MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cap2 (ENSMUSG00000021373)

Cross Reference

EMBL	AC124598, AC138329
GO	GO:0000902, GO:0003779, GO:0007010, ...show all
goslim_goa	GO:0000902, GO:0003674, GO:0005575, ...show all
MGI_trans_name	Cap2-002
OTTP	OTTMUSP00000037424
OTTT	OTTMUST00000072620
UCSC	uc007qhg.2
UniParc	UPI0001611548
Uniprot/SPTREMBL	D3YTR7
Vega_transcript	Cap2-002, OTTMUST00000072620

Vega_translation

214409, OTTMUSP00000037424

Definition

protein_id:ENSMUSP00000112952
translation:

MTDMAGLMERLERAVIRLEQLSAGLDGPPRGCGEVNGVNGGVAPSVEAFDKLINSMVAEF
LKNSRVLAGDVETHAEMVHGAFQAQRAFLLMVSQYQQPQEGPVASTASAFSILSSGPGLP
PPPPPPPPPGPPPPFENEDKKEEPSPSRSALFAQLNQGEAITKGLRHVTDDKKTYKNPSL
RAQGQIRSPTKTHTPSPTSPKSNSPQKHTPVLELEGKKWRVEYQEDRNDLVISETELKQV
AYIFKCDKSTLQIKGKVNSITVDNCKKFGLVFDHVVGIVEVINSKDIQIQVMGRVPTISI
NKTEGCHLYLSEDALDCEIVSAKSSEMNVLVPQDDDYREFPIPEQFKTIWDGSKLVTEPA
EIMA

Chromosome

Length
Position(start - end)

122,947
46,525,416 - 46,648,364

Orient to Chromosome

plus

Link

Location : (13:46525416-46648364)
/

Detail Map

name	Cap2 (ENSMUSG00000021373)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cap2 note : CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:MGI Symbol;Acc:MGI:1914502]

name	Gm24915 (ENSMUSG00000087913)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm24915 note : predicted gene, 24915 [Source:MGI Symbol;Acc:MGI:5454692]

name	Cap2 (ENSMUSG00000021373)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021802

name	Cap2 (ENSMUSG00000021373)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119341

name	Cap2 (ENSMUSG00000021373) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26484.1 Uniprot/SWISSPROT:Q9CYT6 RefSeq_peptide:NP_080332 RefSeq_mRNA:NM_026056.4 RefSeq_peptide_predicted:XP_006517009.1 Vega_transcript:Cap2-001 Vega_transcript:OTTMUST00000072619 UCSC:uc007qhf.2 Fantom:2310079P22 Fantom:2810452G09 Fantom:7630403A08 Fantom:9530066E11 EMBL:AK010235 EMBL:AK013331 EMBL:AK033071 EMBL:AK035556 EMBL:BC050752 EMBL:BC057937 GO:GO:0000902 GO:GO:0003779 GO:GO:0005515 GO:GO:0005886 GO:GO:0007010 GO:GO:0097481 MGI_trans_name:Cap2-001 Vega_translation:214408 Vega_translation:OTTMUSP00000037423 goslim_goa:GO:0000902 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0007010 goslim_goa:GO:0008092 goslim_goa:GO:0008150 goslim_goa:GO:0048856 protein_id:AAH50752.2 protein_id:AAH57937.1 protein_id:BAB26786.1 protein_id:BAB28795.1 protein_id:BAC28143.1 protein_id:BAC29104.1 OTTP:OTTMUSP00000037423 OTTT:OTTMUST00000072619 Reactome:R-MMU-1266738 Reactome:R-MMU-376176 Reactome:R-MMU-422475 Reactome:R-MMU-428890 UniParc:UPI0000021BB2
definition	note : transcript_id=ENSMUST00000021802 protein_id : ENSMUSP00000021802 translation : MTDMAGLMERLERAVIRLEQLSAGLDGPPRGCGEVNGVNGGVAPSVEAFDKLINSMVAEFLKNSRVLAGDVETHAEMVHGAFQAQRAFLLMVSQYQQPQENEVAVLLKPISEKIQEIQTFRERNRGSNMFNHLSAVSESIAALGWIAVSPKPGPYVKEMNDAATFYTNRVLKDYKHSDLRHVDWVRSYLNIWSELQAYIREHHTTGLTWSKTGPVASTASAFSILSSGPGLPPPPPPPPPPGPPPPFENEDKKEEPSPSRSALFAQLNQGEAITKGLRHVTDDKKTYKNPSLRAQGQIRSPTKTHTPSPTSPKSNSPQKHTPVLELEGKKWRVEYQEDRNDLVISETELKQVAYIFKCDKSTLQIKGKVNSITVDNCKKFGLVFDHVVGIVEVINSKDIQIQVMGRVPTISINKTEGCHLYLSEDALDCEIVSAKSSEMNVLVPQDDDYREFPIPEQFKTIWDGSKLVTEPAEIMA

name	Cap2 (ENSMUSG00000021373) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cap2-002 Vega_transcript:OTTMUST00000072620 Uniprot/SPTREMBL:D3YTR7 UCSC:uc007qhg.2 EMBL:AC124598 EMBL:AC138329 GO:GO:0000902 GO:GO:0003779 GO:GO:0007010 GO:GO:0097481 MGI_trans_name:Cap2-002 Vega_translation:214409 Vega_translation:OTTMUSP00000037424 goslim_goa:GO:0000902 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0007010 goslim_goa:GO:0008092 goslim_goa:GO:0008150 goslim_goa:GO:0048856 OTTP:OTTMUSP00000037424 OTTT:OTTMUST00000072620 UniParc:UPI0001611548
definition	note : transcript_id=ENSMUST00000119341 protein_id : ENSMUSP00000112952 translation : MTDMAGLMERLERAVIRLEQLSAGLDGPPRGCGEVNGVNGGVAPSVEAFDKLINSMVAEFLKNSRVLAGDVETHAEMVHGAFQAQRAFLLMVSQYQQPQEGPVASTASAFSILSSGPGLPPPPPPPPPPGPPPPFENEDKKEEPSPSRSALFAQLNQGEAITKGLRHVTDDKKTYKNPSLRAQGQIRSPTKTHTPSPTSPKSNSPQKHTPVLELEGKKWRVEYQEDRNDLVISETELKQVAYIFKCDKSTLQIKGKVNSITVDNCKKFGLVFDHVVGIVEVINSKDIQIQVMGRVPTISINKTEGCHLYLSEDALDCEIVSAKSSEMNVLVPQDDDYREFPIPEQFKTIWDGSKLVTEPAEIMA

name
type	STS
link
xref	UniSTS_NUM:126997 UniSTS:D13Mit181
definition	note : map_weight=1 standard_name : D13Mit181

name
type	STS
link
xref	UniSTS_NUM:180526 UniSTS:AV045235 WI_MRC-RH:500312
definition	note : map_weight=1 standard_name : AV045235

name
type	misc_feature
link
xref
definition	note : contig AC138329.4 1..190516(-1)

name
type	misc_feature
link
xref
definition	note : contig AC124598.5 56959..220624(1)

name	Cap2 (ENSMUSG00000021373)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000072621 Vega_transcript:OTTMUST00000072621 MGI_trans_name:Cap2-003 OTTT:OTTMUST00000072621
definition	note : processed_transcript note : transcript_id=ENSMUST00000126687

name	Gm24915 (ENSMUSG00000087913)
type	misc_RNA
link	VEGA Ensembl MGI
xref	MGI_trans_name:Gm24915-201
definition	note : rRNA note : transcript_id=ENSMUST00000157288

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cap2 (ENSMUSG00000021373)
Transcript ID	ENSMUST00000119341

Reports
substitution
cSNPs	2
Insertion	115
Deletion	160
SNPs	-1kb 46497265(c.-28151C>T), 46497297(c.-28119C>T), 46497430(c.-27986A>C), 46497439(c.-27977T>C), 46497461(c.-27955C>G), 46497472(c.-27944A>G), 46497674(c.-27742G>A), 46497704(c.-27712A>G), 46497721(c.-27695T>C), 46498131(c.-27285G>A), 46498182(c.-27234G>A), 46498186(c.-27230C>T), 46498378(c.-27038A>G), 46498386(c.-27030T>C), 46498506(c.-26910T>C), 46498519(c.-26897C>T), 46498553(c.-26863G>A), 46498569(c.-26847A>C), 46498651(c.-26765C>T), 46498778(c.-26638G>A), 46498829(c.-26587C>A), 46498903(c.-26513C>T), 46498956(c.-26460T>C), 46499014(c.-26402C>A), 46499076(c.-26340C>T), 46499604(c.-25812C>A), 46499642(c.-25774G>A), 46499866(c.-25550T>A), 46499932(c.-25484A>G), 46499946(c.-25470A>G), 46500126(c.-25290G>C), 46500128(c.-25288C>A), 46500157(c.-25259T>G), 46500189(c.-25227G>A), 46500262(c.-25154G>A), 46500266(c.-25150G>A), 46500268(c.-25148G>A), 46500290(c.-25126C>T), 46500301(c.-25115G>A), 46500437(c.-24979G>A), 46500447(c.-24969A>C), 46500521(c.-24895C>A), 46500522(c.-24894A>C), 46500807(c.-24609T>C), 46500828(c.-24588T>C), 46500892(c.-24524C>A), 46501267(c.-24149T>G), 46501299(c.-24117A>C), 46501359(c.-24057G>A), 46501502(c.-23914A>C), 46501503(c.-23913G>C), 46501774(c.-23642G>A), 46501846(c.-23570C>A), 46501888(c.-23528C>T), 46501972(c.-23444T>C), 46502064(c.-23352T>C), 5'UTR CDS 46530999(c.144T>C), 46560578(c.297A>G), 3'UTR 46502170(c.-43C>T), 46502199(c.-14A>G), 46648374(c.10A>G), 46648822(c.458G>A), 46648827(c.463C>T), 46648963(c.599G>A), 46649060(c.696T>G), 46649097(c.733G>A), 46649134(c.770G>C), 46649160(c.796T>A), 46649190(c.826A>G), 46649191(c.827C>A), 46649250(c.886A>T), 46649259(c.895G>C), 46649269(c.905G>T), 46649298(c.934G>A), 46649320(c.956A>G), 46649454(c.1090C>T), 46649465(c.1101A>G), 46649504(c.1140C>A), 46649567(c.1203G>A), 46649612(c.1248T>C), INTRON 46502259(c.-2+48A>G), 46502448(c.-2+237T>C), 46502479(c.-2+268T>G), 46502488(c.-2+277C>A), 46502652(c.-2+441T>G), 46502669(c.-2+458C>T), 46502835(c.-2+624G>C), 46503294(c.-2+1083G>A), 46503336(c.-2+1125A>G), 46503426(c.-2+1215C>T), 46503439(c.-2+1228C>T), 46503586(c.-2+1375G>A), 46503630(c.-2+1419G>A), 46503725(c.-2+1514C>T), 46503735(c.-2+1524A>T), 46503843(c.-2+1632G>A), 46503852(c.-2+1641G>A), 46503853(c.-2+1642T>A), 46503882(c.-2+1671G>T), 46503987(c.-2+1776A>G), 46504221(c.-2+2010A>G), 46504273(c.-2+2062A>G), 46504320(c.-2+2109A>G), 46504627(c.-2+2416T>C), 46504711(c.-2+2500T>C), 46504872(c.-2+2661C>T), 46505486(c.-2+3275T>C), 46505623(c.-2+3412G>A), 46505838(c.-2+3627G>A), 46505844(c.-2+3633T>C), 46505878(c.-2+3667G>T), 46505946(c.-2+3735A>G), 46506003(c.-2+3792C>G), 46506006(c.-2+3795G>T), 46506082(c.-2+3871C>T), 46506118(c.-2+3907A>G), 46506169(c.-2+3958A>G), 46506230(c.-2+4019A>T), 46506342(c.-2+4131G>A), 46506407(c.-2+4196T>C), 46506492(c.-2+4281C>T), 46506495(c.-2+4284C>T), 46506538(c.-2+4327C>T), 46506549(c.-2+4338T>C), 46506555(c.-2+4344A>G), 46506679(c.-2+4468A>G), 46506687(c.-2+4476G>T), 46506767(c.-2+4556A>G), 46506873(c.-2+4662C>G), 46506904(c.-2+4693C>G), 46506941(c.-2+4730T>C), 46506948(c.-2+4737C>T), 46506964(c.-2+4753G>A), 46507062(c.-2+4851T>C), 46507538(c.-2+5327T>C), 46507540(c.-2+5329C>T), 46507720(c.-2+5509A>T), 46507818(c.-2+5607A>C), 46507824(c.-2+5613A>T), 46507827(c.-2+5616G>C), 46507853(c.-2+5642G>T), 46507857(c.-2+5646G>T), 46507896(c.-2+5685G>T), 46507909(c.-2+5698G>A), 46507973(c.-2+5762G>C), 46507998(c.-2+5787C>T), 46508041(c.-2+5830C>A), 46508105(c.-2+5894T>C), 46508126(c.-2+5915C>T), 46508183(c.-2+5972C>T), 46508494(c.-2+6283T>C), 46508509(c.-2+6298C>T), 46508516(c.-2+6305T>A), 46508565(c.-2+6354T>C), 46508602(c.-2+6391G>T), 46508634(c.-2+6423A>G), 46508659(c.-2+6448T>A), 46508682(c.-2+6471G>A), 46508693(c.-2+6482G>A), 46508834(c.-2+6623A>G), 46508864(c.-2+6653A>G), 46508870(c.-2+6659G>A), 46508883(c.-2+6672C>T), 46508912(c.-2+6701A>G), 46508922(c.-2+6711G>T), 46508959(c.-2+6748G>A), 46509077(c.-2+6866A>T), 46509197(c.-2+6986C>A), 46509208(c.-2+6997G>C), 46509209(c.-2+6998G>C), 46509233(c.-2+7022T>A), 46509285(c.-2+7074G>A), 46509296(c.-2+7085G>T), 46509348(c.-2+7137A>G), 46509361(c.-2+7150A>T), 46509457(c.-2+7246T>C), 46509615(c.-2+7404A>G), 46509669(c.-2+7458T>C), 46509757(c.-2+7546T>C), 46509796(c.-2+7585A>G), 46510079(c.-2+7868C>T), 46510090(c.-2+7879A>T), 46510160(c.-2+7949A>G), 46510379(c.-2+8168G>C), 46510395(c.-2+8184A>G), 46510414(c.-2+8203T>C), 46510553(c.-2+8342C>A), 46510626(c.-2+8415C>T), 46510819(c.-2+8608T>C), 46510873(c.-2+8662G>T), 46510975(c.-2+8764G>A), 46511097(c.-2+8886T>C), 46511372(c.-2+9161G>A), 46512115(c.-2+9904A>T), 46512314(c.-2+10103T>C), 46512316(c.-2+10105T>C), 46512346(c.-2+10135T>G), 46512347(c.-2+10136C>T), 46512582(c.-2+10371G>A), 46512599(c.-2+10388G>A), 46513302(c.-2+11091T>C), 46513410(c.-2+11199T>C), 46513447(c.-2+11236A>G), 46513618(c.-2+11407A>G), 46513639(c.-2+11428C>T), 46513684(c.-2+11473A>G), 46513688(c.-2+11477C>T), 46513754(c.-2+11543T>C), 46513777(c.-2+11566A>G), 46513800(c.-2+11589T>C), 46513813(c.-2+11602G>A), 46513814(c.-1-11601G>A), 46514059(c.-1-11356A>G), 46514072(c.-1-11343A>T), 46514082(c.-1-11333A>T), 46514269(c.-1-11146C>T), 46514316(c.-1-11099T>A), 46514441(c.-1-10974C>T), 46514527(c.-1-10888T>G), 46514529(c.-1-10886A>T), 46514558(c.-1-10857G>T), 46514593(c.-1-10822T>G), 46514606(c.-1-10809G>A), 46514629(c.-1-10786C>A), 46514670(c.-1-10745T>C), 46514742(c.-1-10673A>G), 46514768(c.-1-10647A>G), 46514837(c.-1-10578T>C), 46514874(c.-1-10541C>T), 46514891(c.-1-10524G>T), 46514921(c.-1-10494A>G), 46514934(c.-1-10481G>A), 46514953(c.-1-10462A>G), 46515002(c.-1-10413A>G), 46515021(c.-1-10394T>C), 46515024(c.-1-10391A>G), 46515035(c.-1-10380A>G), 46515184(c.-1-10231C>T), 46515187(c.-1-10228T>C), 46515197(c.-1-10218C>T), 46515259(c.-1-10156A>G), 46515261(c.-1-10154T>C), 46515417(c.-1-9998T>C), 46515497(c.-1-9918T>C), 46515579(c.-1-9836C>T), 46515627(c.-1-9788T>A), 46515845(c.-1-9570C>T), 46515936(c.-1-9479A>G), 46515940(c.-1-9475T>A), 46515971(c.-1-9444C>T), 46516076(c.-1-9339C>T), 46516214(c.-1-9201C>G), 46516252(c.-1-9163T>A), 46516267(c.-1-9148T>G), 46516312(c.-1-9103A>G), 46516326(c.-1-9089T>G), 46516386(c.-1-9029A>G), 46517171(c.-1-8244T>C), 46517263(c.-1-8152C>T), 46517265(c.-1-8150A>C), 46517290(c.-1-8125A>G), 46517664(c.-1-7751A>G), 46517671(c.-1-7744C>T), 46518331(c.-1-7084G>A), 46518375(c.-1-7040G>A), 46518579(c.-1-6836G>A), 46519617(c.-1-5798C>T), 46519745(c.-1-5670A>C), 46519939(c.-1-5476G>A), 46520187(c.-1-5228C>A), 46520304(c.-1-5111A>G), 46520330(c.-1-5085T>C), 46520365(c.-1-5050A>G), 46520557(c.-1-4858A>G), 46520586(c.-1-4829T>C), 46520645(c.-1-4770T>G), 46520688(c.-1-4727C>T), 46520778(c.-1-4637C>T), 46520788(c.-1-4627G>A), 46520895(c.-1-4520A>G), 46521092(c.-1-4323G>A), 46521155(c.-1-4260G>A), 46521160(c.-1-4255G>A), 46521252(c.-1-4163C>G), 46521261(c.-1-4154A>G), 46521273(c.-1-4142T>A), 46521349(c.-1-4066A>C), 46521366(c.-1-4049G>A), 46521380(c.-1-4035A>G), 46521406(c.-1-4009C>T), 46521428(c.-1-3987T>A), 46521467(c.-1-3948C>T), 46521510(c.-1-3905A>C), 46521576(c.-1-3839C>T), 46521621(c.-1-3794A>G), 46521645(c.-1-3770C>G), 46521649(c.-1-3766C>T), 46521689(c.-1-3726A>G), 46521719(c.-1-3696C>T), 46521771(c.-1-3644A>C), 46521776(c.-1-3639G>A), 46521777(c.-1-3638T>C), 46521880(c.-1-3535G>A), 46521896(c.-1-3519A>G), 46521904(c.-1-3511G>C), 46521914(c.-1-3501C>T), 46522023(c.-1-3392C>T), 46522029(c.-1-3386T>C), 46522030(c.-1-3385G>A), 46522076(c.-1-3339T>C), 46522092(c.-1-3323G>C), 46522112(c.-1-3303A>C), 46522162(c.-1-3253G>A), 46522226(c.-1-3189G>A), 46522269(c.-1-3146A>G), 46522278(c.-1-3137G>T), 46522282(c.-1-3133G>T), 46522294(c.-1-3121T>G), 46522331(c.-1-3084T>G), 46522378(c.-1-3037C>T), 46522505(c.-1-2910A>G), 46522545(c.-1-2870T>G), 46522600(c.-1-2815C>A), 46522642(c.-1-2773G>C), 46522648(c.-1-2767C>T), 46522656(c.-1-2759C>T), 46522661(c.-1-2754C>T), 46522679(c.-1-2736G>A), 46522729(c.-1-2686T>A), 46522915(c.-1-2500C>T), 46523104(c.-1-2311A>G), 46523168(c.-1-2247C>T), 46523210(c.-1-2205T>G), 46523368(c.-1-2047T>C), 46523403(c.-1-2012A>G), 46523447(c.-1-1968A>G), 46523565(c.-1-1850T>A), 46523587(c.-1-1828G>T), 46523597(c.-1-1818C>T), 46523630(c.-1-1785C>A), 46523635(c.-1-1780A>T), 46523643(c.-1-1772T>C), 46523707(c.-1-1708A>C), 46523744(c.-1-1671C>T), 46523893(c.-1-1522T>G), 46523902(c.-1-1513C>A), 46524224(c.-1-1191G>A), 46524556(c.-1-859A>G), 46524685(c.-1-730G>A), 46524846(c.-1-569T>C), 46525041(c.-1-374A>G), 46525648(c.121+112T>C), 46525768(c.121+232T>C), 46525800(c.121+264A>G), 46525801(c.121+265C>A), 46525878(c.121+342G>A), 46525938(c.121+402A>G), 46525988(c.121+452T>G), 46526129(c.121+593G>A), 46526156(c.121+620G>A), 46526161(c.121+625A>T), 46526168(c.121+632T>G), 46526183(c.121+647C>T), 46526258(c.121+722A>T), 46526264(c.121+728A>G), 46526466(c.121+930T>C), 46527575(c.121+2039T>C), 46527598(c.121+2062C>T), 46527633(c.121+2097G>A), 46527662(c.121+2126C>T), 46527902(c.121+2366A>C), 46527983(c.121+2447G>A), 46528012(c.121+2476G>A), 46528061(c.121+2525A>G), 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46618891(c.301-16730T>C), 46619046(c.301-16575C>T), 46619088(c.301-16533A>G), 46619119(c.301-16502C>T), 46619168(c.301-16453C>T), 46619438(c.301-16183A>G), 46619638(c.301-15983A>G), 46619640(c.301-15981A>G), 46619705(c.301-15916T>A), 46619741(c.301-15880T>C), 46619756(c.301-15865G>A), 46619849(c.301-15772T>A), 46619951(c.301-15670G>A), 46620057(c.301-15564T>G), 46620128(c.301-15493T>C), 46620133(c.301-15488T>C), 46620190(c.301-15431C>G), 46620257(c.301-15364T>C), 46620280(c.301-15341A>G), 46620313(c.301-15308T>C), 46620316(c.301-15305T>G), 46620333(c.301-15288A>C), 46620481(c.301-15140A>G), 46620752(c.301-14869C>G), 46620797(c.301-14824A>G), 46620863(c.301-14758T>C), 46620864(c.301-14757G>A), 46620958(c.301-14663C>T), 46620989(c.301-14632G>A), 46621047(c.301-14574G>A), 46621052(c.301-14569A>G), 46621071(c.301-14550C>T), 46621091(c.301-14530T>C), 46621155(c.301-14466G>T), 46621313(c.301-14308C>T), 46621514(c.301-14107G>T), 46621539(c.301-14082T>C), 46621673(c.301-13948A>G), 46621973(c.301-13648A>G), 46622231(c.301-13390T>G), 46622255(c.301-13366T>G), 46622257(c.301-13364G>A), 46622453(c.301-13168G>A), 46622483(c.301-13138G>A), 46622772(c.301-12849A>G), 46622774(c.301-12847A>G), 46622781(c.301-12840G>A), 46622848(c.301-12773A>G), 46622849(c.301-12772C>T), 46623115(c.301-12506A>G), 46623153(c.301-12468A>G), 46623251(c.301-12370C>T), 46623412(c.301-12209T>C), 46623439(c.301-12182G>A), 46623844(c.301-11777A>G), 46623878(c.301-11743G>A), 46623949(c.301-11672A>G), 46624049(c.301-11572A>C), 46624339(c.301-11282T>C), 46624360(c.301-11261A>G), 46624624(c.301-10997G>A), 46624633(c.301-10988G>A), 46624788(c.301-10833A>G), 46624794(c.301-10827G>A), 46624845(c.301-10776A>G), 46624881(c.301-10740C>A), 46625030(c.301-10591C>A), 46625059(c.301-10562A>T), 46625103(c.301-10518G>A), 46625199(c.301-10422G>C), 46625227(c.301-10394A>G), 46625319(c.301-10302G>A), 46625610(c.301-10011G>A), 46625648(c.301-9973G>A), 46625759(c.301-9862G>A), 46626171(c.301-9450G>A), 46626284(c.301-9337A>G), 46626285(c.301-9336A>G), 46626330(c.301-9291T>C), 46626372(c.301-9249T>C), 46626456(c.301-9165T>G), 46626460(c.301-9161G>A), 46626467(c.301-9154G>A), 46626470(c.301-9151T>A), 46626473(c.301-9148C>T), 46626482(c.301-9139C>T), 46626509(c.301-9112C>T), 46626513(c.301-9108A>T), 46626516(c.301-9105T>G), 46626517(c.301-9104A>G), 46626543(c.301-9078C>T), 46627041(c.301-8580C>T), 46627051(c.301-8570A>C), 46627057(c.301-8564T>C), 46627058(c.301-8563G>A), 46627093(c.301-8528G>T), 46627139(c.301-8482T>C), 46627340(c.301-8281A>G), 46627357(c.301-8264A>G), 46627412(c.301-8209C>T), 46627422(c.301-8199G>A), 46627433(c.301-8188A>G), 46627635(c.301-7986C>G), 46627679(c.301-7942G>T), 46627733(c.301-7888C>A), 46628121(c.301-7500A>G), 46628231(c.301-7390C>G), 46628254(c.301-7367A>G), 46628362(c.301-7259A>G), 46628454(c.301-7167C>T), 46628501(c.301-7120G>C), 46628527(c.301-7094C>T), 46628531(c.301-7090G>A), 46628597(c.301-7024G>A), 46628601(c.301-7020A>G), 46628603(c.301-7018G>A), 46628730(c.301-6891C>T), 46628987(c.301-6634T>C), 46629015(c.301-6606A>G), 46629114(c.301-6507A>G), 46629323(c.301-6298G>T), 46629324(c.301-6297C>T), 46629378(c.301-6243G>A), 46629414(c.301-6207A>G), 46629711(c.301-5910C>T), 46629834(c.301-5787C>T), 46629934(c.301-5687G>A), 46629964(c.301-5657T>C), 46630082(c.301-5539C>T), 46630182(c.301-5439T>C), 46630293(c.301-5328A>G), 46630301(c.301-5320C>T), 46630395(c.301-5226G>A), 46630415(c.301-5206A>C), 46630421(c.301-5200A>C), 46630423(c.301-5198G>A), 46630433(c.301-5188G>A), 46630436(c.301-5185C>G), 46630465(c.301-5156G>A), 46630591(c.301-5030T>C), 46630643(c.301-4978G>A), 46630652(c.301-4969T>G), 46631449(c.301-4172T>A), 46631502(c.301-4119A>G), 46631514(c.301-4107T>G), 46631966(c.301-3655C>T), 46632008(c.301-3613T>C), 46632114(c.301-3507G>A), 46632138(c.301-3483C>A), 46632147(c.301-3474C>T), 46632314(c.301-3307A>G), 46632349(c.301-3272A>G), 46632361(c.301-3260A>G), 46632377(c.301-3244T>C), 46632401(c.301-3220T>C), 46632654(c.301-2967T>C), 46632902(c.301-2719A>G), 46633492(c.301-2129C>G), 46633544(c.301-2077G>C), 46633574(c.301-2047C>T), 46633597(c.301-2024A>C), 46633905(c.301-1716G>A), 46634175(c.301-1446A>T), 46634321(c.301-1300A>G), 46634330(c.301-1291T>A), 46634348(c.301-1273T>C), 46634491(c.301-1130A>G), 46634618(c.301-1003C>T), 46634619(c.301-1002A>G), 46634650(c.301-971C>T), 46634835(c.301-786T>C), 46634946(c.301-675A>G), 46634999(c.301-622G>T), 46635004(c.301-617G>C), 46635038(c.301-583A>C), 46635073(c.301-548C>A), 46635090(c.301-531T>C), 46635179(c.301-442A>G), 46635233(c.301-388G>A), 46635305(c.301-316G>A), 46635354(c.301-267T>C), 46635397(c.301-224T>C), 46635449(c.301-172A>G), 46635490(c.301-131G>C), 46635575(c.301-46C>T), 46635834(c.490+24C>T), 46635835(c.490+25A>G), 46635958(c.490+148C>T), 46636051(c.490+241G>A), 46636075(c.490+265C>T), 46636261(c.490+451T>C), 46636550(c.490+740C>T), 46636562(c.490+752A>G), 46636755(c.490+945A>G), 46636938(c.491-911T>C), 46636994(c.491-855G>C), 46637185(c.491-664G>A), 46637273(c.491-576C>G), 46637293(c.491-556C>T), 46637319(c.491-530G>A), 46637426(c.491-423T>A), 46637501(c.491-348C>T), 46638052(c.663+31C>G), 46638180(c.663+159C>T), 46639356(c.664-467C>T), 46641158(c.870+1036A>G), 46641711(c.870+1589C>T), 46641952(c.870+1830A>G), 46642247(c.870+2125G>A), 46642575(c.870+2453T>C), 46642866(c.870+2744A>G), 46642941(c.870+2819T>C), 46644379(c.871-2147C>A), 46645234(c.871-1292G>A), 46645416(c.871-1110T>C), 46645742(c.871-784G>T), 46647121(c.1011+455G>A), 46647174(c.1011+508A>G), 46647677(c.1012-604A>C), 46647689(c.1012-592T>C), 46647716(c.1012-565T>C), 46647896(c.1012-385C>T), 46647996(c.1012-285G>A), 46648104(c.1012-177C>A), 46648204(c.1012-77T>C), 46648214(c.1012-67A>C), 46648228(c.1012-53T>C), +1kb 46649691(c.1327G>A), 46649698(c.1334A>G), 46649755(c.1391C>G), 46649890(c.1526A>G), 46649896(c.1532A>G), 46650108(c.1744T>C), 46650141(c.1777A>G), 46650173(c.1809T>C), 46650527(c.2163T>C), 46650613(c.2249A>G), 46650751(c.2387G>C), 46650876(c.2512A>G), 46650978(c.2614C>T), 46651465(c.3101A>C), 46651675(c.3311A>C), 46651870(c.3506A>G), 46652081(c.3717C>T), 46652765(c.4401C>A), 46652815(c.4451T>C), 46653034(c.4670C>A), 46653093(c.4729C>T), 46653602(c.5238C>A), 46653681(c.5317G>A), 46653753(c.5389C>T), 46654467(c.6103A>T), 46654594(c.6230G>A),
Insertions	-1kb 46497988 (c.-27428_-27427insAA), 46499130 (c.-26286_-26285insTAG), 46499878 (c.-25538_-25537insA), 5'UTR CDS 3'UTR 46648696 (c.343dupA), 46648866 (c.505_506insAACA), INTRON 46503149 (c.-2+938_-2+939insCGCGA), 46505309 (c.-2+3103_-2+3104dupAA), 46505762 (c.-2+3557_-2+3558insCAGGCAGTG), 46507927 (c.-2+5718_-2+5719dupCC), 46512673 (c.-2+10463_-2+10467dupCACCC), 46512682 (c.-2+10471_-2+10472insCCCCACCC), 46514309 (c.-1-11105dupC), 46515828 (c.-1-9587_-1-9586insC), 46516695 (c.-1-8723_-1-8718dupACACAC), 46518224 (c.-1-7184dupT), 46518807 (c.-1-6608dupA), 46519422 (c.-1-5993_-1-5992insAG), 46521188 (c.-1-4219dupA), 46521192 (c.-1-4219dupA), 46521807 (c.-1-3608_-1-3607insT), 46523736 (c.-1-1676_-1-1675insCTCC), 46527780 (c.121+2245_121+2249dupGATGC), 46528075 (c.121+2539_121+2540insG), 46528412 (c.122-2563dupA), 46528777 (c.122-2195dupC), 46529359 (c.122-1618_122-1617insA), 46529479 (c.122-1498_122-1497insTTCC), 46530608 (c.122-362_122-361dupCC), 46530615 (c.122-364_122-361dupCCCC), 46532979 (c.222+1901_222+1902dupGA), 46533035 (c.222+1958_222+1959insC), 46533037 (c.222+1960_222+1961insC), 46534313 (c.222+3243dupG), 46537189 (c.222+6112_222+6113insCAC), 46537677 (c.222+6603_222+6606dupAAAA), 46538673 (c.222+7596dupG), 46540630 (c.222+9559dupA), 46541435 (c.222+10361dupT), 46541438 (c.222+10361dupT), 46541591 (c.222+10514_222+10515insA), 46542343 (c.222+11266dupG), 46542360 (c.222+11293_222+11297dupCAAAA), 46542375 (c.222+11298_222+11299insCAAAA), 46542731 (c.222+11654_222+11655insCTT), 46543358 (c.222+12287dupA), 46544029 (c.222+12951_222+12952dupGA), 46544098 (c.222+13021_222+13022insTACC), 46544136 (c.222+13068_222+13069dupAC), 46544148 (c.222+13072_222+13073insCA), 46544336 (c.222+13259_222+13260insAGATA), 46545904 (c.223-14600dupT), 46545915 (c.223-14588_223-14587insGGGG), 46547267 (c.223-13236_223-13235insGG), 46549973 (c.223-10529_223-10528insAGCA), 46550630 (c.223-9873dupT), 46551676 (c.223-8827dupA), 46553634 (c.223-6870_223-6869insCTTC), 46557034 (c.223-3460dupA), 46558433 (c.223-2071_223-2070insTG), 46558873 (c.223-1631_223-1630insGCAC), 46558923 (c.223-1582_223-1581dupCA), 46559043 (c.223-1461dupT), 46559368 (c.223-1130_223-1128dupGGG), 46559566 (c.223-934dupG), 46560277 (c.223-227_223-226insCA), 46561823 (c.300+1244dupT), 46563750 (c.300+3169_300+3170insAAAA), 46564417 (c.300+3832_300+3836dupTTTTT), 46564732 (c.300+4154_300+4155insCTTCCT), 46566435 (c.300+5865_300+5866dupCA), 46568154 (c.300+7576_300+7577insCGGGGTG), 46569215 (c.300+8644dupA), 46571273 (c.300+10696dupA), 46583716 (c.300+23153_300+23157dupTTCTT), 46585654 (c.300+25073_300+25074insC), 46589056 (c.300+28479_300+28482dupCAGC), 46589703 (c.300+29122_300+29123insTT), 46592775 (c.300+32198_300+32199dupTT), 46593035 (c.300+32460dupA), 46597550 (c.300+36967_300+36969dupAAA), 46599522 (c.301-36099dupA), 46600523 (c.301-35098_301-35097insG), 46601387 (c.301-34234dupG), 46601389 (c.301-34232_301-34231insG), 46601820 (c.301-33797_301-33793dupGGTTT), 46601827 (c.301-33794_301-33793insGGTTT), 46603580 (c.301-32035dupT), 46605627 (c.301-29992_301-29991insGCC), 46609495 (c.301-26125_301-26124dupCC), 46609500 (c.301-26119dupC), 46609773 (c.301-25846_301-25845insCACA), 46612450 (c.301-23171_301-23170insC), 46615928 (c.301-19688dupG), 46617693 (c.301-17928_301-17927insTTTTA), 46617711 (c.301-17910_301-17909insT), 46618403 (c.301-17218_301-17217insGGAC), 46618473 (c.301-17148_301-17147insA), 46618475 (c.301-17145dupA), 46619382 (c.301-16237_301-16235dupTCT), 46621178 (c.301-14444_301-14443dupTT), 46621184 (c.301-14437_301-14436insTT), 46622781 (c.301-12839_301-12838dupGC), 46623115 (c.301-12504_301-12503insGGGGGGGGG), 46623844 (c.301-11777_301-11776insGG), 46627688 (c.301-7932_301-7931insTT), 46628923 (c.301-6697_301-6696insAAA), 46629164 (c.301-6457_301-6456insG), 46630274 (c.301-5345_301-5344insCCGGG), 46630666 (c.301-4951_301-4950insGAAAAAA), 46639669 (c.664-154_664-153insC), 46641964 (c.870+1845_870+1846insGCGGAG), 46646297 (c.871-229_871-228dupAC), +1kb 46651543 (c.3179_3180insT), 46653293 (c.4929_4930insAA), 46654354 (c.5990_*5991insAC),
Deletions	-1kb 46497239 (c.-28176_-28175delTC), 46497497 (c.-27918_-27917delAA), 46497783 (c.-27632_-27625delTAGAATAG), 46499081 (c.-26334_-26331delAAAT), 46499093 (c.-26322_-26319delAAAT), 46500541 (c.-24874delT), 46500545 (c.-24870delT), 46500628 (c.-24787delC), 5'UTR CDS 3'UTR 46649529 (c.1167_1168delAA), INTRON 46502236 (c.-2+37_-2+39delGGG), 46502246 (c.-2+36_-2+39delGGGG), 46503107 (c.-2+897delA), 46503686 (c.-2+1485_-2+1489delTTTTT), 46503855 (c.-2+1645delT), 46503918 (c.-2+1708_-2+1710delAAA), 46506003 (c.-2+3793delA), 46507704 (c.-2+5494_-2+5498delGCTTG), 46509170 (c.-2+6966delT), 46511826 (c.-2+9631delT), 46512737 (c.-2+10527_-2+10530delCTTC), 46513206 (c.-2+11004_-2+11006delTTT), 46514893 (c.-1-10520delA), 46516574 (c.-1-8839_-1-8837delTGG), 46517850 (c.-1-7561_-1-7556delGTATGT), 46518662 (c.-1-6745delT), 46520620 (c.-1-4789delA), 46521075 (c.-1-4339_-1-4335delAAAAA), 46521940 (c.-1-3474_-1-3471delGCTA), 46521968 (c.-1-3445_-1-3443delCCA), 46524749 (c.-1-660_-1-654delACACAAT), 46525055 (c.-1-352delT), 46526550 (c.121+1018_121+1023delCTTTTT), 46526572 (c.121+1037_121+1038delTT), 46526993 (c.121+1458delT), 46527303 (c.121+1768delT), 46529402 (c.122-1574_122-1570delTTTTT), 46531191 (c.222+115delG), 46531244 (c.222+168delT), 46531667 (c.222+595_222+596delGT), 46532142 (c.222+1069delG), 46534029 (c.222+2962delA), 46535194 (c.222+4118delA), 46535429 (c.222+4355delA), 46536160 (c.222+5084_222+5087delATCG), 46537965 (c.222+6893delC), 46538126 (c.222+7050_222+7051delAC), 46538146 (c.222+7070delT), 46538156 (c.222+7080delG), 46538484 (c.222+7408_222+7409delTG), 46538906 (c.222+7833delG), 46539588 (c.222+8512delC), 46541481 (c.222+10405_222+10409delGATGG), 46542070 (c.222+10998_222+11001delAGAG), 46542719 (c.222+11643delG), 46544951 (c.222+13875_222+13879delACAAA), 46545084 (c.222+14010delT), 46545606 (c.222+14530_222+14535delAAGACA), 46545681 (c.222+14605_222+14606delGA), 46546932 (c.223-13571_223-13562delCCCTCCACAC), 46546949 (c.223-13554_223-13551delCACA), 46547718 (c.223-12785delA), 46547772 (c.223-12730_223-12724delAATCAAC), 46548677 (c.223-11826delT), 46548812 (c.223-11684_223-11683delTT), 46552085 (c.223-8412delC), 46552284 (c.223-8217delA), 46552507 (c.223-7983_223-7982delAC), 46553487 (c.223-7016_223-7014delTGT), 46554330 (c.223-6170_223-6169delAA), 46554717 (c.223-5786_223-5785delTC), 46555674 (c.223-4821_223-4820delTT), 46556047 (c.223-4450delA), 46556331 (c.223-4163delA), 46557873 (c.223-2626_223-2623delCTAA), 46558061 (c.223-2434delA), 46559085 (c.223-1410_223-1408delAAA), 46559093 (c.223-1410_223-1408delAAA), 46560281 (c.223-222_223-220delAAA), 46560332 (c.223-171delT), 46562262 (c.300+1686delT), 46562769 (c.300+2191_300+2192delTT), 46563542 (c.300+2966_300+2967delTT), 46563593 (c.300+3013_300+3014delGT), 46563827 (c.300+3247_300+3250delTTTT), 46565854 (c.300+5288_300+5292delTTTTT), 46569517 (c.300+8940delT), 46569956 (c.300+9376delT), 46570021 (c.300+9445delC), 46570025 (c.300+9445delC), 46570426 (c.300+9857delA), 46571822 (c.300+11242_300+11249delGAAGAAAA), 46571880 (c.300+11300_300+11301delTA), 46571892 (c.300+11312_300+11314delTAA), 46572380 (c.300+11811delA), 46573542 (c.300+13003_300+13010delGTGTGTGT), 46574929 (c.300+14349_300+14350delGA), 46585240 (c.300+24691_300+24694delGTGT), 46587964 (c.300+27392_300+27397delCAACAA), 46588212 (c.300+27632_300+27637delAGGGTG), 46589248 (c.300+28669_300+28670delCA), 46590411 (c.300+29837delG), 46591296 (c.300+30733_300+30734delAC), 46592336 (c.300+31756delA), 46594196 (c.300+33620delG), 46594510 (c.300+33935delA), 46595301 (c.300+34721_300+34724delTCCA), 46597380 (c.300+36815_300+36818delCACA), 46597568 (c.300+36997_300+37000delAAAA), 46597577 (c.300+36997_300+37001delAAAAT), 46598608 (c.301-37008delG), 46599018 (c.301-36599_301-36596delATGA), 46599615 (c.301-36005delT), 46599723 (c.301-35897_301-35896delAC), 46599904 (c.301-35715_301-35714delCA), 46600245 (c.301-35373_301-35370delGCTA), 46600528 (c.301-35092_301-35091delAG), 46601299 (c.301-34321_301-34320delCA), 46601787 (c.301-33833delG), 46605864 (c.301-29756_301-29752delGAAAA), 46606107 (c.301-29510_301-29507delTTCT), 46606315 (c.301-29297_301-29294delGGGG), 46606779 (c.301-28841delT), 46607947 (c.301-27662_301-27661delGG), 46608663 (c.301-26952_301-26951delGA), 46609139 (c.301-26479_301-26477delAAG), 46609442 (c.301-26178_301-26173delAAAAAA), 46610781 (c.301-24834_301-24833delTT), 46611797 (c.301-23818delA), 46611926 (c.301-23694delT), 46614275 (c.301-21345delA), 46614373 (c.301-21247_301-21245delCAG), 46614514 (c.301-21106_301-21098delGGATTTCTG), 46614954 (c.301-20666delG), 46616492 (c.301-19123delG), 46618450 (c.301-17170_301-17168delAAG), 46619569 (c.301-16051_301-16049delTCC), 46621102 (c.301-14518_301-14513delAGCTGT), 46622296 (c.301-13324_301-13318delAGACAGA), 46626343 (c.301-9277delT), 46626377 (c.301-9243delC), 46626532 (c.301-9087delA), 46628418 (c.301-7199_301-7197delGAA), 46633724 (c.301-1896_301-1892delTTCCT), 46635280 (c.301-334_301-331delTTAC), 46636476 (c.490+675delA), 46637255 (c.491-549_491-544delACACAC), 46638892 (c.663+880_663+886delGGGGGGG), 46640323 (c.870+202_870+204delGTT), 46640864 (c.870+751_870+753delCCC), 46642277 (c.870+2165_870+2166delAA), 46646827 (c.1011+162_1011+171delAAAAAAAAAA), 46646973 (c.1011+310_1011+314delTATTT), +1kb 46649859 (c.1496_1503delCACATCAT), 46649920 (c.1557_1562delCACACA), 46649957 (c.1594_1599delAATAAA), 46650255 (c.1892_1897delTTTTTT), 46650290 (c.1927_1928delTG), 46650329 (c.1966_1968delGTG), 46651581 (c.3218_3219delCC), 46651591 (c.3228_3229delCC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	0
synonymous substitutions	46530999 (p.Ala48Ala), 46560578 (p.Gln99Gln),
non-synonymous substitutions
B6 transcript (ENSMUST00000119341)	MTDMAGLMERLERAVIRLEQLSAGLDGPPRGCGEVNGVNGGVAPSVEAFDKLINSMVAEF LKNSRVLAGDVETHAEMVHGAFQAQRAFLLMVSQYQQPQEGPVASTASAFSILSSGPGLP PPPPPPPPPGPPPPFENEDKKEEPSPSRSALFAQLNQGEAITKGLRHVTDDKKTYKNPSL RAQGQIRSPTKTHTPSPTSPKSNSPQKHTPVLELEGKKWRVEYQEDRNDLVISETELKQV AYIFKCDKSTLQIKGKVNSITVDNCKKFGLVFDHVVGIVEVINSKDIQIQVMGRVPTISI NKTEGCHLYLSEDALDCEIVSAKSSEMNVLVPQDDDYREFPIPEQFKTIWDGSKLVTEPA EIMA*
MSMv4 transcript	MTDMAGLMERLERAVIRLEQLSAGLDGPPRGCGEVNGVNGGVAPSVEAFDKLINSMVAEF LKNSRVLAGDVETHAEMVHGAFQAQRAFLLMVSQYQQPQEGPVASTASAFSILSSGPGLP PPPPPPPPPGPPPPFENEDKKEEPSPSRSALFAQLNQGEAITKGLRHVTDDKKTYKNPSL RAQGQIRSPTKTHTPSPTSPKSNSPQKHTPVLELEGKKWRVEYQEDRNDLVISETELKQV AYIFKCDKSTLQIKGKVNSITVDNCKKFGLVFDHVVGIVEVINSKDIQIQVMGRVPTISI NKTEGCHLYLSEDALDCEIVSAKSSEMNVLVPQDDDYREFPIPEQFKTIWDGSKLVTEPA EIMA*
homology	100.00 (365 / 365)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cap2 (ENSMUSG00000021373)
Transcript ID	ENSMUST00000119341


..........GAGTTGCTGTGGTCATGGTGTCTGTTCTCTGCAATAAAACCCTAAGACAA
CAGGGAACATTGGCTTTACCAGAATCCCCTTTACTACACAATTTTGAGAGTTTGCTTTTT
GAATATCTGTAGGGCCAGGCATAGTGGATCTGGCCATTAATCCCAGCACTCTGGAAGCAG
AGGCCGGAGGATGTCTGTGAGTTCAAGAACAACCTGTTCTACAGCAAGTCCCAGGGCAGC
TAGGACTTTGTAGGGAGACACTTTCTCAAATTTTAAACAAAAGAACATAAGCTATTACAT
TTCTCTCTCCCCCTCCCTTCGTCTGCAGCTTTTCCCCTTGACAATCATTCATTCAGTGAA
GAGCTTTGTGTCCAGTATTCCAGACTCCCATGAAAATCGAAAATCGATCCTCTCTGTCTA
ATTATGCTAACCAGAGAGAAACGCTTCCAGTTTCGTCAGCATAGACCATACATATATAAA
ATAAGGGGCAGTGTCTACAAGTAAAACAGTTGCTGGAGTAGGCCGGCCAAGGATTCTACT
CGTTTCTAAATAATCAGATGACTTTTTAAAGTTTCTGTATATAAGTTACTTGCCCCAGAT
CTACAATCTATCTGAAGAGATACATGCATTTGCTCTCCTTTATCCTTTTCTTTGAGTTGA
AGGATATTCGAGGTGCTCCATTCTCCCTCTCTTTGTGCGGGTCACTATGCAGCCCTACCC
ACCCCCAACCCACTTCAGGGACCGCCAGACCTTTTCAGAGCTCTTTGCAAACCTGCAGGA
GGAGGCGAAGGCATTTCCTGCTTGCACCGGCGATCGCCTCTGCCCTCCTATCTCTCTTCT
CCCACGGCCCATCTGTGCCTCCTCTCTGCTCCCTTCCTTGCCACCCCCGCCCTCGGCTGG
GTGCTCCCGGCCCCTCCCGCGCCCGTCTGTATTTGGAGCTGCCGGAAGCCGCGGGCGACT
CTCCCCGAGAGCAGCGTGACCGACTCGGGCTCCCGTGCAGGGGGGAGGCG
GAGGCAGCACCGGGCCTGCGGGAGGAGGGCGCAAGTGGCCGGAGCTGGCTTTGCATCACCGAAGCCAGGACCTGGGCTCTACAGCAG
GTCAGGCTGGAACGCGGAGGGGGAC..........ATAATCTCCGTCTGTGTCTTTCTAG
AATGACAGACATGGCGGGACTGATGGAGAGGCTGGAACGTGCAGTCATCCGGCTGGAGCAGCTGTCTGCAGGGTTAGACGGACCTCCCAGAGGCTGCGGGGAAGTGAATGGTGTCAATGGAG
GTAGGGCCACCACCTGATGTCATTA..........GTAACCAAGCCGTTCTCTTCCACAG
GTGTGGCACCGTCCGTGGAAGCCTTTGACAAACTGATAAACAGTATGGTGGCCGAGTTCTTAAAGAACAGCCGAGTCCTTGCTGGTGACGTAGAGACTCAC
GTGAGTGCTTCTTGTCCCTCGGGCA..........CTGCTGCCTTCTTTTCTGTCTGCAG
GCAGAAATGGTGCACGGTGCTTTCCAAGCCCAGCGTGCTTTTCTTCTCATGGTCTCGCAGTACCAACAACCCCAGGAG
GTAAGAGCAGCTTGTAATAAACAGG..........AGCTCCCATCTTCTGTCTCCCACAG
GGTCCTGTGGCATCCACAGCGTCAGCGTTTTCCATCCTCTCCTCTGGGCCTGGTCTCCCGCCACCACCTCCACCACCACCTCCTCCTGGGCCACCTCCACCCTTTGAGAATGAGGATAAAAAGGAGGAGCCCTCCCCTTCTCGCTCAGCTTTATTTGCCCAGCTCAATCAAGGAGAAGCCATCACTAAAG
GTAAGAAAACAAATCCTGGAAACTG..........AATTAAAACTGCCCTGCCTTCCTAG
GGCTCCGGCATGTCACAGATGACAAGAAGACATACAAGAATCCCAGCCTGAGGGCTCAAGGACAGATTCGCTCTCCAACCAAAACTCACACGCCGAGCCCCACATCTCCAAAATCGAATTCTCCTCAGAAACATACTCCAGTGTTGGAGCTGGAAGGGAAGAAGTGGAGAGTG
GTAAGTATAATCCTGTGACATGATT..........ATGCCCATGTCTGTTTTACCTTTAG
GAATACCAAGAGGACAGGAATGACCTTGTCATCTCCGAGACCGAGCTGAAACAAGTGGCTTACATTTTCAAATGTGACAAATCCACTCTTCAGATAAAGGGAAAAGTGAACTCCATCACTGTCG
GTAGGCAAAGCTTAGGCTGTGTGCT..........CCAGAGCTTCGTTCTCCTCTTTTAG
ATAACTGCAAGAAGTTTGGCCTGGTGTTTGATCATGTGGTGGGCATTGTGGAAGTGATCAACTCCAAGGACATTCAGATCCAG
GTGAGCAGCCTCTAGGGACCATGCT..........CTTCAGTCCCATTTTTTCCCCTTAG
GTAATGGGGAGAGTACCAACAATCTCCATTAATAAGACAGAAGGATGCCACCTGTACCTCAGTGAAGATGCACTAGACTGTGAGATCGTGAGCGCGAAGTCGTCCGAGATGAATGTCCTGGTCCCTCAGGATGACGATTAT
GTGAGTACCTCCCAAAAGCCTGCCC..........AACTGTCTTTCTCAACTTCTTCCAG
AGAGAATTCCCCATTCCCGAGCAGTTCAAGACAATATGGGATGGCTCCAAGCTGGTCACCGAACCTGCAGAGATCATGGCCTGACATCCAAGAGATAGCCTTCCCTGAGTCTCCTCTAGCGAACAGAAGCAAGCAGCTAATAGGAGCTAGATTTTACCATAGCCCCGACGCCCGTGTCCGTGTCCGAATCCTGCAGTTCTGTGCCATGGAAAACAGTATCTTTTCTGGCAGGCTTTTATGGGCGTTTTGAAATATTTAACATTTGATCATGATTTGTGTGTGATTTTACTTCCACGTGATAACTAGTAAACACGGCAGTTAAAGGGAAAAGAATTCTGTTCCCATCACACCACCAACTCCGTAACTGATAAGGAAAAGCCCTGCCTATTTCTTCCTTTCAGTTTAATTGCTAGTTGAAAAAAAAAAATGAAGCCTTAGAGAACCTATGTATGTTTTTACCTTTTAGACAACTTTAAAATAGTCTTGTGCCCTAAAGAATAAGGCTCTATTTTTTAATTTTTACGTGCTCCCCTTTATCAGCATGGATATCCTGTCAGCATGAATGAATTCTTCAATCCATGCTTTTACACACACATATACACAAAGAGAAAACATCTAAGGAAACACAATATACCCTTTATAGTTACTGAAAAACAAAAGAAATCCTAACTCCATCTTTCTCATGAGTCACTTTAAAAGTTCTAATTTGCCTGCATATCCTAAGACAAAGGGTGGTGGCAGGGAGGGGTGGGGTGTGGTAGGGACTCAGTCCTCAGTTTGTGCTTTGTAATACCTCATGGTCTGGTTTGAAGGATAACTCGGCCTTTGCGTTGCAGTTTTGAAGTCACCCATACTATCAGACAACCCCATACAGGTCTCAAATGCTTATTAGAGATGAGTCCCTTTTCCGATGGCCAGGCTAACCAGTGCTAACCAGCCTCAAAGACAAAAATGCCCAAGAGCCTGACTTTTGCTTCTCGAATCAGTTTTTTGGCTCTGGTTGGGTTTTCTAGTCTTAATAGTACACAGACTTCCAGGCGAGCAACAACACTCTTCGTGTCTCTTCTCTGCACGTGGCCGAGAACTCTGCAGCTTTTTGGGTCCTGTGTAACGAAGCATAGCGCTAAGCTTTTGGAACCAGTGGGAGCATCTAGATTGTGCCTACGAAGACCCTGCTGGCTATCGTTTTTTCAGTTTTCTAATAGCTTCTATATCCATACAGTATTCATATCACTGATGTTTGTGTATCAAAGTTTTGCTATAAAAGTTCTGTCCTTATGAACTATATGGTGGCTTTAGTAAGTATAATTTTTTGAACAGTAAAGTTATACCAAGTAAAACCAAATTGTTTAAAT
ACTGAGATGAATTCTCATTTTGGTTTTGCATTTGTTTTGCCCTGTTTTATCTTTCACTTG
CTGCTTGTTGATTTGTTTGCGGTCAGCCAGAGATACAAAGTGAGACACTATTGGAGGTAG
TTAATGCCGAGCCTGACAACTTGAGTGTGATCTCCAGGAACCACGTGGTGGAAGGAGAGA
AGTGACCTACACAAGACGTCCTCTGACCTGTACATACACATCATCACATCATGAATGCAC
ATGCCAGTGCGCACGCGCGCGCACACACACACACACACACACACACACACAAGTTTTTTT
TAAAAACTTTAAATTTAAAAAAAATAAAAGTCAAAATGGAGCTGGAGACATGGCAGCAGT
TAGGAGCTCGGCCGTTCTTGTAGAGAACCCACCCATGTTCAAGTCCATCACCCACCTGAC
AGCTCATAACCTCCTGTAACTCCAGTTCCAAGGAATCTAACATCCTCCTGGGCACCTGCA
TGCATGTGGTGCACCTGCGCACTCGGTCACGCACATACACATTCAGTTGTACTTTAACAG
TCAAAATGAAAATTGCCATCACATTATATTACATATTTGCATTATAGTGGCCTTATGTAA
CCAGGGTTGTTTTTTTTTTTTTTTTTAATTAAAAAATAAAACTAGAGCTTTTTTTTGTTG
TCAATATTAAAAACCTGGTAAGGGGGCTGGAGAGGTGGCTCAGCGGTTAAAAGCACTGAC
TGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAAACACATGGTGGCTCACAACCATCT
GTAATGGGATCTGACACCCTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTACTCACATA
AATAAAATAAATAAATCTTTTTTTAAAATAAAATAAAATAAAAAATAGAACCAGAAGGAA
AGAAAATAAGCTGCAGAAAGTCAAGTGCCACGGGCTCCCATGTCTCTTTAGTATTTTTGG
ATGAAAATGAAATCCCAGAGGCAGTCTTTGCTGTAAATCC..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GAGTTGCTGTGGTCATGGTGTCTGTTCTCTGCAATAAAACCCTAAGACAA CAGGGAACATTGGCTTTACCAGAATCCCCTTTACTACACAATTTTGAGAGTTTGCTTTTT GAATATCTGTAGGGCCAGGCATAGTGGATCTGGCCATTAATCCCAGCACTCTGGAAGCAG AGGCCGGAGGATGTCTGTGAGTTCAAGAACAACCTGTTCTACAGCAAGTCCCAGGGCAGC TAGGACTTTGTAGGGAGACACTTTCTCAAATTTTAAACAAAAGAACATAAGCTATTACAT TTCTCTCTCCCCCTCCCTTCGTCTGCAGCTTTTCCCCTTGACAATCATTCATTCAGTGAA GAGCTTTGTGTCCAGTATTCCAGACTCCCATGAAAATCGAAAATCGATCCTCTCTGTCTA ATTATGCTAACCAGAGAGAAACGCTTCCAGTTTCGTCAGCATAGACCATACATATATAAA ATAAGGGGCAGTGTCTACAAGTAAAACAGTTGCTGGAGTAGGCCGGCCAAGGATTCTACT CGTTTCTAAATAATCAGATGACTTTTTAAAGTTTCTGTATATAAGTTACTTGCCCCAGAT CTACAATCTATCTGAAGAGATACATGCATTTGCTCTCCTTTATCCTTTTCTTTGAGTTGA AGGATATTCGAGGTGCTCCATTCTCCCTCTCTTTGTGCGGGTCACTATGCAGCCCTACCC ACCCCCAACCCACTTCAGGGACCGCCAGACCTTTTCAGAGCTCTTTGCAAACCTGCAGGA GGAGGCGAAGGCATTTCCTGCTTGCACCGGCGATCGCCTCTGCCCTCCTATCTCTCTTCT CCCACGGCCCATCTGTGCCTCCTCTCTGCTCCCTTCCTTGCCACCCCCGCCCTCGGCTGG GTGCTCCCGGCCCCTCCCGCGCCCGTCTGTATTTGGAGCTGCCGGAAGCCGCGGGCGACT CTCCCCGAGAGCAGCGTGACCGACTCGGGCTCCCGTGCAGGGGGGAGGCG
1	EXON 1	46,502,125	46,502,211	-	-	87	GAGGCAGCACCGGGCCTGCGGGAGGAGGGCGCAAGTGGCCGGAGCTGGCTTTGCATCACC GAAGCCAGGACCTGGGCTCTACAGCAG
	INTRON 1 - 2	46,502,212	46,525,414			23,203	GTCAGGCTGGAACGCGGAGGGGGAC..........ATAATCTCCGTCTGTGTCTTTCTAG
2	EXON 2	46,525,415	46,525,536	-	1	122	AATGACAGACATGGCGGGACTGATGGAGAGGCTGGAACGTGCAGTCATCCGGCTGGAGCA GCTGTCTGCAGGGTTAGACGGACCTCCCAGAGGCTGCGGGGAAGTGAATGGTGTCAATGG AG
	INTRON 2 - 3	46,525,537	46,530,976			5,440	GTAGGGCCACCACCTGATGTCATTA..........GTAACCAAGCCGTTCTCTTCCACAG
3	EXON 3	46,530,977	46,531,077	1	0	101	GTGTGGCACCGTCCGTGGAAGCCTTTGACAAACTGATAAACAGTATGGTGGCCGAGTTCT TAAAGAACAGCCGAGTCCTTGCTGGTGACGTAGAGACTCAC
	INTRON 3 - 4	46,531,078	46,560,503			29,426	GTGAGTGCTTCTTGTCCCTCGGGCA..........CTGCTGCCTTCTTTTCTGTCTGCAG
4	EXON 4	46,560,504	46,560,581	0	0	78	GCAGAAATGGTGCACGGTGCTTTCCAAGCCCAGCGTGCTTTTCTTCTCATGGTCTCGCAG TACCAACAACCCCAGGAG
	INTRON 4 - 5	46,560,582	46,635,620			75,039	GTAAGAGCAGCTTGTAATAAACAGG..........AGCTCCCATCTTCTGTCTCCCACAG
5	EXON 5	46,635,621	46,635,810	0	1	190	GGTCCTGTGGCATCCACAGCGTCAGCGTTTTCCATCCTCTCCTCTGGGCCTGGTCTCCCG CCACCACCTCCACCACCACCTCCTCCTGGGCCACCTCCACCCTTTGAGAATGAGGATAAA AAGGAGGAGCCCTCCCCTTCTCGCTCAGCTTTATTTGCCCAGCTCAATCAAGGAGAAGCC ATCACTAAAG
	INTRON 5 - 6	46,635,811	46,637,848			2,038	GTAAGAAAACAAATCCTGGAAACTG..........AATTAAAACTGCCCTGCCTTCCTAG
6	EXON 6	46,637,849	46,638,021	1	0	173	GGCTCCGGCATGTCACAGATGACAAGAAGACATACAAGAATCCCAGCCTGAGGGCTCAAG GACAGATTCGCTCTCCAACCAAAACTCACACGCCGAGCCCCACATCTCCAAAATCGAATT CTCCTCAGAAACATACTCCAGTGTTGGAGCTGGAAGGGAAGAAGTGGAGAGTG
	INTRON 6 - 7	46,638,022	46,639,822			1,801	GTAAGTATAATCCTGTGACATGATT..........ATGCCCATGTCTGTTTTACCTTTAG
7	EXON 7	46,639,823	46,639,946	0	1	124	GAATACCAAGAGGACAGGAATGACCTTGTCATCTCCGAGACCGAGCTGAAACAAGTGGCT TACATTTTCAAATGTGACAAATCCACTCTTCAGATAAAGGGAAAAGTGAACTCCATCACT GTCG
	INTRON 7 - 8	46,639,947	46,640,039			93	GTAGGCAAAGCTTAGGCTGTGTGCT..........CCAGAGCTTCGTTCTCCTCTTTTAG
8	EXON 8	46,640,040	46,640,122	1	0	83	ATAACTGCAAGAAGTTTGGCCTGGTGTTTGATCATGTGGTGGGCATTGTGGAAGTGATCA ACTCCAAGGACATTCAGATCCAG
	INTRON 8 - 9	46,640,123	46,646,525			6,403	GTGAGCAGCCTCTAGGGACCATGCT..........CTTCAGTCCCATTTTTTCCCCTTAG
9	EXON 9	46,646,526	46,646,666	0	0	141	GTAATGGGGAGAGTACCAACAATCTCCATTAATAAGACAGAAGGATGCCACCTGTACCTC AGTGAAGATGCACTAGACTGTGAGATCGTGAGCGCGAAGTCGTCCGAGATGAATGTCCTG GTCCCTCAGGATGACGATTAT
	INTRON 9 - 10	46,646,667	46,648,280			1,614	GTGAGTACCTCCCAAAAGCCTGCCC..........AACTGTCTTTCTCAACTTCTTCCAG
10	EXON 10	46,648,281	46,649,635	0	-	1,355	AGAGAATTCCCCATTCCCGAGCAGTTCAAGACAATATGGGATGGCTCCAAGCTGGTCACC GAACCTGCAGAGATCATGGCCTGACATCCAAGAGATAGCCTTCCCTGAGTCTCCTCTAGC GAACAGAAGCAAGCAGCTAATAGGAGCTAGATTTTACCATAGCCCCGACGCCCGTGTCCG TGTCCGAATCCTGCAGTTCTGTGCCATGGAAAACAGTATCTTTTCTGGCAGGCTTTTATG GGCGTTTTGAAATATTTAACATTTGATCATGATTTGTGTGTGATTTTACTTCCACGTGAT AACTAGTAAACACGGCAGTTAAAGGGAAAAGAATTCTGTTCCCATCACACCACCAACTCC GTAACTGATAAGGAAAAGCCCTGCCTATTTCTTCCTTTCAGTTTAATTGCTAGTTGAAAA AAAAAAATGAAGCCTTAGAGAACCTATGTATGTTTTTACCTTTTAGACAACTTTAAAATA GTCTTGTGCCCTAAAGAATAAGGCTCTATTTTTTAATTTTTACGTGCTCCCCTTTATCAG CATGGATATCCTGTCAGCATGAATGAATTCTTCAATCCATGCTTTTACACACACATATAC ACAAAGAGAAAACATCTAAGGAAACACAATATACCCTTTATAGTTACTGAAAAACAAAAG AAATCCTAACTCCATCTTTCTCATGAGTCACTTTAAAAGTTCTAATTTGCCTGCATATCC TAAGACAAAGGGTGGTGGCAGGGAGGGGTGGGGTGTGGTAGGGACTCAGTCCTCAGTTTG TGCTTTGTAATACCTCATGGTCTGGTTTGAAGGATAACTCGGCCTTTGCGTTGCAGTTTT GAAGTCACCCATACTATCAGACAACCCCATACAGGTCTCAAATGCTTATTAGAGATGAGT CCCTTTTCCGATGGCCAGGCTAACCAGTGCTAACCAGCCTCAAAGACAAAAATGCCCAAG AGCCTGACTTTTGCTTCTCGAATCAGTTTTTTGGCTCTGGTTGGGTTTTCTAGTCTTAAT AGTACACAGACTTCCAGGCGAGCAACAACACTCTTCGTGTCTCTTCTCTGCACGTGGCCG AGAACTCTGCAGCTTTTTGGGTCCTGTGTAACGAAGCATAGCGCTAAGCTTTTGGAACCA GTGGGAGCATCTAGATTGTGCCTACGAAGACCCTGCTGGCTATCGTTTTTTCAGTTTTCT AATAGCTTCTATATCCATACAGTATTCATATCACTGATGTTTGTGTATCAAAGTTTTGCT ATAAAAGTTCTGTCCTTATGAACTATATGGTGGCTTTAGTAAGTATAATTTTTTGAACAG TAAAGTTATACCAAGTAAAACCAAATTGTTTAAAT
	3' upstream sequence						ACTGAGATGAATTCTCATTTTGGTTTTGCATTTGTTTTGCCCTGTTTTATCTTTCACTTG CTGCTTGTTGATTTGTTTGCGGTCAGCCAGAGATACAAAGTGAGACACTATTGGAGGTAG TTAATGCCGAGCCTGACAACTTGAGTGTGATCTCCAGGAACCACGTGGTGGAAGGAGAGA AGTGACCTACACAAGACGTCCTCTGACCTGTACATACACATCATCACATCATGAATGCAC ATGCCAGTGCGCACGCGCGCGCACACACACACACACACACACACACACACAAGTTTTTTT TAAAAACTTTAAATTTAAAAAAAATAAAAGTCAAAATGGAGCTGGAGACATGGCAGCAGT TAGGAGCTCGGCCGTTCTTGTAGAGAACCCACCCATGTTCAAGTCCATCACCCACCTGAC AGCTCATAACCTCCTGTAACTCCAGTTCCAAGGAATCTAACATCCTCCTGGGCACCTGCA TGCATGTGGTGCACCTGCGCACTCGGTCACGCACATACACATTCAGTTGTACTTTAACAG TCAAAATGAAAATTGCCATCACATTATATTACATATTTGCATTATAGTGGCCTTATGTAA CCAGGGTTGTTTTTTTTTTTTTTTTTAATTAAAAAATAAAACTAGAGCTTTTTTTTGTTG TCAATATTAAAAACCTGGTAAGGGGGCTGGAGAGGTGGCTCAGCGGTTAAAAGCACTGAC TGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAAACACATGGTGGCTCACAACCATCT GTAATGGGATCTGACACCCTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTACTCACATA AATAAAATAAATAAATCTTTTTTTAAAATAAAATAAAATAAAAAATAGAACCAGAAGGAA AGAAAATAAGCTGCAGAAAGTCAAGTGCCACGGGCTCCCATGTCTCTTTAGTATTTTTGG ATGAAAATGAAATCCCAGAGGCAGTCTTTGCTGTAAATCC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cap2 (ENSMUSG00000021373)
Transcript ID	ENSMUST00000119341

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 365 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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