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Target CDS Information

Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Cross Reference
EMBL AC140443, AC160765
GO GO:0000288, GO:0003723, GO:0003730, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0003729, ...show all
MGI_trans_name Auh-003
OTTP OTTMUSP00000032440
OTTT OTTMUST00000065170
UCSC uc007qnf.1
UniParc UPI0000354721
Uniprot/SPTREMBL E9Q6L3
Vega_transcript Auh-003, OTTMUST00000065170
Vega_translation 214469, OTTMUSP00000032440
Definition protein_id:ENSMUSP00000113659
translation:
MAAAAPGALGALRTVGVRLVAACCARLGPAAWARGTAPRRGYSSEVKTEDELRVRHLEEE
NRGIVVLGINRAYGKNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAE

Chromosome 13
Length
Position(start - end)
20,329
52,909,311 - 52,929,641
Orient to Chromosome minus
Link Location : (13:52909311-52929641)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Transcript ID ENSMUST00000119311
Reports
substitution
cSNPs2
Insertion10
Deletion23
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num1
synonymous substitutions 52929606 (p.Leu12Leu),
non-synonymous substitutions 52929598 (p.Val15Gly),
B6 transcript
(ENSMUST00000119311)
MAAAAPGALGALRTVGVRLVAACCARLGPAAWARGTAPRRGYSSEVKTEDELRVRHLEEE
NRGIVVLGINRAYGKNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAE*
MSMv4 transcript
MAAAAPGALGALRTGGVRLVAACCARLGPAAWARGTAPRRGYSSEVKTEDELRVRHLEEE
NRGIVVLGINRAYGKNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAE*
homology99.14 (116 / 116)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Transcript ID ENSMUST00000119311
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGGTCTGCCTGCTTGTTTGCGTGAGGGTGCCAGATCCTCTGGAACTTGAT
TTACAGACAACTCTGTGCTGCCATGCAGGTGTGGGGAATTGAATTTGGGGGTCCTCCGGA
AGAGCAGCAAGTGCTCTTAACCACTGAGCCATCTCTCTAGTCCTTATACCGGAATTTATA
TGGCCAGAGTGTAATTTGCTTGTCTGGAAGGACAGGGAATACTCTAAGGAGACATTCTAT
CTCTTCCTTTAGATTCAGACTAGGAAGGCTCGCTCCTCAGGGGACTGGAAAATCTCCACT
CCCAACCCCCCCCCCGCCCCCCCCCCCAGTGGAGAAGGAAAAGCTTAAATTTCTCACAGA
TAGTGCTGGGTCAAAGATGAAAGGGACCACACATTAACCTGGGCCTGGCTATGCATGATT
TTGGCTCTCTACTTCAACTTGTGTGAGGCTTCTGTCTAAAGATAAGTTCCTCCTCTGACT
GGTCCTAAACTTCCCCATCTTCACCTGGGATTCAGGGAAGAGAGGAGGGAGTCCCCACTG
TTTTTTTTTTTTTTTTTTTCTTTTTGAGACAGGGTTTCTATGTCTCTGTCAGACCAGGCT
TGCCTCTGCCTCCCAAGTGCTGGGACTAAAGGTGTGTGCCACCACCGCCAGGTGGGAGTC
CCCACTGTTAAAGACCTTGTGGATTTCAACAATCTGATGATACACAGGGGAGGGGAACAA
GGGTCTGTCTTTCGAGTATCTTCCTTCCTTCCGGGATGGTCAGTCACAAGCCTACTATGG
ACCAAGTGCATGGAGGCAAGACCCTCTTGTCCTCTTCATTTAAGCGTTTCCACACTTTAA
AGATGCCTCTCCTTTTCTGAGCTGGCAAAACATTAAAGCTACCCAGGCGACCTAGGCAAA
GAGTGCCTGGGCGGGGCCAGACAACGAGGGGCGGGGCCAAAGCGACCGACGCCTGTCGTG
TGCGTGCGCGGCTCCAAGCGGGGGGCGGAGTCTGGCCACGGGCGCCCGCT
1 EXON 1 52,929,455 52,929,654 - 1 200
GTAAACATACAACATGGCGGCGGCGGCTCCAGGCGCTCTGGGCGCCTTAAGAACGGGTGG
CGTCCGCCTGGTGGCCGCGTGCTGCGCGCGGCTCGGCCCCGCGGCCTGGGCTAGGGGTAC
CGCCCCGAGGAGGGGCTACAGCTCGGAGGTGAAGACGGAGGATGAGTTGCGCGTGCGGCA
CCTGGAGGAGGAGAACCGAG
INTRON 1 - 2 52,919,267 52,929,454 10,188
GTGAGCTGCAGGCAAGCGCGGGCGA..........GTCCTTCTTCTCCCTCCCTAACCAG
2 EXON 2 52,919,199 52,919,266 1 0 68
GCATTGTGGTGCTCGGGATTAACAGAGCTTATGGGAAAAATGCACTCAGTAAAAATCTCC
TCAAGATG
INTRON 2 - 3 52,919,089 52,919,198 110
GTGAGTGGAAGACTACGCTGTTTGC..........CCCCCTCCCCCCTATCTTGGTTTAG
3 EXON 3 52,919,001 52,919,088 0 1 88
TTATCAAAAGCGGTGGATGCATTAAAGTCAGATAAGAAAGTTCGGACCATTATCATCAGA
AGTGAAGTCCCTGGGATATTCTGTGCTG
INTRON 3 - 4 52,909,316 52,919,000 9,685
GTAGGTAAAATAATCTCCTGTTGTC..........TCTTACATTTGATCTTCTTCTCCAG
4 EXON 4 52,907,045 52,909,315 1 - 2,271
AGTGACCTTTTCACGGTTATGCGCCTGCGCTCTCTTCCGTCGATCCTGCTAGGATTCCCA
TCGGTTCCAAGGAAGTAATTGATTGGCTGTCATTAACTTCTAACTCTGTTTCCGCCTCAG
CAGACCAGCCGGAATACTGTCCTAGATTTTGTACATACCCTTTTCTTAGCACATCGGAGA
TACCCATTAGTAATGACGCTGCTGGCTCATCTTGCCTTTGGCCTGGCCACTCAGCACTTT
CTGCACACAACCCAAGTGATTGATCTCAGAGCACTGCGCCTGCCCAGCATCACCGCTGTC
TGGAAGGCTAGCTGAGGGCCCAGACCTGCCGGGCTAGCGACCTGCTGCACTGATATGCAC
AGGAGGCTTGCCAGATGGAAGCCACAGATCTCATGGTGTGGATGGAGATTTTCCTGCTCT
GTCCATTGGGCCTGTGGACGATATAGTGTCCCCTGTTAGGTGGAGGAAGGGGTCTTTGAC
AACAACAAATGATGCTGGGAGCCAGAAATCAGTCATGCAAGTAGTGGCCTCAAGCCACTT
GGAGAGACATGGGCACTTAGCCTACCCTGGTGCCTCCAGAATCACAGGCCTGCCTAGAGA
GACTGGGTGTGACCCACTGTGATGGTTTGAATATGCTTGGTCCAAGGAATAACATTATTA
GGAGGTGTGGCCTTGTTAGAATAGATGTGTCACTGTGGACGTGGGCTTCAAGACCCTCGT
CCTAGCTGCCTAGAAGCCAATCTTCTGCCAGCAGCCTTCAGATCAGATGAAGATGTAGAA
CTCTCCGCTCTTCCATCCCTGTGTCTGCCTGGATGCTGCCGTGCTCCCACCTTGATGATA
ATGGGCTGAACCTGTAAGCCAGGCACAATTAAGTGTTGTTTTTATGAGTTGCCTTGGTCA
TGGTGTCTGTTCACAGCAGTCAAACCCTAAGACACTCATCTAGAGATAATGACAGACACG
TCTGTAGTTGCTTTCCTAGCAACAGCAGGGCAGCTGACACCAAGCACGTTAGGTTTCATC
TGCCCTGGCCACAACCTCTTCTGCCCTGTGCCCTGCCTTTGCCCTCTTCTGTCACCTCTG
ACAGACAGCCCTTATTCTCTGGCAGACAAAGCTCATTCTCTTCCCAGACTCAGTACACCT
ATTGCTTGGAGCCAACTTGCCTCAGATCTTCCAGCCTCTGTAACTTTAATTTTTTTCAAA
TCTTATTTTTAATGATGGCTTTTAAAAACACTTTAACCTCCCTATAGCCCGCCTCCAACA
AGTGCTAGTGGAAAAGAAAGGATGGGGGTGGGGGAAGTGGACCTGTTTAGAAAGCAACTC
CAGTCTGTGTTGTCTGGAAATCTGGAAATCGGCAGTTCAGTTCACAGGTTAGCAGGCAGT
GGCAGCATGGTCCACTTGCAAACACCTCACAGATACACCAGCAATCGAGTTCGGAAGTCA
GGTTAGCAACAGCAGTGACACGACCTAGCAGAGATAGCCAGGTCTCAGCCTTGGCTCGAG
TCAGCAGGAGGGACCTTGCGGGTGGGGGGGAAACCAAGAGAAGTTCTCAGCCTCTCTCAG
GGAAGCGAAGATATGAGAGCCACAAACATCACGCAGCTAGCTGGACCAGCAAGCCAAGCT
CTGTCTCCATCGTTCCGTGGAGTCCTATTTATACCCTCCCAACATCGCATGTTTACCACG
TGCCTTGCCTCGGCAAGCTCATCCTATCAGCCCGAGTCCTCGGAAGCTGCAACAAACTAC
AGCACACCACCGGAAGTTTTTTTGTGCGTTTCTCTCTATGGAGTCCCGACAAATGCAGCT
CAACTACACAGTGTAAGGTGGACCAATACACGCATGTCATTAGCAAAGAATCCTTATCAC
GTGTCCTTTCACGAGCTTGCTTCAGCAGAGCATCCCCTCTCCTGTGTCTGCTTCAGCGAA
ACGTTCCTCCTTCACCAGGCTGCCTTAGCCTTTCACCTGTGACCACTTTGACGGAAGGTT
CCTTCACGTGTCTGCCCCAGCTAAACACCATCCAACCGACTTTCCAAAGAACCCTTAAGT
TTCCACTTTGGTCCTCAGAGGTGGTCCCCATTCACCTAACTATCCATTTTACTTCTGTAA
AAGTCCACCGATGCTGGAGAGCTGGCTCAGAAGTTAAGAACACTTACTGCAGGTTGCAGA
GGACCCGAGTTTGGTTCCCAGCACTCACGGCAGCCTGTAGTTCTTGGAAGCACACATTTA
CCTCACGTGTACCTACCATAGTTGACAATAATAAAAACCAGTCCATCTTTC
3' upstream sequence
TGTTTGAGGCTGCTCTCTCACTGAAGCTGGAGCGTATTCGTTCGGCTAAGGTGGTCGGCT
GCTGAGCTTCAGGGATTCTCCTGGTGCTCCCCATTATGGAAGTGTGCTCCCAACTCAGAC
CCTCGTGCTTGCATAGCAGCTGCCCACCCAGCCGCACATCTTTCTCACTCACAGTTTATT
AGTAGCTTGTTTGTAACATGGCGGATGTAGCACTGAGAGGCCATACTATTGAGATATACA
GGTCCCTAAAGGCACTGTTTTGAAAGGTGTGTAGGATATTTTCCCTCCAGTGTGCTTTTG
TTGCATCCCAGATTTAGGTTCCCTTCATTGTATCTTATCTTGACTATATAAATGTCGACA
TGGTTTCAGAAGTTAGAACTGCAGAGGCGGCACCTTAGGAAAGCCCGTGCCCTCACCACT
GTACCCTTGCTTACGTCAGGTGGTAGTATACTCGGGAAACCGTTCCATGTGAGTTCCCAG
AACCGTGAAGGTGACCGCCATGAAAATGGGGTAAGTGGGACTCTCTGGAGGAGCCCTGGT
CAGCGTGCATGTGGGTGGAGTCCTTTACCCTATGAGGACAGCAGGGGTCTGGTGCCGGGC
AGGAGCAGAAGTTGAGAAAAAGCCTGAGGAAAACTGGAGTGAGTCCTGGTGGAATCCTGC
ACCACAGCTGCCCTGTGCTAGCCAGGTTTTTTAATTGGAAATTTTATGCTTAATTAGCAT
CCAAGGGGTGTTTGTCCTGGAGGAGATTCAGGCAGCTTTTCCACTACAAGCATTGCTGGG
GGCCTGGTAAGCCACCAAGCTCTGCTCTTCCAGAGAGCCTCTCTCCTCCTTAGCATCACC
TACCCATTCGCTCTCGATTCAGAGTGTCTAGAAATTTCCTGTGATAACTAGCCTGGTCTA
TAGGCCCCCACTGATTAAGGTCACGTTCCCACCCCACCCCTTTTGTGAGCATTATGATAG
TTTATGTAGCAAAAAGTTGCCTATAAAAATGCATATGAGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Auh (ENSMUSG00000021460)
Transcript ID ENSMUST00000119311
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 116 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information