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Target CDS Information

Gene Symbol (Gene ID) Ube2w (ENSMUSG00000025939)
Cross Reference
CCDS CCDS48224.2
EMBL AC157362, AC162448, CH466536
GO GO:0000209, GO:0004842, GO:0005737, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Ube2w-001
OTTP OTTMUSP00000038156
OTTT OTTMUST00000073645
protein_id EDL14346.1
RefSeq_mRNA NM_001271017.1, NM_025773.3
RefSeq_peptide NP_001257946.1, NP_080049
UCSC uc007ajt.2
UniParc UPI0000D6597A
Uniprot/SPTREMBL A0A0A0MQF3
Vega_transcript OTTMUST00000073645, Ube2w-001
Vega_translation 178777, OTTMUSP00000038156
Definition protein_id:ENSMUSP00000112741
translation:
MLGPRGVTRARRLRPLRLGPRWPWGDGFIMASMQKRLQKELLALQNDPPPGMTLNEKSVQ
NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHIC
LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC

Chromosome 1
Length
Position(start - end)
48,068
16,571,269 - 16,619,338
Orient to Chromosome minus
Link Location : (1:16571269-16619338)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ube2w (ENSMUSG00000025939)
Transcript ID ENSMUST00000117146
Reports
substitution
cSNPs0
Insertion32
Deletion40
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000117146)
MLGPRGVTRARRLRPLRLGPRWPWGDGFIMASMQKRLQKELLALQNDPPPGMTLNEKSVQ
NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHIC
LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
*
MSMv4 transcript
MLGPRGVTRARRLRPLRLGPRWPWGDGFIMASMQKRLQKELLALQNDPPPGMTLNEKSVQ
NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHIC
LSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTKWWYHDDTC
*
homology100.00 (181 / 181)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ube2w (ENSMUSG00000025939)
Transcript ID ENSMUST00000117146
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TAGACATCTTTTCCTCTCTTGAACACATTTCCTTACGGATGTTCTCAGAG
GAACATCGTGCTCTAGCTTAAGTGTGAGAGTGATAACCTACATCACCATTATATTTATAT
CTTAGAGAAATGTCTAAAAATGAAGCCAAGTCAATAAAAATAAAGATTTAAACTTTCATC
CGGGTAAAGTAAAAGCCTTCTACTCAACATGCCATCCTCTCTGATTCCTTTAGAGACAGG
ACATGAGGTGCAAGCTTTTGGCTTCCATTTTTCGTTTGGTATTTAAGTAAACGACATCTT
TGGTTCCGGAGGAGCTTTAAAAATGTGACTTCTGATAAATGCTGGCAGAACTGGTGCATT
CCTAGAATAAATTCTGTATGCTCAGCGATTCCTACTCAAGCTCACTCATAGGTCGTCTGA
TCATGCAACTGCCCACCACAGAATAGGGTGAAGAGAAATCTAGGCATGGCAGAAGGTTTA
AGTATTAAGTATTAAGTATTAAATTACGTGAACTATATTCATTATATTGAGATTTCACGG
CTAGAGTCAAATTGTTAATCAAAAGTAAGACTGATGTAACAACGACTCTTATGGTATACC
TGGACTTTACAATTTAGAGGGTTAGGGAACTAGAAAATTGCACACAAAAGGGAACTCCAT
TATTCACCCTCCTTCCCTTTCCAGCACGTTTCAAATCCAATTGTTCTTGCTTTTAAGATC
ACTGCTCTCAGTTTTCATTCTGTCCTATAGGGAAACCTGTGACTCTCTGCCCCTCAAAGT
AGAAGCTTCCTAGGTCTGCAAATACCAGAAAGCATCTCCAGGCGAAGTTGTATCTGCCTC
AGGAGCGAAAACACGGTAGGTGTAAAAAAGACATACGAAGGGGGTGGGCTGTAAATCTTA
CACTTGTAGCTGGAAAAACAAAATGAGATCCCCTCCCTGCCAAATGCCCGGACAGCATTG
TGACCTCGGCATAACGCTTCAGTCCGACCTGGAGCAGCGCCTCCGCCAGC
1 EXON 1 16,619,237 16,619,489 - 0 253
ACTGAGGGTGGGCCCGCGTATAAATTGGCTGGGATGCAAGGTACCTAGGGAGCCCGGCCT
GGCCCCGCCCCGCCCCGCCCCGGGCACCCGCGCGTTAGCCAATCGGACACGCGGGCCCCT
TCCCATCGGCGACTCCACCCCCGTGCCCGGGATGTTGGGCCCCCGCGGCGTGACGCGAGC
ACGGCGGCTCCGCCCCCTGCGTCTCGGGCCTCGCTGGCCTTGGGGGGATGGTTTCATCAT
GGCGTCAATGCAG
INTRON 1 - 2 16,602,354 16,619,236 16,883
GTGAGCGGAGCTGCTGCAGCGGGGA..........ATAAATTACTATTGATATTTTCTAG
2 EXON 2 16,602,262 16,602,353 0 2 92
AAACGACTACAAAAAGAACTGTTGGCTTTGCAGAATGACCCACCTCCTGGAATGACTTTA
AATGAAAAGAGTGTTCAGAATTCAATCACGCA
INTRON 2 - 3 16,598,054 16,602,261 4,208
GTGAGTATTTGATTCTCAAAGGTAT..........TCCTTTTTTCTTTTTCCTGCCTTAG
3 EXON 3 16,597,951 16,598,053 2 0 103
GTGGATCGTAGACATGGAAGGTGCACCAGGAACCTTATATGAAGGGGAAAAATTTCAACT
TTTGTTTAAATTTAGTAGTCGATACCCTTTTGACTCTCCTCAG
INTRON 3 - 4 16,585,432 16,597,950 12,519
GTAACCTTGCATGTACCATTGTGTT..........TAATGGAATTTCATTTTTTTCTTAG
4 EXON 4 16,585,276 16,585,431 0 0 156
GTCATGTTTACTGGTGAAAATATTCCCATTCATCCTCATGTGTATAGCAATGGTCATATC
TGTTTATCCATTCTAACAGAAGACTGGTCCCCGGCGCTCTCAGTGCAGTCAGTCTGTCTC
AGCATTATCAGCATGCTTTCCAGCTGCAAAGAAAAG
INTRON 4 - 5 16,582,003 16,585,275 3,273
GTAGGACTTGCAACAGTCACTCCAG..........TGTTGTTGTTTTGTTTTTGCTTCAG
5 EXON 5 16,581,927 16,582,002 0 1 76
AGACGACCACCAGATAATTCCTTTTATGTGCGAACATGTAACAAGAATCCAAAGAAAACA
AAATGGTGGTATCATG
INTRON 5 - 6 16,571,283 16,581,926 10,644
GTGAGCAGTTTTAATTTCTAGTGAC..........TTCTCTTTTTCTCCTTTCCTTAAAG
6 EXON 6 16,569,782 16,571,282 1 - 1,501
ATGACACTTGTTGATGCCGCTGCCCTCCTCCTGTAGCAGAAGATAGTCCTACTGAGAAAT
GAGCACTTTGATCATTCAGTCTTTGAACTTTAACCTTTGACTGGAAGTGACCTATAGGCA
ATGAAGACTACTTCCTTTTACTGCATTTTTACTCGTGTGCATTCTGGGCGCATGTTGATC
GCTGGTTCAGTCCAGTCAACCGACATGCTTTTATTAGTCATACAGTATTAATGCAGGTGT
CAGGAAATGTCAACTATAATTCCATTTTTTATTTTTATTTTTTTAAGCTTTTGGGAAAGT
TCCAGGTCCTCGTGTAGTGTGCAATAACAGTGACTTCCTCAGTGGTTTGGGGACGTTCAT
TGCCGGCAATGGACGTTGTAAAAGGAAGAGTTTTCTTAACTCCTGCCACTTGGTGATTAA
TGCATGATAGGGCCTATGAAATGAATTTATCAGTTGTTGTGGGATTATAAGGAAAGTGAG
GGATCCAACATTACATTGAAAGCCACCCCAATTGTTTATATTTGGATTCTATGCACTGTG
ATCCTAAGGCCAACAGCATGAAATTACATGCATCTTTAAAGGACCGTAAGAAAGATCATT
GCATATTTATTTAATTGTTTATATCTGCTGTCAAATTGTTTTGACATGGAAAGTTTTCGA
GGAACATTGGCAGAGAGGTACAATATGTTATCCCTATGGTGAAAATAAATTCATTTGTTG
TATATACTCCTCAGTCTCTGAAGTGAAGGTGTGAATAATAGAGTGTGGATGGTTAACCAA
GGTGTTGTTTGGAAGTAAAAGAAAAAATGGCAGTAATGATTAAATTACTGCCATCCATCA
TTTGGGCCTGTTATTATTTTTCCAAGTATATTATACTCTGTTACTTCCTGCTAGCCATCA
GCATGAGCCCTATTGCCTAAACACTATTTCATTTATTTATGTTTGGAAAAAATCCATAAA
CATTTTTGTTTGTAATCTTGTTTCTTTTGTTATGTTTTCAGTTGTTTAAATGTTATAATA
CTTTAATTGAAAGAATTTTGTCAAGTTTTTTTTTCTTGTAAATTTTCTTTACTTGTATCA
TCTTGTCCTTCAATACTGTACCCTAAAATGAGAAATACATTTTTGACAGAGGCTTAATGT
TTTAACAAAAGAGTGTGGACATTTTTATTTTAAGATTTTGGTAAAAGGATACTATAAAAA
CAATGTTTGCTTATTTGTCTCACTTACCCATTGTGTAGGGTTTCTTGGAAGAACTTGTTT
TGTTTGTTGAGAAGATTTTGCCTACAGTTAGATGAAGTTTTTCTGTCTGCCTGTCTGTCT
GTCTCTACTCTTATCTATCTGTATGTATGTAGGTATCTATCTATCATCTCTCTCTCTGAT
CTATAAAACAATTGTTGAGAAGGTTCCATCCTAAATACCATGTACCATGTAATGATTATA
TAACTAGGTCTTTTTAAGAAGTGATTAATGTATTTTATAAATTACCTTTTCACATATGCA
A
3' upstream sequence
GCTCTGTTTCTATGACAATGTTATTTTTACTGATGCCTTACTGTTATAGTCTTTTTGAAT
ATCCTGCAGTGAATATATTAATCAATTTGGGCTAAAAATAAAAGCCAGTTGGCTGAAAGG
TCTGACGGTATGTAAACCCATAAAAAAATCATTCAACTGATAATTGGTAAAGAATATTTT
AAAAATTGTTTTTAACCTCTGTGTAGATGACATTTTGTAGCTTTTTACATGTTGTTAATT
AAGGGCATATAATTTTACACTCTAAAAGTATAACTGCTGAACTCAGGGGTGGGTAGACTT
CAAAAATATGTCTACTGTAGAAATAACTTGAAAAAAATTAAATCCATGGCCAGCCACCAA
ATTGTGGACACTGTTTATAAAACTAGGGAGCAATCATCATTTTTTAAAGATTATAAACGT
TTTCTTCTGTCTTGACTGCATGTATATAAGTTCCCACAGTAACCATTATCACTTTTATTA
GTTGGCCTTCTTGACATGAAAAAAATCTTTACGTTCTTACGTTTCTTCTGCTTTTACGAT
GAAATTACAGCTGTAAGTTAAGTTTATGTCACTGCTCTAAATATTAATTAGCTCTTTTGT
CGGGTTGGGGACACAGGGAGAAACACTTACCTATCCGTGGTCCTCTTACTAAAATCCTGG
CCTGTGACGTCACTCACCGAAGGAGCTCCCACACCAGGTCAGCAGCAACAGTGCTGGAAT
GTAGATTACTAGCTTCCGTTGTGTTTTTATAACAGTGCTTTACTATACCTCTCTCTATGC
AGACACTGTAGGGCAGACGCAAATGAAATGGGAAATAGGGAAAAACCAAACACTTTTGCT
TTATTTTTGGTTCCAAGTGAAGAAATTAAAAATATATCTAAAATAGAGGAGCATCAACTA
TTACTAATTCATAATTAGATTAATATTACTCCTTTGAATTTAGAAGCCACTGAAAATTCT
TTTACATTTGCATTTAATTATTTGTCATTATTAAGAGTCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Ube2w (ENSMUSG00000025939)
Transcript ID ENSMUST00000117146
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 181 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information