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Target CDS Information

Gene Symbol (Gene ID) Psmd4 (ENSMUSG00000005625)
Cross Reference
EMBL AB029090, AB029142, AB029143, ...show all
GO GO:0000502, GO:0005654, GO:0005737, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Psmd4-004
OTTP OTTMUSP00000041833
OTTT OTTMUST00000047021
protein_id AAC53547.1, AAG09199.1, AAH09005.1, ...show all
Reactome R-MMU-109581, R-MMU-112399, R-MMU-112412, ...show all
UCSC uc008qht.2
UniParc UPI000002B1B6
Uniprot/SWISSPROT O35226
Vega_transcript OTTMUST00000047021, Psmd4-004
Vega_translation 188031, OTTMUSP00000041833
Definition protein_id:ENSMUSP00000113554
translation:
MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
ASAAEAGIATPGTEGERDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQG
TEFSQESADMDASSAMDTSDPVKVRASSEALTQPSLTSPAFRSLSFWDQGLSSLAFHKKG
LGATEGNT

Chromosome 3
Length
Position(start - end)
9,188
95,033,344 - 95,042,533
Orient to Chromosome minus
Link Location : (3:95033344-95042533)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Psmd4 (ENSMUSG00000005625)
Transcript ID ENSMUST00000117355
Reports
substitution
cSNPs2
Insertion12
Deletion7
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num2
synonymous substitutions
non-synonymous substitutions 95033390 (p.Leu354Gln), 95033405 (p.Gln349Arg),
B6 transcript
(ENSMUST00000117355)
MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
ASAAEAGIATPGTEGERDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQG
TEFSQESADMDASSAMDTSDPVKVRASSEALTQPSLTSPAFRSLSFWDQGLSSLAFHKKG
LGATEGNT*
MSMv4 transcript
MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
ASAAEAGIATPGTEGERDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQG
TEFSQESADMDASSAMDTSDPVKVRASSEALTQPSLTSPAFRSLSFWDRGLSSQAFHKKG
LGATEGNT*
homology99.46 (369 / 369)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Psmd4 (ENSMUSG00000005625)
Transcript ID ENSMUST00000117355
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CGTTCCTTGGGTGATTACATGGTGTTTACTGCGGGCTGGGGAAATGACTC
AGTGCTTATGAGAGAGCGCTTACTGCTCTTCCTAGAGGACCAGAGTTCGGTTCCCAGAAC
TCAAGACAGGCAGCTCACAGCTGCCTGGAACTCCAGTTCCGGATTTGATATTCTCTTCCA
GCCTCTGCAGGGCCTGAATACACACACAAACGCTTAAAAATTTTTTTTGGTTTGTTTTTT
TTTTTTTAATTGGTCAAAACTTTTCTGGATTCCTTCATCCTGTCAGACTCAATACTGGAG
TTAGGAATTGCATAGATTTTTTTTTTTTTTTTTTTTGGTAGGCAGTAGATAGGTAAATCG
AATTTGAGGATACAAGTGTTTGTAGCAGTTGCATAAACACAGTGCAATGGGAAACAGGAA
GTTAAAATGTGGTTAACGATGCTGACACACTTTTTAAGTGATTATGCTTGGACTGACATA
TCCACAGTAGTGTATGCACACATGAGTGTCTGTTATGTGTTCGAGGCAGTCTCACTACGT
AGTAGCTATGTTGCCCACGTTGGCCTGGAAATTGCAGTTCAGATCTTAGCATGAGTGTGC
CCCTTGTAAACAGCACTGGGAGGTGAAGCAATAGAGTTTATTAGCCTGAGCTCCACAGCG
AATTGCTGTCATCCTTTTTCAAACCGTAACAACAAAAACAAATCAAAAACCCAAATATAC
AAAAGAAAGAGAGCAGAAGAGGGGGTAAATTACAGCTCTCCTGCCTCACACTGGAGTGTT
GCTGCCAGGCGAGTGCAGAGAGCTTACAGCTGTTCCGGAAGCTGCTGCGAAGGTAGCCAA
CTCTATTGGATAACCTATCTTTCCATTTCTGTGGCGCCTACAAGTCCCAGAACACACCGC
GGGGCGCGGAGGCGGGGCAGCATGAAGACTGAGTTCTTTGATTGGTGATGAGCACCAGGC
CAATCGGAGGTGCTGTTGTTTGTGAGTCCCGGAGCCGGTCCACAGAGGGA
1 EXON 1 95,042,508 95,042,543 - 2 36
AGGAGGCAAGATGGTGTTGGAGAGCACTATGGTTTG
INTRON 1 - 2 95,036,746 95,042,507 5,762
GTGAGGAGCTTCGGACGTGGCTGGG..........GTGCCCTTTTCTCCTTATCTGACAG
2 EXON 2 95,036,605 95,036,745 2 2 141
TGTGGACAACAGTGAGTACATGCGGAACGGAGACTTCCTTCCCACCCGGCTGCAGGCCCA
GCAGGATGCCGTCAACATTGTATGTCACTCAAAGACCCGAAGCAACCCTGAGAATAACGT
GGGCCTGATCACACTGGCCAA
INTRON 2 - 3 95,035,925 95,036,604 680
GTACGTGGGACACAGTGGGGCTGTG..........ACTAAAATTCTTTGCTCACATTTAG
3 EXON 3 95,035,810 95,035,924 2 0 115
TGACTGTGAGGTGCTGACCACACTCACCCCGGACACTGGCCGTATCCTCTCCAAGCTCCA
CACTGTCCAACCCAAAGGCAAGATCACCTTCTGCACTGGCATCCGCGTGGCCCAC
INTRON 3 - 4 95,035,325 95,035,809 485
GTGAGTCCTGTTGGCTCCCTGCTAT..........ACGGGAACTTCTTTTCCCTTCCAAG
4 EXON 4 95,035,238 95,035,324 0 0 87
TTGGCTCTGAAGCACCGGCAGGGCAAGAATCACAAGATGCGCATCATCGCCTTTGTCGGT
AGCCCTGTGGAGGACAACGAGAAGGAT
INTRON 4 - 5 95,035,011 95,035,237 227
GTGAGTCCACAGACAGCCTGCCAGG..........TTGATTTTTCTCCCTTTCTTCATAG
5 EXON 5 95,034,942 95,035,010 0 0 69
CTGGTGAAACTAGCTAAACGCCTTAAGAAAGAAAAAGTGAATGTTGACATCATTAATTTT
GGGGAAGAG
INTRON 5 - 6 95,034,782 95,034,941 160
GTAAGTCAGGGTTGCAGAGCATAGG..........CTGTCTTGTGCTCTCTGCTCTACAG
6 EXON 6 95,034,566 95,034,781 0 0 216
GAGGTGAACACAGAGAAGCTGACAGCCTTTGTGAACACACTGAATGGCAAGGATGGAACT
GGGTCCCATCTAGTGACAGTGCCTCCTGGACCTAGCTTGGCTGATGCTCTCATCAGTTCT
CCTATTCTGGCTGGTGAAGGCGGTGCCATGCTGGGTCTTGGTGCCAGTGACTTTGAGTTT
GGAGTAGATCCCAGTGCTGATCCTGAATTGGCCCTG
INTRON 6 - 7 95,034,027 95,034,565 539
GTAAGCAAATGTTGACCCTGGGGTT..........GCCCCCTTGTCTTGCTCTTTACCAG
7 EXON 7 95,033,909 95,034,026 0 1 118
GCCCTTCGAGTCTCTATGGAAGAGCAGCGGCAGCGGCAGGAGGAAGAGGCACGGCGGGCC
GCTGCGGCCTCTGCAGCTGAGGCTGGAATTGCTACACCTGGGACTGAAGGTGAAAGAG
INTRON 7 - 8 95,033,765 95,033,908 144
GTGGATTCTGAACTCCTGGGCCTGA..........ACCCTGGCCTTCTGTCCTTGCCCAG
8 EXON 8 95,033,633 95,033,764 1 1 132
ACTCGGATGACGCCCTACTGAAGATGACCATCAACCAGCAGGAGTTTGGCCGTCCTGGGC
TTCCAGACCTAAGCAGCATGACTGAGGAAGAGCAGATCGCCTACGCCATGCAGATGTCCC
TGCAGGGAACAG
INTRON 8 - 9 95,033,547 95,033,632 86
GTGGGCCATGGCTTGGGTGGCAGGG..........CGGGCTGCTGCTCTCCTTTCCTCAG
9 EXON 9 95,032,705 95,033,546 1 - 842
AGTTTAGCCAAGAATCGGCTGACATGGATGCCAGCTCAGCCATGGACACATCTGATCCAG
TCAAGGTGAGGGCCAGCAGTGAGGCTCTGACCCAGCCAAGTCTGACATCCCCTGCATTCA
GATCTTTATCCTTTTGGGACCGGGGCCTTTCCTCTCAGGCATTTCATAAGAAAGGTCTTG
GAGCAACAGAAGGAAACACTTAGGTGTTTTTATTTCCGTTGTCCTGGAATTTTCTAGTGG
GAGTGGCCTGTCATCTCCAACGCTAACAGTTCTGTGGGGCTCCTCCCAAGAGGGCCTGGG
GGAAAGGAGTGCTGGTTCCCCCCCCCCCCCAAGAAAGCTGCTGTGGTGGCATCTGGTTTC
CTCTCTGAGCTCCGTTAGCAGAGGTCTCCGGCTTCTGTGCTTTGGGGAATGCACACCATT
CATGGACATCATGGGTCTTGTTGGCTTGCCCCTCTCATTCCCTTAGCTGCACACAGGAGT
GGGCAGCAACATGTTGCTGTCCCTTACAACATGTTGTTGCCCCCTGTCACCGCACTCCGC
TGCTCCGTGTGCCTTTTTTCAGGAGGAGGATGACTATGACGTCATGCAGGACCCGGAGTT
CCTTCAGAGCGTCCTAGAGAACCTTCCAGGTGTGGATCCCAACAATGCAGCCATTCGAAG
TGTCATGGGGGCTCTGGCCTCCCAGGCCACCAAGGATGGCAAGAATGACAAGAAAGAGGA
AGAGAAGAAGTGAGACCGGAGGGAGGGGTAGCTGTGTCTGCCCGGGGACTGTAAAGACGG
GGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTGGCAAGT
TT
3' upstream sequence
TCTCCTTTTGCTTCAAATAGTGATAGCTTTGCACACAGTGGAGGAGTGGGCCTGAAGGAA
TGTCCTTACCTTCTGCTCTGCAGATGGCTGCTGCCTGTCATCTCCATCTCTGACAGTCCC
TTGGGCTTTTTCTTTTTCATTAAGAGAATCTTTACACCGGGCAGTGGTGGCGCACGCCTT
TAATCCCAGCACTTGGGAGGCAGAGGCTCGCGGATTTCTGAGTTTGAGGCCAGCCTGGTC
TACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGGAAAAAAAA
AAGAGAGAGAGAGGAGAGAAGCTTTGCTGAGGACCCACTCTTTTTTTTTTTTTTTTTTTT
TAAAGATTTATTTATTTATTACATGTAATGTACACTGTAGCTATCCTCAGATACTCCAGA
AGAGGGAGTCAGATCTCATTGGTTGTAAGCCACCATGTGGTTGCTGGGATTTGAACTTCG
GACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGAGGAC
CCACTCTTAAATCCTAAGGCCACTGAGATGAATCGAGGACAGCACCAGGGTCATGGTCTA
GGGACAAGAACAGCCCATGTCTGATTCAAAGAATATGTATGTACGTATGTGTGGGTGTGT
ATGTATGTATGTATGTGTGTATGTATGTATGTATGTATTTTTGAGACAGGGTCTCACTAT
GTAGCCTAGACTGATCTATAATTATTATGTATACTAAATTGACCTCAAACTTACAGAGAC
CCATTAGCCTCTGCCTCTGTATTGCTGGGAGTATGAACCACCATGCTGGCTCAAAAGAGA
ATTATGAGGGATCTGGCAAGATGGCTCAGTGGAAAAAGGCACTTATCATGAAAAATCCTA
AGAATATTTTAGAAATTTTTATGGTGGTACACTCCTTTAATCCCAGCACTTGGGAGGTAG
AGGCAGGTGGGTCTCTGTCTGGGTCAAGGCAAGCTTGGTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Psmd4 (ENSMUSG00000005625)
Transcript ID ENSMUST00000117355
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 369 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information