MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Tpm3 (ENSMUSG00000027940)

Cross Reference

EMBL	AC163616
GO	GO:0001725, GO:0002102, GO:0005515, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name	Tpm3-005
OTTP	OTTMUSP00000038133
OTTT	OTTMUST00000073606
RefSeq_mRNA	NM_001293749.1
RefSeq_peptide	NP_001280678
RefSeq_peptide_predicted	XP_006501902.1
UCSC	uc056ztn.1

UniParc	UPI0000196051
Uniprot/SPTREMBL	D3Z6I8
Vega_transcript	OTTMUST00000073606, Tpm3-005
Vega_translation	187788, OTTMUSP00000038133

Definition

protein_id:ENSMUSP00000113219
translation:

MAGTTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL
TLHGLCD

Chromosome

Length
Position(start - end)

18,721
90,079,732 - 90,098,454

Orient to Chromosome

plus

Link

Location : (3:90079732-90098454)
/

Detail Map

name	Tpm3 (ENSMUSG00000027940)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Tpm3 note : tropomyosin 3, gamma [Source:MGI Symbol;Acc:MGI:1890149]

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000121503

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119570

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000062193

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000029549

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000118566

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119158

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000149432

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000127955

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_001280677.2 RefSeq_mRNA:NM_001293748.1 RefSeq_peptide_predicted:XP_011238481.1 RefSeq_peptide_predicted:XP_011238482.1 RefSeq_peptide_predicted:XP_011238484.1 Vega_transcript:OTTMUST00000073539 Vega_transcript:Tpm3-002 UCSC:uc008qbf.3 MGI_trans_name:Tpm3-002 Vega_translation:187784 Vega_translation:OTTMUSP00000038083 OTTP:OTTMUSP00000038083 OTTT:OTTMUST00000073539 UniParc:UPI00000283A1
definition	note : transcript_id=ENSMUST00000121503 protein_id : ENSMUSP00000113578 translation : MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISDELDHALNDMTSI

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_071709.3 RefSeq_mRNA:NM_022314.3 RefSeq_peptide_predicted:XP_011238483.1 Vega_transcript:OTTMUST00000073538 Vega_transcript:Tpm3-001 Uniprot/SPTREMBL:E9Q5J9 UCSC:uc008qbg.2 EMBL:AC163616 GO:GO:0001725 GO:GO:0002102 GO:GO:0005515 GO:GO:0005737 GO:GO:0030426 GO:GO:0030863 GO:GO:0031941 GO:GO:0032154 GO:GO:0043005 GO:GO:0070062 MGI_trans_name:Tpm3-001 Vega_translation:187785 Vega_translation:OTTMUSP00000038082 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000038082 OTTT:OTTMUST00000073538 UniParc:UPI000154FED0
definition	note : transcript_id=ENSMUST00000119570 protein_id : ENSMUSP00000113978 translation : MMEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS38499.1 Uniprot/SPTREMBL:Q8K0Z5 UCSC:uc008qbg.2 EMBL:AC163616 EMBL:BC029186 GO:GO:0001725 GO:GO:0002102 GO:GO:0005515 GO:GO:0005737 GO:GO:0030426 GO:GO:0030863 GO:GO:0031941 GO:GO:0032154 GO:GO:0043005 GO:GO:0070062 MGI_trans_name:Tpm3-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH29186.1 UniParc:UPI00000282ED
definition	note : transcript_id=ENSMUST00000062193 protein_id : ENSMUSP00000062920 translation : MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS57223.1 RefSeq_peptide:NP_001240667 RefSeq_peptide:NP_001258693.1 RefSeq_mRNA:NM_001253738.1 RefSeq_mRNA:NM_001271764.1 Vega_transcript:OTTMUST00000073540 Vega_transcript:Tpm3-003 Uniprot/SPTREMBL:Q58E70 UCSC:uc008qbj.2 Fantom:E430027O16 Fantom:F520012P16 Fantom:G930025M02 Fantom:G930027B15 Fantom:I1C0015O22 Fantom:I1C0047B08 Fantom:I1C0048D10 Fantom:I420044B07 Fantom:I530019A02 Fantom:I730059D11 Fantom:I830030D09 Fantom:I830031A16 Fantom:I830031O11 Fantom:I830032A04 Fantom:I830032B17 Fantom:I830081O10 Fantom:I830119I22 Fantom:I920026I06 Fantom:I920059N07 Fantom:I920080B16 Fantom:I920097N04 EMBL:AK145238 EMBL:AK145243 EMBL:AK145804 EMBL:AK146349 EMBL:AK146557 EMBL:AK151441 EMBL:AK151500 EMBL:AK151578 EMBL:AK151595 EMBL:AK151602 EMBL:AK152659 EMBL:AK153031 EMBL:AK160011 EMBL:AK165428 EMBL:AK166836 EMBL:AK167268 EMBL:AK167534 EMBL:AK168843 EMBL:AK169102 EMBL:AK169245 EMBL:AK169821 EMBL:BC092045 MGI_trans_name:Tpm3-003 Vega_translation:187786 Vega_translation:OTTMUSP00000038084 protein_id:AAH92045.1 protein_id:BAE26319.1 protein_id:BAE26321.1 protein_id:BAE26659.1 protein_id:BAE27101.1 protein_id:BAE27258.1 protein_id:BAE30403.1 protein_id:BAE30451.1 protein_id:BAE30518.1 protein_id:BAE30535.1 protein_id:BAE30542.1 protein_id:BAE31395.1 protein_id:BAE31663.1 protein_id:BAE35558.1 protein_id:BAE38183.1 protein_id:BAE39058.1 protein_id:BAE39381.1 protein_id:BAE39603.1 protein_id:BAE40666.1 protein_id:BAE40884.1 protein_id:BAE41009.1 protein_id:BAE41391.1 OTTP:OTTMUSP00000038084 OTTT:OTTMUST00000073540 UniParc:UPI0000004196
definition	note : transcript_id=ENSMUST00000029549 protein_id : ENSMUSP00000029549 translation : MAGTTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_001240669.1 RefSeq_mRNA:NM_001253740.1 RefSeq_peptide_predicted:XP_006501898.1 RefSeq_peptide_predicted:XP_006501899.1 RefSeq_peptide_predicted:XP_006501901.1 RefSeq_peptide_predicted:XP_011238485.1 Vega_transcript:OTTMUST00000073541 Vega_transcript:Tpm3-004 Uniprot/SPTREMBL:E9Q7Q3 UCSC:uc029ung.1 EMBL:AC163616 GO:GO:0001725 GO:GO:0002102 GO:GO:0005515 GO:GO:0005737 GO:GO:0030426 GO:GO:0030863 GO:GO:0031941 GO:GO:0032154 GO:GO:0043005 GO:GO:0070062 MGI_trans_name:Tpm3-004 Vega_translation:187787 Vega_translation:OTTMUSP00000038085 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000038085 OTTT:OTTMUST00000073541 UniParc:UPI00016116E9
definition	note : transcript_id=ENSMUST00000118566 protein_id : ENSMUSP00000113056 translation : MAGTTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISDELDHALNDMTSI

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_001280678 RefSeq_mRNA:NM_001293749.1 RefSeq_peptide_predicted:XP_006501902.1 Vega_transcript:OTTMUST00000073606 Vega_transcript:Tpm3-005 Uniprot/SPTREMBL:D3Z6I8 UCSC:uc056ztn.1 EMBL:AC163616 GO:GO:0001725 GO:GO:0002102 GO:GO:0005515 GO:GO:0005737 GO:GO:0030426 GO:GO:0030863 GO:GO:0031941 GO:GO:0032154 GO:GO:0043005 GO:GO:0070062 MGI_trans_name:Tpm3-005 Vega_translation:187788 Vega_translation:OTTMUSP00000038133 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000038133 OTTT:OTTMUST00000073606 UniParc:UPI0000196051
definition	note : transcript_id=ENSMUST00000119158 protein_id : ENSMUSP00000113219 translation : MAGTTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKLTLHGLCD

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073608 Vega_transcript:Tpm3-007 Uniprot/SPTREMBL:D3YVR0 EMBL:AC163616 GO:GO:0001725 GO:GO:0002102 GO:GO:0005515 GO:GO:0005737 GO:GO:0030426 GO:GO:0030863 GO:GO:0031941 GO:GO:0032154 GO:GO:0043005 GO:GO:0070062 MGI_trans_name:Tpm3-007 Vega_translation:187789 Vega_translation:OTTMUSP00000038134 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000038134 OTTT:OTTMUST00000073608 UniParc:UPI00016116DB
definition	note : transcript_id=ENSMUST00000149432 protein_id : ENSMUSP00000114229 translation : MKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEEL

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073609 Vega_transcript:Tpm3-008 MGI_trans_name:Tpm3-008 Vega_translation:187790 Vega_translation:OTTMUSP00000038135 OTTP:OTTMUSP00000038135 OTTT:OTTMUST00000073609 UniParc:UPI00016116DA
definition	note : transcript_id=ENSMUST00000127955 protein_id : ENSMUSP00000115565 translation : MKVIENRAL

name
type	STS
link
xref	UniSTS_NUM:273261 UniSTS:PMC355842P1
definition	note : map_weight=1 standard_name : PMC355842P1

name
type	STS
link
xref	UniSTS_NUM:162866 UniSTS:RH126154 UniSTS:C77371 MGI:D3Ertd34e
definition	note : map_weight=1 standard_name : RH126154

name
type	STS
link
xref	UniSTS_NUM:125645 UniSTS:U04541
definition	note : map_weight=1 standard_name : U04541

name
type	STS
link
xref	UniSTS_NUM:124638 UniSTS:46.MMHAP94FRH10.seq
definition	note : map_weight=1 standard_name : 46.MMHAP94FRH10.seq

name
type	misc_feature
link
xref
definition	note : contig AC163616.3 32900..212857(1)

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073612 Vega_transcript:OTTMUST00000073612 MGI_trans_name:Tpm3-011 OTTT:OTTMUST00000073612
definition	note : retained_intron note : transcript_id=ENSMUST00000147430

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073607 Vega_transcript:OTTMUST00000073607 MGI_trans_name:Tpm3-006 OTTT:OTTMUST00000073607
definition	note : retained_intron note : transcript_id=ENSMUST00000131354

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073610 Vega_transcript:OTTMUST00000073610 MGI_trans_name:Tpm3-009 OTTT:OTTMUST00000073610
definition	note : retained_intron note : transcript_id=ENSMUST00000149115

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073611 Vega_transcript:OTTMUST00000073611 MGI_trans_name:Tpm3-010 OTTT:OTTMUST00000073611
definition	note : retained_intron note : transcript_id=ENSMUST00000133281

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073613 Vega_transcript:OTTMUST00000073613 MGI_trans_name:Tpm3-012 OTTT:OTTMUST00000073613
definition	note : retained_intron note : transcript_id=ENSMUST00000151798

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073614 Vega_transcript:OTTMUST00000073614 MGI_trans_name:Tpm3-013 OTTT:OTTMUST00000073614
definition	note : retained_intron note : transcript_id=ENSMUST00000133361

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073615 Vega_transcript:OTTMUST00000073615 MGI_trans_name:Tpm3-014 OTTT:OTTMUST00000073615
definition	note : retained_intron note : transcript_id=ENSMUST00000149734

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073616 Vega_transcript:OTTMUST00000073616 MGI_trans_name:Tpm3-015 OTTT:OTTMUST00000073616
definition	note : retained_intron note : transcript_id=ENSMUST00000143281

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073617 Vega_transcript:OTTMUST00000073617 MGI_trans_name:Tpm3-016 OTTT:OTTMUST00000073617
definition	note : processed_transcript note : transcript_id=ENSMUST00000136125

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Tpm3 (ENSMUSG00000027940)
Transcript ID	ENSMUST00000119158

Reports
substitution
cSNPs	0
Insertion	19
Deletion	14
SNPs	-1kb 90074742(c.-4990T>C), 90075657(c.-4075C>T), 90075866(c.-3866C>A), 90076048(c.-3684A>G), 90076143(c.-3589C>T), 90076310(c.-3422T>A), 90076448(c.-3284A>G), 90076465(c.-3267C>T), 90076691(c.-3041T>C), 90076761(c.-2971T>C), 90076848(c.-2884T>C), 90076893(c.-2839C>T), 90076987(c.-2745A>C), 90077022(c.-2710T>C), 90077222(c.-2510C>A), 90077240(c.-2492T>C), 90077307(c.-2425A>G), 90077405(c.-2327T>C), 90077420(c.-2312C>A), 90077441(c.-2291C>T), 90077591(c.-2141G>A), 90077632(c.-2100T>C), 90077650(c.-2082G>A), 90077856(c.-1876T>A), 90077999(c.-1733C>A), 90078203(c.-1529A>G), 90078207(c.-1525C>A), 90078267(c.-1465C>T), 90078392(c.-1340T>C), 90078518(c.-1214G>A), 90078785(c.-947G>C), 90079005(c.-727G>A), 90079009(c.-723C>T), 90079202(c.-530G>A), 90079420(c.-312G>T), 90079487(c.-245G>C), 90079540(c.-192G>C), 90079542(c.-190G>A), 90079548(c.-184C>G), 5'UTR CDS 3'UTR INTRON 90080028(c.132+165A>G), 90081728(c.132+1865G>A), 90082107(c.132+2244T>C), 90082194(c.132+2331A>T), 90082242(c.132+2379T>G), 90082266(c.132+2403G>C), 90082942(c.132+3079G>A), 90083604(c.133-2842A>G), 90083715(c.133-2731T>C), 90083925(c.133-2521T>G), 90084001(c.133-2445A>G), 90084081(c.133-2365G>T), 90084579(c.133-1867C>A), 90085366(c.133-1080A>C), 90085574(c.133-872C>A), 90085585(c.133-861A>G), 90085794(c.133-652A>G), 90085863(c.133-583G>A), 90085888(c.133-558C>T), 90085944(c.133-502T>C), 90085956(c.133-490C>T), 90086049(c.133-397C>T), 90086059(c.133-387C>T), 90086093(c.133-353G>T), 90086223(c.133-223G>A), 90086270(c.133-176C>A), 90086417(c.133-29A>G), 90086944(c.266+365T>A), 90087211(c.267-244G>A), 90087375(c.267-80G>A), 90087587(c.384+15C>T), 90087822(c.455+78T>C), 90087987(c.455+243T>C), 90088058(c.455+314G>A), 90088202(c.455+458T>G), 90088223(c.455+479A>G), 90088300(c.455+556C>T), 90089362(c.531+239G>A), 90089895(c.594+36G>A), 90089897(c.594+38C>A), 90090122(c.664+43C>T), 90090158(c.664+79A>T), 90090313(c.664+234G>A), 90090350(c.664+271T>C), 90090416(c.664+337C>T), 90090554(c.664+475T>A), 90090579(c.664+500A>G), 90090621(c.664+542G>C), 90090680(c.664+601C>T), 90090733(c.664+654T>C), 90090841(c.664+762T>C), 90090864(c.664+785T>G), 90091186(c.664+1107T>C), 90091281(c.664+1202G>A), 90091334(c.664+1255C>T), 90091345(c.664+1266G>A), 90091470(c.664+1391G>A), 90091488(c.664+1409T>C), 90091494(c.664+1415T>C), 90091601(c.664+1522A>C), 90091887(c.664+1808A>G), 90092173(c.664+2094G>C), 90092203(c.664+2124A>T), 90092312(c.664+2233C>G), 90092355(c.664+2276A>T), 90092451(c.664+2372T>A), 90092487(c.664+2408C>T), 90092798(c.664+2719T>C), 90093012(c.664+2933G>A), 90093277(c.664+3198C>T), 90093308(c.664+3229C>T), 90093371(c.664+3292G>A), 90093826(c.664+3747T>G), 90093905(c.664+3826C>T), 90094489(c.665-3886C>T), 90094499(c.665-3876C>T), 90094745(c.665-3630A>G), 90094793(c.665-3582G>A), 90094985(c.665-3390A>G), 90094986(c.665-3389G>C), 90095337(c.665-3038C>T), 90095408(c.665-2967G>T), 90095450(c.665-2925G>A), 90096436(c.665-1939C>T), 90096533(c.665-1842A>G), 90096590(c.665-1785A>T), 90096807(c.665-1568G>A), 90096872(c.665-1503A>G), 90097067(c.665-1308C>G), 90097094(c.665-1281C>T), 90097209(c.665-1166T>A), 90097754(c.665-621T>A), 90097756(c.665-619A>G), 90097846(c.665-529T>A), 90098180(c.665-195C>T), +1kb 90098920(c.466G>A), 90099087(c.633G>C), 90099129(c.675T>C), 90100831(c.2377C>T), 90100858(c.2404C>T), 90101090(c.2636G>A), 90101395(c.2941A>G), 90101529(c.3075C>T), 90101553(c.3099T>G), 90101641(c.3187G>T), 90101723(c.3269A>C), 90101784(c.3330G>T), 90101974(c.3520G>A), 90102382(c.3928C>T), 90102471(c.4017A>T), 90102611(c.4157G>A), 90102773(c.4319A>G), 90102939(c.4485A>G), 90102945(c.4491A>G), 90103032(c.4578T>G), 90103040(c.4586T>G), 90103106(c.4652T>C), 90103146(c.4692A>G), 90103177(c.4723T>C), 90103236(c.4782A>C), 90103304(c.4850T>C), 90103418(c.4964T>C), 90103435(c.4981C>G), 90103538(c.5084T>C), 90103541(c.5087A>T), 90103595(c.5141T>C), 90103705(c.5251T>A),
Insertions	-1kb 90075000 (c.-4732_-4731insCTC), 90075769 (c.-3963_-3962insA), 90076153 (c.-3579_-3578insTTT), 90077816 (c.-1916_-1915insGT), 5'UTR CDS 3'UTR INTRON 90082277 (c.132+2416dupT), 90084062 (c.133-2383_133-2382insTTT), 90089016 (c.456-32_456-31insCCCCCT), 90092060 (c.664+1990dupG), 90094303 (c.665-4076_665-4072dupCAAAA), 90094434 (c.665-3941_665-3940insGTC), +1kb 90099617 (c.1163_1164insT), 90100580 (c.2126_2127insAA), 90100900 (c.2446_2447insC), 90101351 (c.2897_2898insAAAA), 90101684 (c.3230_3231insTC), 90101801 (c.3347_3348insAA), 90102012 (c.3558_3559insTT), 90102299 (c.3845_3846insT), 90103541 (c.5087_5088insT),
Deletions	-1kb 90077271 (c.-2460delG), 5'UTR CDS 3'UTR INTRON 90081404 (c.132+1544_132+1546delCCT), 90081550 (c.132+1704_132+1711delTGTCTGTC), 90082589 (c.132+2742delA), 90085814 (c.133-629_133-627delGAG), 90088067 (c.455+343_455+350delTTTTTTTT), 90089320 (c.531+210delC), 90090436 (c.664+358_664+363delAACAAC), 90095212 (c.665-3161delT), 90096820 (c.665-1543delA), 90096949 (c.665-1417delT), +1kb 90099747 (c.1294_1296delTAC), 90101789 (c.3336_3340delAAATT), 90102290 (c.3837_3838delGG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000119158)	MAGTTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL TLHGLCD*
MSMv4 transcript	MAGTTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL TLHGLCD*
homology	100.00 (248 / 248)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Tpm3 (ENSMUSG00000027940)
Transcript ID	ENSMUST00000119158


..........ATTCCAGGGGTCAAAGAGGGTGACATGTTAACTGCTCATTTGTATGGAGT
CTCTCAAAAGCTACAGGAGACAAGCTTGATATTCAAACAAAACACCTAAGTCCCGAGCTG
ATCCTAACAGAATGCCAACTTGCCCATCTCTTCCATCTGGTAGTTCCTTTATTGACTTCC
AGATGGGAGAGAACTGTCTCAACAGTTTTGGGGGTTGTTTTGAGACAGCGTTTTATGTAG
CTCAGACTAGCCTTAAATTCACCCTGTAGCCAAAGATGACCTTGAATTTCTGCTCTTTCT
ATCTTACCCACTAAGTACCGAATGGTACTTATGGATACGTGCCACTAGGCTAGTTTAAGT
GCTCCTGGAGATTCAGCCCAGGGCTTCGAATGTGCTTGGCTAGTGCTTTACAAACTGAGC
AATATCCACAGCTCCTCCTAATAGATTTTCAAAGGACCTCACTGGGACTCCTTGCAAGGT
GAAGGCTAGAGTCTTCTATCTAGGCTTGTCTCAGAACCTGGTTTTGGAATCTGTCCTAGA
CTGAGTAGAAGTGGAAGCACATGGGATATTTTAAATTGCGGAGCGGGAGCAGACGCAGTG
GTAGGGAGGCACCGGATAAGAGAGGGGTCAACTGCGTAAGTGTTCACGACAGCACCATTT
TAGTAAATGGGACAGCCATTGTTACGAGACAGCCTGGTGGGTGAGGCTAGACTATTAAGC
GCCTCTCAGTTACTATGGTAGCCTTACCAAACCCCGCCCCCTTTACTGGACTAAGGAAAG
ACCGCCCTGAGTGGTCGCCTAGGGTTACTGGGAGGCTCCACCCTTCACTTTCTGCCGACT
GCCGGAGTGGACTGCGTTCCCGCCTGCTTGGCAGGGGGAGGACGCGCGGTGGCGGCGGCG
TCACATCCCGGCGTATGAGTGAGTTCCGGTATTTCAGGGCGGAGCAGGCGGAAGTAGGGT
GAAAAGCGGCTACAACGCCGAGCGGAGGAGGTAGGAACCTGATTTCCAGA
AGCAGCTTGTAGGCACCATGGCCGGGACCACCACCATCGAGGCGGTAAAGCGCAAGATCCAGGTTCTGCAGCAGCAAGCTGATGATGCGGAGGAAAGGGCCGAGCGCCTCCAGCGGGAAGTGGAGGGAGAAAGGCGGGCCCGGGAGCAG
GTACGCACGGAGAGCCGAGGCGCAG..........GTTTTCCATTTCCCATTGATTGAAG
GCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGTGCGCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGCAGAGAAGGCTGCTGATGAGAGTGAGAG
GTGTGTGAATCCCAAAAGAATAGGC..........CATTCTTTCATTCTGTTTCCGGCAG
AGGTATGAAGGTGATTGAAAATCGGGCTCTAAAAGATGAAGAAAAGATGGAACTCCAGGAAATCCAGCTAAAGGAAGCAAAGCACATTGCAGAAGAGGCCGATAGGAAGTATGAAGAG
GTGAGTTGCCTCTGTAGTGCGTGCG..........GCCGTACTGGGGTCTTTTCTTCTAG
GTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGTGCTGAGCTGGCAGAGTC
GTGAGTATTTTGTCTCCAGATCTTG..........TCCTTTGGTATTAAAATGTTCACAG
TAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGAGGCTCAGGCGGAGAAG
GTAGGGCTGGTTTGTGAAGATGCAC..........ATTTGTATTCTACTTTTCTTTACAG
TACTCTCAAAAAGAAGACAAGTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGGAG
GTGAGCTGAGGGGCTGAGCCGCATG..........TCTGTTTGTTGTTGTGCTTCCTCAG
GCAGAGACCCGTGCTGAGTTTGCTGAAAGATCGGTAGCCAAGCTGGAGAAGACCATTGATGACCTGGAAG
GTATGGAGCACATGAGGGCGTGTGA..........CTTCCCCTCTCTGTTGCTGCTGCAG
AGCGTCTCTACAGCCAACTTGAGCGAAACCGCCTGCTTTCTAATGAGCTGAAGCTAACGCTGCATGGTCTTTGTGACTGACGGGCAGGGCTCCCTGATGCCCAGTAAACCCACACCACTGACCTGGACCCAGCAAAAAGCTGATTGCCTTTTAAACCGTTACTGTTCGCCCTAAGCAAGTTGCTTTTTTAATGAGGGCAGCTAGACTACCGTTGATTTCCTGGCAGCCCCCACCAAGTTGCAGTGGCTATTTCTATTCTAGAAGAGCTTGTGGGTGATGAAGAAGGGGCCTGGGAGATTTAGTGCGGAACTTGGAAGCCCTTAGCTGCAGCCTTCTCACCTGTACACTGACTGTAGGGCTTGCTCTCGTGCATGGATATTTTCTAACAATAAAAGCACTGACTTGACAA
GACGTTGTAACTGCTTCATCTGCAGGCCCAGGGTTGGGCTCCTGTGACTGGGTGGAAACA
GGGATGGGCAAGAAGGGTGTGTGGTATGAAAAGGGGCCTGACTTGGGCCTTTTTCTTCCC
TTCCCTGAAGCTCTGCAGTTTACTTGCTAGGCAGGTTAATGCTTGGTGTCCTGCCACCAG
GCTTTCTTCCTGATAGTTTTCCTTCTTGCTGCTTTTGTGTTTAATTGTAAGTCACTCTCC
GAGTCAGCTCTGTTGATAACTTTGCTAAAATCTCAGTGGGGCTTTACTGACAAGAATGCG
TCTCGGTCGTATTTATTCTCCTTGACCTGAGGACTCCTGTCCTCTCCACTCTGAAGAAAG
TACCTACTGTAGGAGGATCCTGTGCCCTTTACTTGAGATTTTGATCTTTGTCCTTGTCTG
GAGTGGTCACACTCTACTGTGGCATTTCAAATAGGTATTGACCTGTGAACAGACCCGGTG
GGTGGGCGCCTGGTGCTTTCAACCGGATCCTTCTGGGACCGAAAGCTGAATAATGCCTTT
TGGTTGCCTGTGGGAGGGAGATGAAATGGCGGATAAGCTGAGCTCCCTCCCCCGGGCAGG
AGAGAAACTCTTTGGCTTCAGTAGGCAAGCCAGAGACCCCACAGAACCCAGGTGTGCAGT
AGCTGCCTTCTGTACCTTCCTTGCAACTGGAGCAAGTCTCAGAACTTGGACCTTTGCTTA
ACTTCTCTTCTTTATTTCCACTAGATAAACTGAAGTGCACCAAAGAGGAGCATCTCTGTA
CACAAAGGATGCTGGACCAGACCCTGCTGGACCTGAACGAGATGTAGACCTCCCCATCCC
TGCCCCGCGGCCATTCCTCCCTCTGACCTTGACTCCGCCAGAGGCCAGCCTCCCTGAAGC
TGACCTTGAAACTGAGGGCTGATCTTTTTAACTGAAGGCTGCTTTCCCTCCTGCCACCCC
CTTTTACTACCCCTCTTGTCTTTTTCACAAAACTGTGTCA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........ATTCCAGGGGTCAAAGAGGGTGACATGTTAACTGCTCATTTGTATGGAGT CTCTCAAAAGCTACAGGAGACAAGCTTGATATTCAAACAAAACACCTAAGTCCCGAGCTG ATCCTAACAGAATGCCAACTTGCCCATCTCTTCCATCTGGTAGTTCCTTTATTGACTTCC AGATGGGAGAGAACTGTCTCAACAGTTTTGGGGGTTGTTTTGAGACAGCGTTTTATGTAG CTCAGACTAGCCTTAAATTCACCCTGTAGCCAAAGATGACCTTGAATTTCTGCTCTTTCT ATCTTACCCACTAAGTACCGAATGGTACTTATGGATACGTGCCACTAGGCTAGTTTAAGT GCTCCTGGAGATTCAGCCCAGGGCTTCGAATGTGCTTGGCTAGTGCTTTACAAACTGAGC AATATCCACAGCTCCTCCTAATAGATTTTCAAAGGACCTCACTGGGACTCCTTGCAAGGT GAAGGCTAGAGTCTTCTATCTAGGCTTGTCTCAGAACCTGGTTTTGGAATCTGTCCTAGA CTGAGTAGAAGTGGAAGCACATGGGATATTTTAAATTGCGGAGCGGGAGCAGACGCAGTG GTAGGGAGGCACCGGATAAGAGAGGGGTCAACTGCGTAAGTGTTCACGACAGCACCATTT TAGTAAATGGGACAGCCATTGTTACGAGACAGCCTGGTGGGTGAGGCTAGACTATTAAGC GCCTCTCAGTTACTATGGTAGCCTTACCAAACCCCGCCCCCTTTACTGGACTAAGGAAAG ACCGCCCTGAGTGGTCGCCTAGGGTTACTGGGAGGCTCCACCCTTCACTTTCTGCCGACT GCCGGAGTGGACTGCGTTCCCGCCTGCTTGGCAGGGGGAGGACGCGCGGTGGCGGCGGCG TCACATCCCGGCGTATGAGTGAGTTCCGGTATTTCAGGGCGGAGCAGGCGGAAGTAGGGT GAAAAGCGGCTACAACGCCGAGCGGAGGAGGTAGGAACCTGATTTCCAGA
1	EXON 1	90,079,715	90,079,863	-	0	149	AGCAGCTTGTAGGCACCATGGCCGGGACCACCACCATCGAGGCGGTAAAGCGCAAGATCC AGGTTCTGCAGCAGCAAGCTGATGATGCGGAGGAAAGGGCCGAGCGCCTCCAGCGGGAAG TGGAGGGAGAAAGGCGGGCCCGGGAGCAG
	INTRON 1 - 2	90,079,864	90,086,445			6,582	GTACGCACGGAGAGCCGAGGCGCAG..........GTTTTCCATTTCCCATTGATTGAAG
2	EXON 2	90,086,446	90,086,579	0	2	134	GCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGAC CGTGCGCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGCAGAGAAGGCTGCT GATGAGAGTGAGAG
	INTRON 2 - 3	90,086,580	90,087,454			875	GTGTGTGAATCCCAAAAGAATAGGC..........CATTCTTTCATTCTGTTTCCGGCAG
3	EXON 3	90,087,455	90,087,572	2	0	118	AGGTATGAAGGTGATTGAAAATCGGGCTCTAAAAGATGAAGAAAAGATGGAACTCCAGGA AATCCAGCTAAAGGAAGCAAAGCACATTGCAGAAGAGGCCGATAGGAAGTATGAAGAG
	INTRON 3 - 4	90,087,573	90,087,673			101	GTGAGTTGCCTCTGTAGTGCGTGCG..........GCCGTACTGGGGTCTTTTCTTCTAG
4	EXON 4	90,087,674	90,087,744	0	2	71	GTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGTGCTGAG CTGGCAGAGTC
	INTRON 4 - 5	90,087,745	90,089,047			1,303	GTGAGTATTTTGTCTCCAGATCTTG..........TCCTTTGGTATTAAAATGTTCACAG
5	EXON 5	90,089,048	90,089,123	2	0	76	TAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGA GGCTCAGGCGGAGAAG
	INTRON 5 - 6	90,089,124	90,089,796			673	GTAGGGCTGGTTTGTGAAGATGCAC..........ATTTGTATTCTACTTTTCTTTACAG
6	EXON 6	90,089,797	90,089,859	0	0	63	TACTCTCAAAAAGAAGACAAGTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAG GAG
	INTRON 6 - 7	90,089,860	90,090,009			150	GTGAGCTGAGGGGCTGAGCCGCATG..........TCTGTTTGTTGTTGTGCTTCCTCAG
7	EXON 7	90,090,010	90,090,079	0	1	70	GCAGAGACCCGTGCTGAGTTTGCTGAAAGATCGGTAGCCAAGCTGGAGAAGACCATTGAT GACCTGGAAG
	INTRON 7 - 8	90,090,080	90,098,374			8,295	GTATGGAGCACATGAGGGCGTGTGA..........CTTCCCCTCTCTGTTGCTGCTGCAG
8	EXON 8	90,098,375	90,098,783	1	-	409	AGCGTCTCTACAGCCAACTTGAGCGAAACCGCCTGCTTTCTAATGAGCTGAAGCTAACGC TGCATGGTCTTTGTGACTGACGGGCAGGGCTCCCTGATGCCCAGTAAACCCACACCACTG ACCTGGACCCAGCAAAAAGCTGATTGCCTTTTAAACCGTTACTGTTCGCCCTAAGCAAGT TGCTTTTTTAATGAGGGCAGCTAGACTACCGTTGATTTCCTGGCAGCCCCCACCAAGTTG CAGTGGCTATTTCTATTCTAGAAGAGCTTGTGGGTGATGAAGAAGGGGCCTGGGAGATTT AGTGCGGAACTTGGAAGCCCTTAGCTGCAGCCTTCTCACCTGTACACTGACTGTAGGGCT TGCTCTCGTGCATGGATATTTTCTAACAATAAAAGCACTGACTTGACAA
	3' upstream sequence						GACGTTGTAACTGCTTCATCTGCAGGCCCAGGGTTGGGCTCCTGTGACTGGGTGGAAACA GGGATGGGCAAGAAGGGTGTGTGGTATGAAAAGGGGCCTGACTTGGGCCTTTTTCTTCCC TTCCCTGAAGCTCTGCAGTTTACTTGCTAGGCAGGTTAATGCTTGGTGTCCTGCCACCAG GCTTTCTTCCTGATAGTTTTCCTTCTTGCTGCTTTTGTGTTTAATTGTAAGTCACTCTCC GAGTCAGCTCTGTTGATAACTTTGCTAAAATCTCAGTGGGGCTTTACTGACAAGAATGCG TCTCGGTCGTATTTATTCTCCTTGACCTGAGGACTCCTGTCCTCTCCACTCTGAAGAAAG TACCTACTGTAGGAGGATCCTGTGCCCTTTACTTGAGATTTTGATCTTTGTCCTTGTCTG GAGTGGTCACACTCTACTGTGGCATTTCAAATAGGTATTGACCTGTGAACAGACCCGGTG GGTGGGCGCCTGGTGCTTTCAACCGGATCCTTCTGGGACCGAAAGCTGAATAATGCCTTT TGGTTGCCTGTGGGAGGGAGATGAAATGGCGGATAAGCTGAGCTCCCTCCCCCGGGCAGG AGAGAAACTCTTTGGCTTCAGTAGGCAAGCCAGAGACCCCACAGAACCCAGGTGTGCAGT AGCTGCCTTCTGTACCTTCCTTGCAACTGGAGCAAGTCTCAGAACTTGGACCTTTGCTTA ACTTCTCTTCTTTATTTCCACTAGATAAACTGAAGTGCACCAAAGAGGAGCATCTCTGTA CACAAAGGATGCTGGACCAGACCCTGCTGGACCTGAACGAGATGTAGACCTCCCCATCCC TGCCCCGCGGCCATTCCTCCCTCTGACCTTGACTCCGCCAGAGGCCAGCCTCCCTGAAGC TGACCTTGAAACTGAGGGCTGATCTTTTTAACTGAAGGCTGCTTTCCCTCCTGCCACCCC CTTTTACTACCCCTCTTGTCTTTTTCACAAAACTGTGTCA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Tpm3 (ENSMUSG00000027940)
Transcript ID	ENSMUST00000119158

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 248 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information