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Target CDS Information

Gene Symbol (Gene ID) Lypla1 (ENSMUSG00000025903)
Cross Reference
EMBL AC102311
GO GO:0002084, GO:0005739, GO:0005829, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Lypla1-009
OTTP OTTMUSP00000062521
OTTT OTTMUST00000051170
UCSC uc007afh.1
UniParc UPI000268B569
Uniprot/SPTREMBL J3QQ63
Vega_transcript Lypla1-009, OTTMUST00000051170
Vega_translation 178612, OTTMUSP00000062521
Definition protein_id:ENSMUSP00000137647
translation:
MCGNNMSAPMPAVVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSPHIKYICPHAPVMP
VTLNMNMAMPSWFDIVGLSPDSQEDESGIKQA

Chromosome 1
Length
Position(start - end)
33,197
4,807,914 - 4,841,112
Orient to Chromosome plus
Link Location : (1:4807914-4841112)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lypla1 (ENSMUSG00000025903)
Transcript ID ENSMUST00000119612
Reports
substitution
cSNPs0
Insertion39
Deletion41
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000119612)
MCGNNMSAPMPAVVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSPHIKYICPHAPVMP
VTLNMNMAMPSWFDIVGLSPDSQEDESGIKQA*
MSMv4 transcript
MCGNNMSAPMPAVVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSPHIKYICPHAPVMP
VTLNMNMAMPSWFDIVGLSPDSQEDESGIKQA*
homology100.00 (93 / 93)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lypla1 (ENSMUSG00000025903)
Transcript ID ENSMUST00000119612
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TATGTTCATAATGAGAGCTAAAGACAGTTGTGTTTTCTTTTAAAGTCACA
AAGAAAAGACCTAACAGTTTGACTTAAATATAGTGGCATTGCTGGGTGTGGTGGCAAACA
CACTCAGGAGGTAGAGTTAGGAGTTTGAGGCCTGCCTGGTCTGCAATGTGAGTTCCAGGA
CAACCAAGGCTACACAGAGAAACCATGTATCGAAAAAGCAAAAAATATATAGAGGCATAA
GCCTTGTGAATCACATTACTACCATTTTGGGGGAGGGTTATCAATTTAACATTTTTGAGA
ATGTTTAAACTTTTCAATATTTAAGGGCAAGACTGATTTAAAACCGTTTTGAATAAGACT
CCAAAATCTCTCAGGACCTAGATTTTCCTGTGTAATTTAATTAAGTCTTTTAGTCTTTAA
GTCTTAGTTCACAAACTCCTTTCCAGTCAAAACTGTATATTTGGTTTCCTCACTGGATTG
CAGACTTCTGAAGGTCATGACATTTTGACCTTAAATGTTTGCCATGAACCGTTCCCCAGT
TATACATACTATATATGCAATAAATTCAGCGCTGTGCAGAAGGGTGGCGATTTTGCCCCG
TGTTCAAAACGGCTATATTTCAATGAATACCTGTCCTTTAGTTAATGACGTTGACCTGCC
TGGGGAAGTGAAATCGGGAGTCACGCGTCAAGCGCGCAGGGGACCACAGCAAGAGCTCGC
CCCGCCTAGCCTCGGTCCCAGCAGCGGTCCCTGCTACCTGCCGCTGGTCCAGGCCCTGCG
GGCGTGGATGGACAGCGAGAGGTTAGCAGCGGCCCGCACTGCTCCAGCTCGGTGCGGGAA
GGCTCACTATGACGCGCACGCGCGGCCGAATCGGGGCGCGAGCTCGGGGCCGAACGCGAG
GAACAGTGCAGGGCGGCGCGGGGGCGCGCACGCGCCTGAGCGCGCGCCCGGAGGGGCGGG
CTGGGACTTTCGGCTGCCGGGAGCCCGAGTTCCCTTCCGCTTCCGACGCA
1 EXON 1 4,807,896 4,807,982 - 0 87
CTGTCCGCCAGCCGGTGGATGTGCGGCAACAACATGTCCGCTCCGATGCCCGCCGTTGTG
CCGGCCGCCCGGAAGGCCACCGCCGCG
INTRON 1 - 2 4,807,983 4,808,454 472
GTGAGTGGCGGCGCCCGGGCCTGGG..........CTTATTTTGTCTTATTCTCTTTTAG
2 EXON 2 4,808,455 4,808,486 0 2 32
GTTATTTTCCTTCACGGATTGGGAGATACAGG
INTRON 2 - 3 4,808,487 4,828,583 20,097
GTAGGTGCCATTGTTAGTACCTAAG..........CATGCTTTTCATACTTTTCTACCAG
3 EXON 3 4,828,584 4,828,649 2 2 66
GCATGGATGGGCAGAAGCCTTTGCAGGTATCAAAAGTCCCCACATCAAATACATCTGTCC
ACATGC
INTRON 3 - 4 4,828,650 4,830,267 1,618
GTGAGTATTTCTAATATTTAGCTTT..........TGCTGTTTGTTTCTTTTCCACCTAG
4 EXON 4 4,830,268 4,830,315 2 2 48
CCCTGTGATGCCAGTCACATTAAATATGAATATGGCTATGCCTTCTTG
INTRON 4 - 5 4,830,316 4,832,310 1,995
GTAAGTAAGAGTTTACTTCCTCATT..........ATTTCACACTGTGCTTGTATTCTAG
5 EXON 5 4,832,311 4,832,368 2 0 58
GTTTGATATCGTTGGACTTTCACCAGATTCCCAGGAAGATGAATCTGGAATTAAACAG
INTRON 5 - 6 4,832,369 4,841,106 8,738
GCAGCAGAAACTGGTGAGTACCGAA..........AATGTAACCTTCAAAATCTATGAAG
6 EXON 6 4,841,107 4,841,132 0 - 26
GCATGATGCACAGCTCATGTCAGCAG
INTRON 6 - 7 4,841,133 4,844,962 3,830
GTAGGTGTCTCTGGAAGCAGTGAGT..........TCATTAAATCATTTTTTCCAAACAG
7 EXON 7 4,844,963 4,845,174 - - 212
GAAATGATGGATGTCAAGCACTTCATTGATAAGCTCCTACCTCCAATTGATTGACATCAC
TAAGAGGCCTTGAGTAGAAGTTCACCAGCATCACAGTAGTAGAGTATAAACCTCTTCCCA
TGACTGACCATAGAACTTCTAATGTGTGCAGTGTTAAAATGTTTTGCAAATACATACCAA
TGATACAGACTAAATGATGTTACCCTCATGGG
3' upstream sequence
AAATATATGATCCTTTTAAGTGTCTATGCATATATTTGTATTATACAATTCAGAATATAC
TAAGTATTACAGTAGGTAAGTGAAGCAACTAGATTCTTTGTCTCAAATTCAGCAAAATAA
GATAACAAACAGTTTTATTACATCATTTGAAAATTACTAGTATGTTCTGTGAAGATGTGT
TCAGGTAAGATGTAAGTGACTTCTTAGTTCTGTGAGTTAGACTATAGTTTTACTCCACAA
TTGTTCAGTCTCCATGCAGTGTCTGTATTTTTCTGTTTGTATTCACATAGATGATACTAT
AATAGCTAAGAATCAGATGGTATTACATTATCCCTAATAATAGGGATAATGCTTTTGAGT
GTCAAAAAGTAATACTGCATTCTTCAATTAATGGCCCTTCTATTGGGAGACCAGGCTTTT
TTTCCCTTCTATGTAATTTTTCTCAAGAAAAAACAAGGTTCTTTTTTGATTTTCCATAGA
AAACTAATATTGCCTCTCTGTCATATATTTTATTTTGACATTTTGAGATACAGACATAGC
CGGGCGTGGTGGTGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATCTC
TGTCAATAGCCTGGTCCACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC
TGTCTCGGAAACAAACAAACAAACAAAAGGAAACACAGACATACAGTATTTCCAACCTAG
GTAATATGAAAAGAAATCAAACATTACTTAAGTTTATATATTTCAAATAACTGCACCTTA
GTCCAACTTTAGACTGTAGAGTTATAGACTCTCCAGTCCTGGTAATAAATCTGTGGTTTT
ATTTTTCTGTAAAACACTTAAAGGGGAAGTAATATCTTGGCATATTTAGAAATACTTGTG
ACTGGCTTCAAAATATAATTTCTTAAATATCTTATAGCCGATTTTAAGTTTACATTTTCT
GTACATGTTATGCTTAAAACCAAATACTGTTCAAGATGAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Lypla1 (ENSMUSG00000025903)
Transcript ID ENSMUST00000119612
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 93 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information