGILTLYNLAITL
LSAYMLVELILSSWEGGYNLQCQNLDSAGEGDVRVAKVLWWYYFSKLVEFLDTIFFVLRK
KTNQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSVFPSMHK
YLWWKKYLTQAQLVQFVLTITHTLSAVVKPCGFPFGCLIFQSSYMMTLVILFLNFYIQTY
RKKPVKKELQEKEVKNGFPKAHLIVANGMTDKKAQ*
MSMv4 transcript
MFGPRDSRVRGWFLLDSYLPTFILTITYLLSIWLGNKYMKNRPALSLRGILTLYNLAITL
LSAYMLVELILSSWEGGYNLQCQNLDSAGEGDVRVAKVLWWYYFSKLVEFLDTIFFVLRK
KTNQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSVFPSMHK
YLWWKKYLTQAQLVQFVLTITHTLSAVVKPCGFPFGCLIFQSSYMMTLVMLFLNFYVQTY
RKKPVKKELQEKEVKNGFPKAHLIVANGMTDKKAQ*
homology99.28 (276 / 276)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Elovl2 (ENSMUSG00000021364)
Transcript ID ENSMUST00000117096
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CCTGGAATCTAGTTCTGTACACCATTAACGAAGCATTTGAATAAGCCATC
TGAGCCCCTGACAGCCCCTCTGGAAGCAAGCTCTGAAAAAGTCAGTTTAGACAGAGTATT
GGTGCTCATCTGCTCCCCGTGGCACCCAGAATGAATGGTTATCGTTTGCTTATTTGTTTG
CTTATTTGAAGCAGGGTCTCACGAAGCTCAGGTTGGTGCAGAACTCCCTAAGAAGCCAAG
GCTGATCTTGAACTCTTTCCTATTCCTCCTGGCCCTGCTCTTAAGTGCTGGGATTATACA
GGTGCACCAACCCAAGACCAGACCAGCCCTTGGTCATCCTCGCAAACCGGTGTGCCCAAT
TTAAATCATCCGGCGCGCTCGCCCAGCCACTCCCCAGGAGTAGCGGAGGAGCTGCTGGTG
GCTTCTCCAGGAGCCTGATGCTGTGATAGACGTGGGCGCCCAGACGCCTGCAAAAGGCGC
CAGCTGTGCTTGCAAATCCCAGCCCAGCCGGCAGGGGGCGCCGCGCCAGCGCCGGCGGGG
GCGCGCGCGGAGCGGGGACGCGCAGGCCTCTGGGGGGCCCACGGCCTCGCGGCCGGTGCC
GGGGCTCCTCCCACTCCGTGGTCCCCTCCGAGGGCCAGCGGCGCGGGGCGGAGGAAACGG
CCCGGAGCGGGCAGGGCGCGGCGCGCGCCCGAGGGGGCGGGGAGGCGGGCGGCGCGCGCC
CGAGGGGGCGGGGGCGAGTGACTAGCGCGGGCGGCGCGTGGCGCGGCGCAGAAGGAAGGC
GGCTACCCTGGACAGCGCATCGCGGCCGCGCGGCCATGGTGAGTGAGTGGGGGGCCGCGC
GCCTCGTCCCGGATGGCGGCGGACGTTGGGGCCGGGGCGTGCGGGCGTAGGGTCGGGGCG
CCGGCGGGTAACCGGGCGCGGGGGCGTGTCGGCGCTGCAGCCGGGGCCCAACGCTCTCCC
CCCCACGAGCCGCTCGCCGAGGGACCCCGCGAAACCCGGCGCCTGGGCAC
1 EXON 1 41,220,037 41,220,162 - - 126
AAAGGCGGAGACTGTGTGCTGCTGAGCTCGCAGGGAGCCAGCCGGTTCCTGGGCAGGCAG
CGATCCCAGCCCTGAGGGAACTGAGGCAGGAGGATTGCGGTGAGTTCGAGGCCAGCCTGG
GCCACG
INTRON 1 - 2 41,197,199 41,220,036 22,838
GTGAGACACCCTGTCTCAAAAGAGC..........CTGCTTAATTTTCCCTGTCTTTCAG
2 EXON 2 41,197,135 41,197,198 - 1 64
GAGCAGCTGAAGGCCTTTGATAATGAAGTCAATGCTTTCTTGGACAACATGTTTGGACCA
CGAG
INTRON 2 - 3 41,194,835 41,197,134 2,300
GTGAGTAAGCCGCTTGGAAACATGC..........CCTCACCGTAAGCATTTCTTTACAG
3 EXON 3 41,194,647 41,194,834 1 0 188
ATTCTCGAGTTCGCGGGTGGTTCCTGCTGGACTCTTACCTTCCCACCTTCATCCTCACCA
TCACGTACCTGCTCTCGATATGGCTGGGTAACAAGTACATGAAGAACAGGCCTGCTCTGT
CTCTCAGGGGCATCCTCACCTTGTATAACCTCGCAATCACACTTCTTTCTGCGTATATGC
TGGTGGAG
INTRON 3 - 4 41,191,966 41,194,646 2,681
GTAAGTGGCTGTGGCCTGCACTCTG..........TTTCCCTTTCTTGGTGCTCTGGCAG
4 EXON 4 41,191,888 41,191,965 0 0 78
CTCATCCTCTCCAGCTGGGAAGGAGGTTACAACTTGCAGTGTCAGAATCTCGACAGTGCA
GGAGAAGGTGATGTCCGG
INTRON 4 - 5 41,190,118 41,191,887 1,770
GTGAGTCCTGAGACTGTTGCCATTG..........TTCCCCCTCCTTGAACTTGTTACAG
5 EXON 5 41,189,946 41,190,117 0 1 172
GTAGCCAAGGTCTTGTGGTGGTACTACTTCTCCAAACTAGTGGAGTTCCTGGACACGATT
TTCTTTGTTCTACGAAAAAAGACCAATCAGATCACCTTCCTTCATGTCTATCACCACGCG
TCCATGTTCAACATCTGGTGGTGTGTTTTGAACTGGATACCTTGTGGTCAAA
INTRON 5 - 6 41,187,554 41,189,945 2,392
GTAAGTCATTGTGGTAACTCTTGCT..........TAACTTGCATGCTCCACTGTCACAG
6 EXON 6 41,187,429 41,187,553 1 0 125
GCTTCTTTGGACCCACCCTGAACAGCTTTATCCACATTCTCATGTACTCCTACTACGGCC
TGTCTGTGTTCCCGTCCATGCACAAGTACCTTTGGTGGAAGAAGTACCTCACGCAGGCTC
AGCTG
INTRON 6 - 7 41,186,988 41,187,428 441
GTAAGTTCTCCTTTCTTTGCTTTTC..........CACCCGCAGCCTCTCTGCCTTCCAG
7 EXON 7 41,186,853 41,186,987 0 0 135
GTGCAGTTCGTACTCACCATCACGCACACGCTGAGTGCCGTGGTGAAGCCCTGTGGCTTC
CCCTTTGGCTGTCTCATCTTCCAGTCTTCCTATATGATGACGCTGGTCATGCTGTTCTTG
AACTTCTATGTTCAG
INTRON 7 - 8 41,185,408 41,186,852 1,445
GTAAGTAAGGTGTGAGTGTTCAGGG..........TCTTCTCCTGTCTACACTCTGACAG
8 EXON 8 41,182,499 41,185,407 0 - 2,909
ACATACCGGAAAAAGCCAGTGAAGAAAGAGCTGCAAGAGAAAGAAGTGAAGAATGGTTTC
CCCAAAGCCCACTTAATTGTGGCTAATGGCATGACGGACAAGAAGGCTCAATAAAATGAA
GTGCCGGGGAACACAAACTGAGGTGGTGGCGGCGGCGGCGGCGGCAGCAAACAGATGAGC
TTGTTTTAAAGCAGAGACTGAATAGAAAGTTGTATGTTTTAGCATAAACTAATTCCTTTT
GAGTTTGTAAATCATTTGTACCCAGAATGTATTATAATATATTGCTATTAGGTTACTCTA
CTAACTGGAGCCATGCCGACCTCTACAAACCTTGAACAGGTGCACAGCCCCCTCTCCGGA
GCGCTTTGTAATGCCTTATTCACGTCGAAAACCAGGAGACTCGGGCTTCGTTTCTTCATG
GCAAGTCTTCAGAGTTAATTTTCTTTAGATGTGTAAAACTGTTCATTGTAGTGTAAATGT
CAGGGTCTGTTCTAGTCTATGTCAAGCAATAACTGTCAGTGCATAAATCGATTAGTCTGC
TGTTGCTTAAGGCAGCAGCCCCAGGCAGCATTTAAGCGGGATCCTTAGCAAGACAGAATA
CAGCAAAACCCTTTCCCCTCTCAAGCCAGGAGTCTCATCTGCTACATTTTTTTTAACCAC
CTCTGATTTCCAACTTAGTGATGTGGTAATGAAATTCGTTTGTCTTCAATATAGTTTGAA
GATTAGTCATTCCATGAAGGAACAGCCTCTTGAGCTGGGTATGGTGGCACCCATCTGTGA
GTCCAGCATTTGGGTATTGAGACAGCCTAGGGTACACAGGCACAAGACCCTGTCTCAACC
AGAAAAGAAAAATGTGTTTGCCAAATCATAACTCAGGGGCTTTGAACAGAGCTGTCTCTG
TTTCAATTGGCATCCTTGCTCATCCATTCCTGTCTACCTCCCTTGTTAGTCTAGATTTCT
GGAGTTATGTTCCCCACATCCAAAGCCAGTGTCTACATACAGCTGCCATGCCCTTTCTGA
ACAAAGGCTGGAGTTGTCCAATTGCAGTTCTTCTTCGCATAGAAATGCAATTGGAATATT
TACAAATCATAATCAACAGAGCCCCAGGGGCAAAATAGACATTCTATTTGTCAGCTGTTG
CTGCTGAGCCTGCTGGTGAACACCATTGCAAGCAGTTGCTGAGCCTGCTGGTGAACACCA
TTGCAAGCCATTGCTGAGCCTGCTGGTGAACACCATTGCAAGCCATTGCTGTCAAGCTTC
ATGAGTTAAATTTAACTGTTAGAGAGGAGAAAAGTATAGCAGTCGTTTGGAACGATCTCG
TGGGGTGGGACTAAGCCATAATGATGTGTCTGGCCCAAGCAGCAATGCTGTCCCTGCTCA
GAACTGTGGTCTCTGTGGAGAACCTAGTACAGAGCCTGAGCAAGGCAATGGACCACCTCC
TTTTCCTCAAACTGATGGATCACCACTGTTAAACTATACCAGGTGTGAAAAAGGGCATTT
TCCAAAACATACACAAAACACAACTTACTCTATTTCCCCTCCATTTCAGCAAATGTGTTC
TTGGTTCATGGCACTGGCACCCAGCGCATGGGCACCAGGTAGGTGTTCCTCGAGTGCCAA
CGGCGGGGCCTGCCCACCCCTGTCTTCCTTTCTGGGCAAGCTCCCATTTTAACTTTTCCC
TGTTAAAAATTGTACTGATGTTTTAAACTCGTAACTATACCACCCTTCTCACTGGTGTAT
TTTGAAAACCACCACAGTCCGATGTCCTGTGCCATGTCTGTCATTCCTGTTGAACAGACT
CTTCCTGTCTGGTGACCACCTATGCTTCAGTGCATTTTCTAAACAATTTCTCAAACTGAT
CTGCTCCCGGGTGCTTTCTTACCACCATCTCTGGTGACTTAGCCTCAAATTGGTGTTTTT
CTTTCCCAAGAATTCATCTTAAGGGTTAGCTTTGAGTATGTTACTGTCCTTCTATGACAA
GACCAAAGGAACAAACTCCTTGGTGAATCTGGAGTTCAGCTTTAGTTTTCAAACACAATC
TGAAATCTGTTAGTAAAATGAATTCTGGGTAAAAATGAGACTCAAGAGGCATCACTGGCC
ATTGTACCAGATTATTCCTGCTCGCCAGTGAGAGGCGTTTAAGTCGCGCTGTGCATCGTA
CCTTCAGTTTAGGCTGTTTTCATGACCTCACATCTGTGTAGCACAAAGGGTGTTATCTTC
CTATAGCAGATCAACAGTGGCAGCTCACAGTACCAGCCAGCTTTAGACCTCCCAGTGCAA
AGCCCAGCGCAGCACTAAGCCTTAAGCCACCCAAGGGCTGACACACCATGCAGAGCTACG
AAATCTGTGCTGAGAAAATGCCATCTGGAAAGATTTTTAACCCATTCATTCTTAGTGTGA
ATTTTCTAAAATAGCAGTATAAAAAAAAAGTCTCTATAATCTGATAGAAAACCGTCTTTT
CCCAAGTGAATTCCCTTTTATTCATGAGAACAAAAGTACTTAGATACTATAAAACCTTAA
TTTCCCCAACTTTTAAAATAAAATGGAATATTTGCTGAATGAATTAAGCATAGAAAATGT
CAACCCATCAGAATTATATTTATACATATTGGTGGATAAGTTCTTGTCTTCCCACATCAG
AGAATTTTTTTTTAAACCAAAATGGGCAGAATAGCATTTTGTATGTTAGAGACCATTCTT
TTCTAGTCCTTCCAAACATTCCTGTGTCACTTAAGAATGTTAGTAGAGGTCGCTTCTTTG
GAAATTGAGGACTTTTTTTTTTCCTTTGAAAGTATGGCATCTGAAGAACACAGTATCATG
ACTCGGGTGGAAAGGGAGGCAGAAGCCATTTTTCTTTTAGATGAAAAGCATTCTGTGTGA
TTGTTGTATAATAAATTGATTTTTACACT
3' upstream sequence
AAAACATCTTGCAACTTTTCTTATTTGGTTTAAAGAAACTAAAATGTGGGCCTGTGCAAT
ATTCCAAGTGGCCTATTATTCAGAGATTATTTACCAATAAAGTGATATATTAGTGATTAA
TCTTAGATTCTTAATTCATTTCAACAAGCAGTGGGATGTTAAAGTAACATTATTAATGCA
ATACTTATATACCCAGTTAAACTATCTCAGAAGGAAAAATTAATAGCAATCAGATAAGCA
GAGGCTACAACTATTAGAAACTACTTACTATAAAGAATAAAAATATATCATGATGCACTA
TATATATTATAGTACAGTAACTATACCATAGCACACTACACTATGCAATGGGAGCACAAG
TGACATTGGTTACCAATACTCTGGGCACCTGCAGTGTCAGCGGCGATTTCTTCTCAGGAG
CTGAAGCAGGGCCACAGTCTGCTGTTTGTCAGCACAGAGGCTACACTGATCCACCACAAT
GAAGACCCCAAGGCTGGAAGTAGCCTCAATAGTTATGCTCAAAATCTGACCTAAAATTGC
TTCCATCCCAAGGTAGAAATGGTAAGGGCAAGGGAGTTAGGAAGGCAGGGTCAGGGAAGG
GCAGAAGGAACTTGGAATGAGTGGGGACTAGAGTTTAGGGAGAGGGTGAACATTTTGAAG
AGCCTTTTTTCACTTCATGATTTTTAAGATGTGGTTGGGATAAATCTCATTCAAACTTTG
TTTTTAAAACTAAAAGGCAAGGAGGGGTGACCCATCCCTGCAATCCCAGCACAAAGAAAG
CTGAGGCAGGAAGATGTCTCCGAGTTAAAGCCACTTTAGGATACAGGAGGTTGGTTCCTA
GAAAATTTGGCTGTCTCCAAAAATACATAATATACCCTATGTTTCTGTGATAAGTTAGCT
ACTGCAAATTGAAGTGTTTTGTAATAAACATCTAACGTCTCTTTAACACTCCATTTGAAG
AGAAGCTTCAGCATATATTTTTATTGTTGAAGGCCTTCTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Elovl2 (ENSMUSG00000021364)
Transcript ID ENSMUST00000117096
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 276 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information