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Target CDS Information

Gene Symbol (Gene ID) Simc1 (ENSMUSG00000043183)
Cross Reference
CCDS CCDS26528.2
EMBL AC155262, AC165145
GO GO:0005575, GO:0008150, GO:0032184
goslim_goa GO:0003674, GO:0005575, GO:0008150, ...show all
MGI_trans_name Simc1-001
OTTP OTTMUSP00000034689
OTTT OTTMUST00000068548
RefSeq_mRNA NM_176987.4
RefSeq_mRNA_predicted XM_011244528.1, XM_011244530.1, XM_011244531.1
RefSeq_peptide NP_795961
RefSeq_peptide_predicted XP_011242830.1, XP_011242831.1, XP_011242832.1, ...show all
UCSC uc007qoe.2
UniParc UPI0001611554
Uniprot/SPTREMBL E9Q6E9
Vega_transcript OTTMUST00000068548, Simc1-001
Vega_translation 214480, OTTMUSP00000034689
Definition protein_id:ENSMUSP00000113676
translation:
MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVDFIDLTRENRARTKDRN
GLCVIDLTRNEEENRPIATLDLTLEPVASSQKEPTSLQTCTSLSGKEVMEAHEDRGSQPA
AQRIINNDPVDLDLLEENLFEGSRPPTSISQDSVYPPEPNCSSITYKGDLSFLTSLQLSS
DVSSFSSTSNQRASLPCPQQDVPCQSQGLLCPLQALSCPQTASPCPPRASSCPPQALSCP
PQALSCPSQTLQCQLQALPQPPQEVPCSTQNVPCPQQNMPSTPQGLSWHPRHTLYPYQDT
LGLPQDVPGRPQNMSYPQDVTQLQDMPWSLHDMPLSLQDVLQSLQDVPPLLGDVPPSPEV
MQLPGYVTQTSRDVIQSPAGVTQSLGSMMQSPGSVTQSLRSVMQSSGSVTQSLRSVMQSS
GSVTQSLRSVMQSSGSVMQSPGGVTQSLRSVTQSPGGVMQSPGGVMQSPRDVMQSPRDVM
QSPRDVMQSPRGVTQSLGSMMQSPGGVMQSLRSVMQSSGGVTQSLRSVMQSPGGVMQSPG
GVTQSPRGMIKSPGMMLSPGDVIQSLNSVPQSSRDRMQSAGHVPSASGDAIQSPGGMSPT
SRDRMQSPGGVSLATEDSIQLPGGVPLSSDVIQSQGGVPLSSKDRMQSPGGVPPSSGDMI
QSQGGVPQSLGDAIQSAGGVPQSSGDAIQSPGGVSLATGDSIQLPGGVPLSSGDVIQSQG
GVPRSSRDRMQSPGGVPPSSGGVIQSPGGVSPASGDAIQSPGSVLPASGDAIQSAGGVLL
ASGDAIQSPRSVPQSPSGTLRSPGNMSESLGDTPNLSGDVSNSPQALLDLARDRPKSSPN
DVQNRDTPMDISASSSSSCSANPQSRQSEFKLDKVPWLTITDSSARREKSLPQLANPGSA
QIQGQIPQVGVYNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRESKGQKLEPIPHRRLRM
VTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIVQKILLSGSETVDVLKEAYMLLMKI
QQLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQ
SIANTVLSCDKQPHNVRDVIKWLVKAVTENELTPPQDETQTSPRTGVLKTSSDHLSPRPN
QNKNTNQLIVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMES
HLLRCKVLEIIFLHSCETPTRLPLSLAQTLYFLNNSTSLLKCQSDKTQWQTWDELVEHLQ
FLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVLDVEKQIEAFRSRLVHILG
EPLVPQLQDKVHLLKLLLFYAADLNPDTEPASEH

Chromosome 13
Length
Position(start - end)
46,756
54,503,876 - 54,550,633
Orient to Chromosome plus
Link Location : (13:54503876-54550633)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Simc1 (ENSMUSG00000043183)
Transcript ID ENSMUST00000121401
Reports
substitution
cSNPs21
Insertion24
Deletion52
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num18
synonymous substitutions 54525214 (p.Val458Val), 54525235 (p.Val465Val), 54547266 (p.Thr1247Thr),
non-synonymous substitutions 54524330 (p.Ile164Val), 54524985 (p.Thr382Ile), 54525014 (p.Pro392Ser), 54525017 (p.Gly393Arg), 54525021 (p.Ser394Asn), 54525132 (p.Met431Thr), 54525195 (p.Thr452Met), 54525203 (p.Pro455Ser), 54525209 (p.Gly457Ser), 54525227 (p.Gly463Arg), 54525228 (p.Gly463Glu), 54525231 (p.Gly464Asp), 54525249 (p.Arg470Lys), 54525571 (p.Met577Ile), 54525756 (p.Pro639Gln), 54525786 (p.Pro649Leu), 54526281 (p.Pro814Leu), 54526500 (p.Arg887Lys),
B6 transcript
(ENSMUST00000121401)
MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVDFIDLTRENRARTKDRN
GLCVIDLTRNEEENRPIATLDLTLEPVASSQKEPTSLQTCTSLSGKEVMEAHEDRGSQPA
AQRIINNDPVDLDLLEENLFEGSRPPTSISQDSVYPPEPNCSSITYKGDLSFLTSLQLSS
DVSSFSSTSNQRASLPCPQQDVPCQSQGLLCPLQALSCPQTASPCPPRASSCPPQALSCP
PQALSCPSQTLQCQLQALPQPPQEVPCSTQNVPCPQQNMPSTPQGLSWHPRHTLYPYQDT
LGLPQDVPGRPQNMSYPQDVTQLQDMPWSLHDMPLSLQDVLQSLQDVPPLLGDVPPSPEV
MQLPGYVTQTSRDVIQSPAGVTQSLGSMMQSPGSVTQSLRSVMQSSGSVTQSLRSVMQSS
GSVTQSLRSVMQSSGSVMQSPGGVTQSLRSVTQSPGGVMQSPGGVMQSPRDVMQSPRDVM
QSPRDVMQSPRGVTQSLGSMMQSPGGVMQSLRSVMQSSGGVTQSLRSVMQSPGGVMQSPG
GVTQSPRGMIKSPGMMLSPGDVIQSLNSVPQSSRDRMQSAGHVPSASGDAIQSPGGMSPT
SRDRMQSPGGVSLATEDSIQLPGGVPLSSDVIQSQGGVPLSSKDRMQSPGGVPPSSGDMI
QSQGGVPQSLGDAIQSAGGVPQSSGDAIQSPGGVSLATGDSIQLPGGVPLSSGDVIQSQG
GVPRSSRDRMQSPGGVPPSSGGVIQSPGGVSPASGDAIQSPGSVLPASGDAIQSAGGVLL
ASGDAIQSPRSVPQSPSGTLRSPGNMSESLGDTPNLSGDVSNSPQALLDLARDRPKSSPN
DVQNRDTPMDISASSSSSCSANPQSRQSEFKLDKVPWLTITDSSARREKSLPQLANPGSA
QIQGQIPQVGVYNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRESKGQKLEPIPHRRLRM
VTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIVQKILLSGSETVDVLKEAYMLLMKI
QQLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQ
SIANTVLSCDKQPHNVRDVIKWLVKAVTENELTPPQDETQTSPRTGVLKTSSDHLSPRPN
QNKNTNQLIVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMES
HLLRCKVLEIIFLHSCETPTRLPLSLAQTLYFLNNSTSLLKCQSDKTQWQTWDELVEHLQ
FLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVLDVEKQIEAFRSRLVHILG
EPLVPQLQDKVHLLKLLLFYAADLNPDTEPASEH*
MSMv4 transcript
MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVDFIDLTRENRARTKDRN
GLCVIDLTRNEEENRPIATLDLTLEPVASSQKEPTSLQTCTSLSGKEVMEAHEDRGSQPA
AQRIINNDPVDLDLLEENLFEGSRPPTSISQDSVYPPEPNCSSVTYKGDLSFLTSLQLSS
DVSSFSSTSNQRASLPCPQQDVPCQSQGLLCPLQALSCPQTASPCPPRASSCPPQALSCP
PQALSCPSQTLQCQLQALPQPPQEVPCSTQNVPCPQQNMPSTPQGLSWHPRHTLYPYQDT
LGLPQDVPGRPQNMSYPQDVTQLQDMPWSLHDMPLSLQDVLQSLQDVPPLLGDVPPSPEV
MQLPGYVTQTSRDVIQSPAGVIQSLGSMMQSSRNVTQSLRSVMQSSGSVTQSLRSVMQSS
GSVTQSLRSVTQSSGSVMQSPGGVTQSLRSVMQSSGSVMQSPKDVMQSPKDVMQSPRDVM
QSPRDVMQSPRGVTQSLGSMMQSPGGVMQSLRSVMQSSGGVTQSLRSVMQSPGGVMQSPG
GVTQSPRGMIKSPGMMLSPGDVIQSLNSVPQSSRDRIQSAGHVPSASGDAIQSPGGMSPT
SRDRMQSPGGVSLATEDSIQLPGGVPLSSDVIQSQGGVQLSSKDRMQSLGGVPPSSGDMI
QSQGGVPQSLGDAIQSAGGVPQSSGDAIQSPGGVSLATGDSIQLPGGVPLSSGDVIQSQG
GVPRSSRDRMQSPGGVPPSSGGVIQSPGGVSPASGDAIQSPGSVLPASGDAIQSAGGVLL
ASGDAIQSPRSVPQSPSGTLRSPGNMSESLGDTLNLSGDVSNSPQALLDLARDRPKSSPN
DVQNRDTPMDISASSSSSCSANPQSRQSEFKLDKVPWLTITDSSARKEKSLPQLANPGSA
QIQGQIPQVGVYNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRESKGQKLEPIPHRRLRM
VTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIVQKILLSGSETVDVLKEAYMLLMKI
QQLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQ
SIANTVLSCDKQPHNVRDVIKWLVKAVTENELTPPQDETQTSPRTGVLKTSSDHLSPRPN
QNKNTNQLIVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMES
HLLRCKVLEIIFLHSCETPTRLPLSLAQTLYFLNNSTSLLKCQSDKTQWQTWDELVEHLQ
FLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVLDVEKQIEAFRSRLVHILG
EPLVPQLQDKVHLLKLLLFYAADLNPDTEPASEH*
homology98.75 (1355 / 1355)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Simc1 (ENSMUSG00000043183)
Transcript ID ENSMUST00000121401
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CCTTTTTGTTAAAGACATTTTATTATTCTATTTTTTGAAGTTACTTGAGC
ATAAGCAGCAGGGTTTTGTCAGTATTGCACATTTTTAAAATAGCCATGGGCCCTATTTTG
ATTTAATGTCCCTACCCTTCAACAAAACAACCAAAGAATTCACTACTTACCCATATTTCC
CTCTGATGGGGATACAATTTTATCCCTATATTTTCTGCTTGCTCACAGCATTGGAGTATA
CGGGCACTCTGGGACCTCATAGCTCTCTGTATGTGCCTTTTCAGTGGTTTCCGTCAACTA
GAAACTCAACAAACTCTTACATCTGACAGTTTAAATTCCTGTGACACGTATTGTTGGTGA
AACCGCAAATCGGCACAACTTAAGACAATTTGGTACCATTTGTCAAAATAACAATAAAAA
CATAGATTTGATCCAATAAACCTGCTTCTGGGAATTTATCCCACGGATTTACCTGCACAC
ACAAGAGTGGGTATCTCTCCCTTATCTCAGCCAGAAGCCCCAGTCAATAAAACCCTAGGT
TCAGGTTACCCTTTTCAGCCCCTCAGGGCTTCTTTAACCCGAAGGCGTCACTGCTCCTTC
TGCCAGGTGCAGGCTCCACTACCGGGTCAATTAAATGCGCTATCAGAGGCTCCATCAGCT
CACTCCAGTCCTCACACCTGCAGCCAGGGGCTCGTCACCAGCACTGCCCACTGTGATCGG
TTGAGAGCGGCGGCGGACAACCTCTCAACCTCAGCGTTTTTCAAGCCCGCCGACCATGCG
GCCCAGCCCCTCGGTTCTATCCCTCCCTTTCCCTCTCTTCCCTCTCTCTCCTTCTCTGAG
GGAAAGGGAGCCTGGCTCCTCCAGGGTTCTGTGACACTGCCCTGACCCGGGCGCGCGGCT
GCCCCCGAGATAGGCGGGGCTCCGAGCGGGACCGGTCCTCTGGAGGCGGGGCGCGGTGGG
GGCGGGGCAATGGAGGGGGCGGGGCCGGCGGGGTACTAACCCCGGTGTCG
1 EXON 1 54,503,779 54,504,004 - 0 226
GCGACGCCTTCGCTGCAGTCGCTTCAGCAGCTGGAACCGGAGTCGGAGTCGCCGGGGCCG
CTCGCCGCTCGCGCGTGGCTCCGCCGGGCCCGTAGCCATGGAGGACTTTATCGTGATCTC
CGACGACAGTGGCTCCGAGAGCTCGGCCGGGACCCGCTCGGGCAGGGCGCGGAGGCTGCG
CCGGGCCCTGTCTCGGACCCCCGGCGCGCTGCCCCGCCGAACCGTG
INTRON 1 - 2 54,504,005 54,523,969 19,965
GTGAGTGAATCCACTGCCGCTCGCC..........TCTCCCTTCTCACAATCTTTAACAG
2 EXON 2 54,523,970 54,526,672 0 0 2,703
GACTTCATTGACTTAACTAGAGAAAACCGAGCAAGGACAAAAGACCGGAATGGACTCTGT
GTGATTGATCTAACAAGAAATGAGGAAGAAAATAGGCCTATTGCCACTCTTGATTTGACT
TTAGAACCTGTAGCTTCCTCTCAGAAGGAGCCAACCAGTCTTCAGACATGTACCAGTCTC
TCGGGCAAAGAAGTGATGGAAGCCCATGAAGATAGAGGCTCTCAGCCTGCAGCACAGAGA
ATCATTAACAATGATCCTGTAGATTTGGATTTGCTAGAGGAAAACCTGTTTGAAGGTTCT
CGACCCCCTACATCTATCAGCCAGGACTCTGTTTATCCACCAGAACCAAACTGTAGCTCA
GTCACATATAAAGGTGACCTCAGCTTCTTGACAAGCCTACAGCTCTCTTCAGATGTTAGC
TCCTTCTCCTCCACAAGCAATCAGAGGGCCTCTTTGCCATGCCCACAGCAAGATGTGCCT
TGTCAATCACAAGGCTTGCTATGCCCGCTACAGGCCTTATCATGCCCACAAACAGCTTCA
CCATGTCCACCACGAGCTTCCTCATGCCCACCACAAGCCCTGTCATGCCCACCTCAAGCT
TTGTCATGCCCATCACAAACTTTACAGTGCCAACTCCAAGCTTTGCCTCAACCACCTCAA
GAAGTGCCATGCTCTACCCAAAATGTACCGTGCCCTCAGCAGAATATGCCAAGCACACCT
CAAGGCTTATCATGGCATCCTCGACACACCCTATACCCATATCAAGACACTCTGGGCCTA
CCTCAAGATGTTCCAGGCCGACCTCAAAACATGTCATATCCACAAGATGTGACACAACTG
CAAGACATGCCATGGTCACTACATGACATGCCACTGTCACTACAAGATGTGTTACAGTCA
CTGCAAGATGTGCCACCATTGCTGGGAGATGTGCCGCCATCACCAGAAGTGATGCAGTTA
CCAGGATATGTGACACAGACATCAAGAGATGTGATTCAGTCACCGGCAGGTGTGATACAG
TCACTAGGAAGTATGATGCAGTCATCAAGAAATGTGACCCAGTCACTAAGAAGTGTGATG
CAGTCATCAGGAAGTGTGACCCAGTCACTAAGAAGTGTGATGCAGTCATCAGGAAGTGTG
ACCCAGTCACTAAGAAGTGTGACGCAGTCATCAGGAAGTGTGATGCAGTCACCAGGAGGT
GTGACACAGTCACTAAGAAGTGTGATGCAGTCATCAGGAAGTGTAATGCAGTCACCAAAA
GATGTGATGCAGTCACCAAAAGATGTGATGCAGTCACCAAGAGATGTGATGCAGTCACCA
AGAGATGTGATGCAGTCACCAAGAGGTGTGACACAGTCACTAGGAAGTATGATGCAGTCA
CCAGGAGGTGTGATGCAGTCACTAAGAAGTGTAATGCAGTCATCAGGAGGTGTGACACAG
TCACTAAGAAGTGTGATGCAGTCACCAGGAGGTGTGATGCAGTCACCAGGAGGTGTGACA
CAGTCACCAAGAGGTATGATTAAGTCACCAGGAATGATGCTGTCACCAGGAGATGTGATA
CAGTCACTAAACAGTGTGCCACAGTCATCAAGAGATAGGATACAGTCAGCAGGACATGTG
CCATCAGCATCAGGAGATGCAATACAATCACCAGGAGGTATGTCACCGACATCAAGAGAT
AGGATGCAGTCACCAGGAGGTGTGTCACTGGCAACAGAAGATTCGATACAGTTACCAGGA
GGTGTGCCACTATCATCAGATGTGATACAGTCACAAGGAGGTGTGCAATTATCATCAAAA
GATAGGATGCAGTCACTAGGAGGTGTGCCACCATCATCTGGAGATATGATACAGTCACAA
GGAGGTGTGCCACAATCATTAGGAGATGCAATACAGTCAGCAGGAGGTGTGCCACAATCA
TCAGGAGATGCGATACAGTCACCAGGAGGTGTGTCACTGGCAACAGGAGATTCGATACAG
TTACCAGGAGGCGTGCCACTATCATCGGGAGATGTGATACAGTCCCAAGGAGGTGTGCCA
CGGTCATCAAGGGATAGGATGCAGTCACCAGGAGGTGTGCCACCATCATCTGGAGGTGTG
ATACAGTCACCAGGAGGTGTGTCACCAGCATCAGGAGATGCAATACAGTCACCAGGAAGT
GTGTTACCGGCATCAGGAGATGCAATACAGTCAGCAGGAGGTGTGTTACTGGCATCAGGA
GATGCAATACAGTCACCAAGAAGTGTGCCACAGTCACCTAGCGGTACATTGCGGTCACCA
GGCAATATGTCAGAGTCACTTGGAGATACACTAAACTTATCAGGAGATGTGTCAAACTCA
CCACAAGCATTATTGGACTTAGCAAGAGACAGGCCGAAGTCTTCCCCGAATGATGTGCAG
AATCGTGATACTCCTATGGATATCTCAGCTTCATCCTCTTCAAGTTGCTCTGCTAACCCA
CAATCTCGACAGTCTGAATTTAAATTAGATAAAGTTCCTTGGCTCACTATCACAGATAGC
TCAGCCAGGAAAGAGAAATCACTGCCACAGCTTGCCAACCCTGGGTCTGCTCAGATACAA
GGACAAATACCACAAGTTGGGGTATACAATAGACCTTGCCTGCATAGACTGAAATACTTC
TTACGGCCTCCAGTACATCATCTCTTCTTCCAGACATTAATACCAGATAAAGATACACGA
GAG
INTRON 2 - 3 54,526,673 54,528,303 1,631
GTAAGCTAACATACTCACCCACATT..........CCTATCTATCTCTTTGTCTCTACAG
3 EXON 3 54,528,304 54,528,536 0 2 233
AGCAAGGGTCAGAAATTAGAACCCATCCCTCATCGAAGACTAAGAATGGTGACAAACACT
ATTGAAGAAAACTTCCCTTTGGGGACTGTGCAGTTTTTAATGGACTTTGTTTCACCCCAA
CATTACCCACCCAGAGAAATTGTGGCTCACATCGTCCAGAAAATCCTGCTCAGTGGCTCT
GAGACTGTGGATGTCCTCAAGGAGGCCTACATGCTTCTCATGAAAATCCAACA
INTRON 3 - 4 54,528,537 54,529,153 617
GTATGAACCATTACAGTGGGTTGGC..........CTAATTGATGTCACTTGACTTTCAG
4 EXON 4 54,529,154 54,529,223 2 0 70
GCTGCATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTCAT
GGAGGAAGAG
INTRON 4 - 5 54,529,224 54,537,081 7,858
GTAACATAAATTATAAGGACATATC..........TGACTTCTTATTCTTTTTTCCACAG
5 EXON 5 54,537,082 54,537,236 0 2 155
GGACAAACTCTGCCTGGACGAGTTCTCTTTCTACGCTACGTAGTGCAAACCCTGGAAGAT
GACTTCCAGCAGATCTTGAGGAGACAGCGGCAGCACCTACAGCAATCCATTGCAAACACT
GTTCTGTCATGTGACAAACAGCCTCACAATGTCAG
INTRON 5 - 6 54,537,237 54,539,703 2,467
GTAATGAGATACTAGAGCTCTGGTA..........CTTTTTTATCTCTTCTTTATTCCAG
6 EXON 6 54,539,704 54,539,856 2 2 153
AGATGTTATTAAGTGGCTGGTCAAAGCAGTGACTGAAAATGAATTAACTCCACCCCAAGA
TGAGACTCAGACCTCTCCAAGAACAGGAGTCTTGAAAACTAGCAGTGACCATCTGTCTCC
CCGGCCTAACCAGAACAAGAACACCAATCAACT
INTRON 6 - 7 54,539,857 54,541,423 1,567
GTAAGGAGCAAGCAAAGAATTGTCT..........TGTGTCTCCTGTGTTCTGGATCCAG
7 EXON 7 54,541,424 54,541,552 2 2 129
GATTGTGTGTCAGCTTCAGAGGATGTTGTCCATCGCTGTAGAGGTGGACAGGACTCCAAC
CTGCAGCTCCAATAAAATAGCGGAGATGATGTTTGGGTTTGTGCTGGATATCCCTGAGAG
GAGCCAGAG
INTRON 7 - 8 54,541,553 54,546,976 5,424
GTGAGTGTAGTTTGAGCATTTGTTT..........GGGTAACTCCCTCTTGTCCACACAG
8 EXON 8 54,546,977 54,547,133 2 0 157
GGAGATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGATGCAAAGTCCTGGAGATCAT
ATTCCTGCACAGCTGTGAGACACCCACCCGTCTCCCCTTGTCTCTGGCCCAGACCCTCTA
TTTTCTGAACAACTCCACGTCCCTGCTCAAGTGTCAA
INTRON 8 - 9 54,547,134 54,547,254 121
GTATGTTCCTTCCTGCTTCAGAACA..........CCCGCTGCTTTTACTGTCTCTGCAG
9 EXON 9 54,547,255 54,547,339 0 1 85
TCAGATAAAACCCAGTGGCAGACATGGGATGAGCTGGTTGAACATCTGCAGTTCCTGCTG
TCCAGTTATCAACACGTGCTGAGAG
INTRON 9 - 10 54,547,340 54,550,382 3,043
GTAAGGAGCACTTGCTCACAGCAAT..........TTGTTTGATTCCTTCCCGCTTGCAG
10 EXON 10 54,550,383 54,551,290 1 - 908
AGCACCTACGGAGCTCAGTGATTGATCGGAAAGACTTAATCATCAAAAGAATTAAGCCCA
AGCCCCAACAAGGAGATGACATCACGGTGCTGGATGTGGAGAAGCAGATCGAGGCCTTCC
GCAGCCGCCTGGTCCACATATTGGGAGAACCTTTAGTCCCCCAGCTCCAAGACAAAGTGC
ATTTGTTGAAGCTGCTGCTCTTCTATGCTGCGGACTTGAACCCCGACACAGAGCCTGCTT
CAGAGCACTGAGGCAGCCAGACTTCTAAGCACTGCGCACCAAGAATACCTCCCGACTGCC
GCCAGCTACTTAGAAGCCCTGAAGTATGAACAGTAGTTAGGAACATCATAGGACCAAACC
TATCTTATTTATCAGTAGGTTGTAATAACTTTGTAACTCTTCAGTATATATTTTTTTTAT
AATCTTTATCCTAGCCTATTCAAATTTGGCTTAAATATACAAGGTGTATATATTTTTTAT
TAAATTATTTATCTATGCTTTTGAAACAGGCAGTGATATGCACTATATGTCCAACATTTC
CATGCAAGATGTGAAAGAACCCTTCTGCACAATCCATCAGTGTTACACTGGTCAAGATAC
TGACGGCCCGCTCGGCCCAGCTCTGAAAAAAACATTAGTTTTTCCTGAATAGACCATGTT
CTATACTAGACTTTTTATATTGCCCATAAATATGACTCTGTGGCCAGTTTATTAAGTCTA
ACAAAGCAGGCAAAGAAACAAGAGCCTGTCAAACCTGTGGTGTTAATAAGATAGAATAAG
ATGTTTACAGTGCTTGGGCTCCACTATGGGGCAGGCAGAATGGACAAGACAGACCTGGGC
TTGAGAAAGTAGTAAAGATTTTTATTTGTCAATACAAGATAACACAAATAAATTAATTTT
TACATCAA
3' upstream sequence
TCTTAGACTCCAGGGCTTCTCTATGAGGTTAGCTCATTATGTAAATAGCCTACTTACTAT
CTAAAGTGATCGAGCAATCATATGTTGAGTGTTCGAGACCAACAGGCTGTGAACAATGAG
GAGACACAAAAGGGCACTTCCTTGCCTCCTTTCCTCGGTAAGATGTGTTACTGAACAAAT
GAGGCTAACTTGGTGGAAAACGGTCTCAATGTTATCAGAATACAGCCAAGTTCATGTGAA
CCTGAAGACTATATAATCCAGTCATACCTATCGTCTTCTTTAACAAAACCTTAAGCTGGT
GTGGCTATGCACACCTTCAATCCCAGCATTGGACGGCAGAGGCAGGCACATCATCTCTGG
GCATCTACTGATTGAGTTCCAGGCTAGCCACAGCTACAAAGTGAGACACTGTCTCAAAAC
CAAACACACAACTAAAAAAGCCTACTATCCAGGAAGTAGGGGTGACTCCCGCTCAGTGGT
AAAGCACTTGCCTAGAATGAGCAAGTCCCTGCCTGGGCTTAATCTTCAGTAATGGAATTA
GAGTGGGGAACCATTTGCCAGTATGAAACCAGCATCATACTGAATTAGAAGTTAAATTAA
TGTCATGTTAAAATTCGGGGGAAAAAAGGGGGGCTGTATAAGACCTAGTGTTTGTCCTGT
GACACAGCAGATACGGCCCAAGAGAACAAAGTGGTGTGCTGGACTAACCAAGAGAAAGAA
CTTGAGCTGGGCTGTGGTGGTGACCCCCATTAGCTCCAGCACTCGGGAGGCAGGGAGGTG
GATCTCTGTAAGTTCAAGGTCAGCCTGGTCTTCAGAGCTAATTCTAGGTCAGCCAGGGCT
ACACGTAGAATCCCTGTCTTGAAAGAAAAAGAAAAAGAGAGGGTGGGGGTAAGAACAATC
TGTGGTTCAGCTTAGAAAGCCAGGGTCCTGCAAGCTGTGCCCAGCTCTCAGAGAAGTCCA
GGCTAATGCATGTCAGGTGGCCTCCACTGTGCAAACTGGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Simc1 (ENSMUSG00000043183)
Transcript ID ENSMUST00000121401
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1355 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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