MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Tpm3 (ENSMUSG00000027940)

Cross Reference

MGI_trans_name	Tpm3-002
OTTP	OTTMUSP00000038083
OTTT	OTTMUST00000073539
RefSeq_mRNA	NM_001293748.1
RefSeq_peptide	NP_001280677.2
RefSeq_peptide_predicted	XP_011238481.1, XP_011238482.1, XP_011238484.1
UCSC	uc008qbf.3
UniParc	UPI00000283A1
Vega_transcript	OTTMUST00000073539, Tpm3-002
Vega_translation	187784, OTTMUSP00000038083

Definition

protein_id:ENSMUSP00000113578
translation:

MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY
SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA
DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE
ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE
FAERSVAKLEKTIDDLEDELYAQKLKYKAISDELDHALNDMTSI

Chromosome

Length
Position(start - end)

19,196
90,072,737 - 90,091,934

Orient to Chromosome

plus

Link

Location : (3:90072737-90091934)
/

Detail Map

name	Tpm3 (ENSMUSG00000027940)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Tpm3 note : tropomyosin 3, gamma [Source:MGI Symbol;Acc:MGI:1890149]

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000121503

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119570

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000062193

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000029549

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000118566

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119158

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000149432

name	Tpm3 (ENSMUSG00000027940)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000127955

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_001280677.2 RefSeq_mRNA:NM_001293748.1 RefSeq_peptide_predicted:XP_011238481.1 RefSeq_peptide_predicted:XP_011238482.1 RefSeq_peptide_predicted:XP_011238484.1 Vega_transcript:OTTMUST00000073539 Vega_transcript:Tpm3-002 UCSC:uc008qbf.3 MGI_trans_name:Tpm3-002 Vega_translation:187784 Vega_translation:OTTMUSP00000038083 OTTP:OTTMUSP00000038083 OTTT:OTTMUST00000073539 UniParc:UPI00000283A1
definition	note : transcript_id=ENSMUST00000121503 protein_id : ENSMUSP00000113578 translation : MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISDELDHALNDMTSI

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_071709.3 RefSeq_mRNA:NM_022314.3 RefSeq_peptide_predicted:XP_011238483.1 Vega_transcript:OTTMUST00000073538 Vega_transcript:Tpm3-001 Uniprot/SPTREMBL:E9Q5J9 UCSC:uc008qbg.2 EMBL:AC163616 GO:GO:0001725 GO:GO:0002102 GO:GO:0005515 GO:GO:0005737 GO:GO:0030426 GO:GO:0030863 GO:GO:0031941 GO:GO:0032154 GO:GO:0043005 GO:GO:0070062 MGI_trans_name:Tpm3-001 Vega_translation:187785 Vega_translation:OTTMUSP00000038082 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000038082 OTTT:OTTMUST00000073538 UniParc:UPI000154FED0
definition	note : transcript_id=ENSMUST00000119570 protein_id : ENSMUSP00000113978 translation : MMEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS38499.1 Uniprot/SPTREMBL:Q8K0Z5 UCSC:uc008qbg.2 EMBL:AC163616 EMBL:BC029186 GO:GO:0001725 GO:GO:0002102 GO:GO:0005515 GO:GO:0005737 GO:GO:0030426 GO:GO:0030863 GO:GO:0031941 GO:GO:0032154 GO:GO:0043005 GO:GO:0070062 MGI_trans_name:Tpm3-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH29186.1 UniParc:UPI00000282ED
definition	note : transcript_id=ENSMUST00000062193 protein_id : ENSMUSP00000062920 translation : MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS57223.1 RefSeq_peptide:NP_001240667 RefSeq_peptide:NP_001258693.1 RefSeq_mRNA:NM_001253738.1 RefSeq_mRNA:NM_001271764.1 Vega_transcript:OTTMUST00000073540 Vega_transcript:Tpm3-003 Uniprot/SPTREMBL:Q58E70 UCSC:uc008qbj.2 Fantom:E430027O16 Fantom:F520012P16 Fantom:G930025M02 Fantom:G930027B15 Fantom:I1C0015O22 Fantom:I1C0047B08 Fantom:I1C0048D10 Fantom:I420044B07 Fantom:I530019A02 Fantom:I730059D11 Fantom:I830030D09 Fantom:I830031A16 Fantom:I830031O11 Fantom:I830032A04 Fantom:I830032B17 Fantom:I830081O10 Fantom:I830119I22 Fantom:I920026I06 Fantom:I920059N07 Fantom:I920080B16 Fantom:I920097N04 EMBL:AK145238 EMBL:AK145243 EMBL:AK145804 EMBL:AK146349 EMBL:AK146557 EMBL:AK151441 EMBL:AK151500 EMBL:AK151578 EMBL:AK151595 EMBL:AK151602 EMBL:AK152659 EMBL:AK153031 EMBL:AK160011 EMBL:AK165428 EMBL:AK166836 EMBL:AK167268 EMBL:AK167534 EMBL:AK168843 EMBL:AK169102 EMBL:AK169245 EMBL:AK169821 EMBL:BC092045 MGI_trans_name:Tpm3-003 Vega_translation:187786 Vega_translation:OTTMUSP00000038084 protein_id:AAH92045.1 protein_id:BAE26319.1 protein_id:BAE26321.1 protein_id:BAE26659.1 protein_id:BAE27101.1 protein_id:BAE27258.1 protein_id:BAE30403.1 protein_id:BAE30451.1 protein_id:BAE30518.1 protein_id:BAE30535.1 protein_id:BAE30542.1 protein_id:BAE31395.1 protein_id:BAE31663.1 protein_id:BAE35558.1 protein_id:BAE38183.1 protein_id:BAE39058.1 protein_id:BAE39381.1 protein_id:BAE39603.1 protein_id:BAE40666.1 protein_id:BAE40884.1 protein_id:BAE41009.1 protein_id:BAE41391.1 OTTP:OTTMUSP00000038084 OTTT:OTTMUST00000073540 UniParc:UPI0000004196
definition	note : transcript_id=ENSMUST00000029549 protein_id : ENSMUSP00000029549 translation : MAGTTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_001240669.1 RefSeq_mRNA:NM_001253740.1 RefSeq_peptide_predicted:XP_006501898.1 RefSeq_peptide_predicted:XP_006501899.1 RefSeq_peptide_predicted:XP_006501901.1 RefSeq_peptide_predicted:XP_011238485.1 Vega_transcript:OTTMUST00000073541 Vega_transcript:Tpm3-004 Uniprot/SPTREMBL:E9Q7Q3 UCSC:uc029ung.1 EMBL:AC163616 GO:GO:0001725 GO:GO:0002102 GO:GO:0005515 GO:GO:0005737 GO:GO:0030426 GO:GO:0030863 GO:GO:0031941 GO:GO:0032154 GO:GO:0043005 GO:GO:0070062 MGI_trans_name:Tpm3-004 Vega_translation:187787 Vega_translation:OTTMUSP00000038085 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000038085 OTTT:OTTMUST00000073541 UniParc:UPI00016116E9
definition	note : transcript_id=ENSMUST00000118566 protein_id : ENSMUSP00000113056 translation : MAGTTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISDELDHALNDMTSI

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_001280678 RefSeq_mRNA:NM_001293749.1 RefSeq_peptide_predicted:XP_006501902.1 Vega_transcript:OTTMUST00000073606 Vega_transcript:Tpm3-005 Uniprot/SPTREMBL:D3Z6I8 UCSC:uc056ztn.1 EMBL:AC163616 GO:GO:0001725 GO:GO:0002102 GO:GO:0005515 GO:GO:0005737 GO:GO:0030426 GO:GO:0030863 GO:GO:0031941 GO:GO:0032154 GO:GO:0043005 GO:GO:0070062 MGI_trans_name:Tpm3-005 Vega_translation:187788 Vega_translation:OTTMUSP00000038133 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000038133 OTTT:OTTMUST00000073606 UniParc:UPI0000196051
definition	note : transcript_id=ENSMUST00000119158 protein_id : ENSMUSP00000113219 translation : MAGTTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKLTLHGLCD

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073608 Vega_transcript:Tpm3-007 Uniprot/SPTREMBL:D3YVR0 EMBL:AC163616 GO:GO:0001725 GO:GO:0002102 GO:GO:0005515 GO:GO:0005737 GO:GO:0030426 GO:GO:0030863 GO:GO:0031941 GO:GO:0032154 GO:GO:0043005 GO:GO:0070062 MGI_trans_name:Tpm3-007 Vega_translation:187789 Vega_translation:OTTMUSP00000038134 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000038134 OTTT:OTTMUST00000073608 UniParc:UPI00016116DB
definition	note : transcript_id=ENSMUST00000149432 protein_id : ENSMUSP00000114229 translation : MKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEEL

name	Tpm3 (ENSMUSG00000027940) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073609 Vega_transcript:Tpm3-008 MGI_trans_name:Tpm3-008 Vega_translation:187790 Vega_translation:OTTMUSP00000038135 OTTP:OTTMUSP00000038135 OTTT:OTTMUST00000073609 UniParc:UPI00016116DA
definition	note : transcript_id=ENSMUST00000127955 protein_id : ENSMUSP00000115565 translation : MKVIENRAL

name
type	STS
link
xref	UniSTS_NUM:273261 UniSTS:PMC355842P1
definition	note : map_weight=1 standard_name : PMC355842P1

name
type	STS
link
xref	UniSTS_NUM:162866 UniSTS:RH126154 UniSTS:C77371 MGI:D3Ertd34e
definition	note : map_weight=1 standard_name : RH126154

name
type	STS
link
xref	UniSTS_NUM:125645 UniSTS:U04541
definition	note : map_weight=1 standard_name : U04541

name
type	misc_feature
link
xref
definition	note : contig AC163616.3 32900..212857(1)

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073612 Vega_transcript:OTTMUST00000073612 MGI_trans_name:Tpm3-011 OTTT:OTTMUST00000073612
definition	note : retained_intron note : transcript_id=ENSMUST00000147430

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073607 Vega_transcript:OTTMUST00000073607 MGI_trans_name:Tpm3-006 OTTT:OTTMUST00000073607
definition	note : retained_intron note : transcript_id=ENSMUST00000131354

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073610 Vega_transcript:OTTMUST00000073610 MGI_trans_name:Tpm3-009 OTTT:OTTMUST00000073610
definition	note : retained_intron note : transcript_id=ENSMUST00000149115

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073611 Vega_transcript:OTTMUST00000073611 MGI_trans_name:Tpm3-010 OTTT:OTTMUST00000073611
definition	note : retained_intron note : transcript_id=ENSMUST00000133281

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073613 Vega_transcript:OTTMUST00000073613 MGI_trans_name:Tpm3-012 OTTT:OTTMUST00000073613
definition	note : retained_intron note : transcript_id=ENSMUST00000151798

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073614 Vega_transcript:OTTMUST00000073614 MGI_trans_name:Tpm3-013 OTTT:OTTMUST00000073614
definition	note : retained_intron note : transcript_id=ENSMUST00000133361

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073615 Vega_transcript:OTTMUST00000073615 MGI_trans_name:Tpm3-014 OTTT:OTTMUST00000073615
definition	note : retained_intron note : transcript_id=ENSMUST00000149734

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073616 Vega_transcript:OTTMUST00000073616 MGI_trans_name:Tpm3-015 OTTT:OTTMUST00000073616
definition	note : retained_intron note : transcript_id=ENSMUST00000143281

name	Tpm3 (ENSMUSG00000027940)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000073617 Vega_transcript:OTTMUST00000073617 MGI_trans_name:Tpm3-016 OTTT:OTTMUST00000073617
definition	note : processed_transcript note : transcript_id=ENSMUST00000136125

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Tpm3 (ENSMUSG00000027940)
Transcript ID	ENSMUST00000121503

Reports
substitution
cSNPs	0
Insertion	15
Deletion	11
SNPs	-1kb 90067977(c.-4760C>T), 90067978(c.-4759T>A), 90069533(c.-3204A>G), 90069555(c.-3182G>C), 90069959(c.-2778G>C), 90070126(c.-2611C>T), 90070159(c.-2578C>T), 90070234(c.-2503A>G), 90070388(c.-2349T>C), 90070484(c.-2253T>G), 90071198(c.-1539G>A), 90071854(c.-883A>T), 5'UTR CDS 3'UTR INTRON 90073317(c.115-403C>G), 90073374(c.115-346A>T), 90073381(c.115-339A>G), 90073446(c.115-274A>T), 90073514(c.115-206T>G), 90073527(c.115-193C>T), 90073561(c.115-159C>T), 90073858(c.240+13G>A), 90073955(c.240+110G>A), 90074050(c.240+205G>A), 90074249(c.240+404C>T), 90074551(c.240+706A>G), 90074660(c.240+815C>T), 90074742(c.240+897T>C), 90075657(c.240+1812C>T), 90075866(c.240+2021C>A), 90076048(c.240+2203A>G), 90076143(c.240+2298C>T), 90076310(c.240+2465T>A), 90076448(c.240+2603A>G), 90076465(c.240+2620C>T), 90076691(c.240+2846T>C), 90076761(c.240+2916T>C), 90076848(c.240+3003T>C), 90076893(c.240+3048C>T), 90076987(c.240+3142A>C), 90077022(c.240+3177T>C), 90077222(c.240+3377C>A), 90077240(c.240+3395T>C), 90077307(c.240+3462A>G), 90077405(c.240+3560T>C), 90077420(c.240+3575C>A), 90077441(c.240+3596C>T), 90077591(c.240+3746G>A), 90077632(c.240+3787T>C), 90077650(c.240+3805G>A), 90077856(c.240+4011T>A), 90077999(c.240+4154C>A), 90078203(c.240+4358A>G), 90078207(c.240+4362C>A), 90078267(c.240+4422C>T), 90078392(c.240+4547T>C), 90078518(c.240+4673G>A), 90078785(c.240+4940G>C), 90079005(c.240+5160G>A), 90079009(c.240+5164C>T), 90079202(c.240+5357G>A), 90079420(c.240+5575G>T), 90079487(c.240+5642G>C), 90079540(c.240+5695G>C), 90079542(c.240+5697G>A), 90079548(c.240+5703C>G), 90080028(c.240+6183A>G), 90081728(c.241-4718G>A), 90082107(c.241-4339T>C), 90082194(c.241-4252A>T), 90082242(c.241-4204T>G), 90082266(c.241-4180G>C), 90082942(c.241-3504G>A), 90083604(c.241-2842A>G), 90083715(c.241-2731T>C), 90083925(c.241-2521T>G), 90084001(c.241-2445A>G), 90084081(c.241-2365G>T), 90084579(c.241-1867C>A), 90085366(c.241-1080A>C), 90085574(c.241-872C>A), 90085585(c.241-861A>G), 90085794(c.241-652A>G), 90085863(c.241-583G>A), 90085888(c.241-558C>T), 90085944(c.241-502T>C), 90085956(c.241-490C>T), 90086049(c.241-397C>T), 90086059(c.241-387C>T), 90086093(c.241-353G>T), 90086223(c.241-223G>A), 90086270(c.241-176C>A), 90086417(c.241-29A>G), 90086944(c.374+365T>A), 90087211(c.375-244G>A), 90087375(c.375-80G>A), 90087587(c.492+15C>T), 90087822(c.563+78T>C), 90087987(c.563+243T>C), 90088058(c.563+314G>A), 90088202(c.563+458T>G), 90088223(c.563+479A>G), 90088300(c.563+556C>T), 90089362(c.639+239G>A), 90089895(c.702+36G>A), 90089897(c.702+38C>A), 90090122(c.772+43C>T), 90090158(c.772+79A>T), 90090313(c.772+234G>A), 90090350(c.772+271T>C), 90090416(c.772+337C>T), 90090554(c.773-459T>A), 90090579(c.773-434A>G), 90090621(c.773-392G>C), 90090680(c.773-333C>T), 90090733(c.773-280T>C), 90090841(c.773-172T>C), 90090864(c.773-149T>G), 90091186(c.851+95T>C), 90091281(c.851+190G>A), 90091334(c.851+243C>T), 90091345(c.851+254G>A), 90091470(c.851+379G>A), 90091488(c.851+397T>C), 90091494(c.851+403T>C), 90091601(c.852-330A>C), 90091887(c.852-44A>G), +1kb 90092173(c.239G>C), 90092203(c.269A>T), 90092312(c.378C>G), 90092355(c.421A>T), 90092451(c.517T>A), 90092487(c.553C>T), 90092798(c.864T>C), 90093012(c.1078G>A), 90093277(c.1343C>T), 90093308(c.1374C>T), 90093371(c.1437G>A), 90093826(c.1892T>G), 90093905(c.1971C>T), 90094489(c.2555C>T), 90094499(c.2565C>T), 90094745(c.2811A>G), 90094793(c.2859G>A), 90094985(c.3051A>G), 90094986(c.3052G>C), 90095337(c.3403C>T), 90095408(c.3474G>T), 90095450(c.3516G>A), 90096436(c.4502C>T), 90096533(c.4599A>G), 90096590(c.4656A>T), 90096807(c.4873G>A), 90096872(c.4938A>G), 90097067(c.5133C>G), 90097094(c.*5160C>T),
Insertions	-1kb 90068344 (c.-4393dupA), 90068386 (c.-4351_-4350insAGGAG), 90069964 (c.-2773_-2772insT), 90070327 (c.-2410_-2409insTT), 90071375 (c.-1362_-1361insTCT), 5'UTR CDS 3'UTR 90092060 (c.135dupG), INTRON 90075000 (c.240+1155_240+1156insCTC), 90075769 (c.240+1931dupA), 90076153 (c.240+2319_240+2321dupTTT), 90077816 (c.240+3971_240+3972insGT), 90082277 (c.241-4167dupT), 90084062 (c.241-2383_241-2382insTTT), 90089016 (c.564-32_564-31insCCCCCT), +1kb 90094303 (c.2365_2369dupCAAAA), 90094434 (c.2500_*2501insGTC),
Deletions	-1kb 5'UTR CDS 3'UTR INTRON 90077271 (c.240+3428delG), 90081404 (c.241-5039_241-5037delCCT), 90081550 (c.241-4879_241-4872delTGTCTGTC), 90082589 (c.241-3841delA), 90085814 (c.241-629_241-627delGAG), 90088067 (c.563+343_563+350delTTTTTTTT), 90089320 (c.639+210delC), 90090436 (c.772+358_772+363delAACAAC), +1kb 90095212 (c.3279delT), 90096820 (c.4887delA), 90096949 (c.*5016delT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000121503)	MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE FAERSVAKLEKTIDDLEDELYAQKLKYKAISDELDHALNDMTSI*
MSMv4 transcript	MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE FAERSVAKLEKTIDDLEDELYAQKLKYKAISDELDHALNDMTSI*
homology	100.00 (285 / 285)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Tpm3 (ENSMUSG00000027940)
Transcript ID	ENSMUST00000121503


..........AGCCTCAACACTAACTATCCTTGACATTATGAATTAATTAGAACCACTTC
TACTTGCTCTGCTAGCTCCAGTCCGGTCACCTTGAACAGTGTCCACTCCTCTGGCATAGA
TGGGTATATGGCAACTGTGTATGGGATCAATTGCCACCTGTCAATAGCAAGATTCCAAGT
GGAATTATGAGCATAGCTGGCACTACACTGGGGGATGTAGAGCTGGTGGACACTATAATG
GCATGGTGGACAGCGGGCTGGGGAGGGGGCCACAGAGGGAGCAGTTGAAGAGGAGTAGAG
GAAAGCGACAGTCTTCAGTATGTCAGACCTTCTATTTTAAGGTCGCTATGAGAAAACGTG
ATCCTGTTCTGTGACCTCCTTGTTTCTCATCCCACTTGACACCCTGAGATACCCTTTCAG
ATCCCAGGCCTTCAACTTTATCCTATGGCCTTTACAGACTAATGTCTCCTTGCCTATTAG
AGAATCCCAAAATAGCCCAGCAATCCCAACTGTCAATCTGGGGGAATTGTCAACGATCAT
GAGTGACCTCCCATCGTCACTGTTGACCACGCTCCTTAGATACCAGGAATCCAAAGACCA
AACCAGTAGAGTTTGGTCCATATCCAATATAGTCCAAGGGGAGAATGAGAGATCTGAAGG
CTACTAGGACCCCTCTGGTGGCGAGAACTGCTAAAGTACCCTTCTGTGCTTCAGTGTTCC
CCCCTCTTCTGTTCCTCTACTTTTGAGGGACCCACAGAGCTGCCAAGAACGAGTGGAAAG
TTTCAAGGTCAGGGAGAACCTCCCCCACCCCCACTTTCCATTGTCTAAAATCAGCCTCAG
CTGTTCCTCAATTTTTTTTTTCTTGCTGGTGATGTCAGTCTATCAATGTGTCTGACCCTG
TGTTCCCCCAGGGGAACAGTGAAGGGATGGGAGGGAGCTAGAAAGACCATGTTAGGAAGA
AGAGGTGGAGCCGCAAGCACAGATAAAGGTTCAAACCTGGGGAACTTTGA
GTGACCCGGGTGGCAGCCCTTCCTCTCTGGCCCCAGCCTCCAGTTCTCCAGTGTTCACAGGTGAGCCCACCAACGGTCACAGCTCATGATGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGTTAGACAAAGAGAATGTTCTGGACCGAGCTGAGCAAGCTGAAGCTGAGCAGAAACAGGCAGAAGAAAGAAGCAAGCAG
GTAGGTGCTGGTATGGACCTTTCCC..........GTTACTCTCTGGGCTCTGGCTCCAG
CTAGAGGATGAACTAGCAACCATGCAGAAGAAGCTGAAAGGGACAGAGGATGAGCTGGACAAGTATTCGGAAGCTTTAAAGGATGCTCAGGAGAAGCTGGAGCTAGCAGAGAAGAAGGCAGCCGAC
GTGAGTATTGGGAGATGGCTTATTT..........GTTTTCCATTTCCCATTGATTGAAG
GCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGTGCGCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGCAGAGAAGGCTGCTGATGAGAGTGAGAG
GTGTGTGAATCCCAAAAGAATAGGC..........CATTCTTTCATTCTGTTTCCGGCAG
AGGTATGAAGGTGATTGAAAATCGGGCTCTAAAAGATGAAGAAAAGATGGAACTCCAGGAAATCCAGCTAAAGGAAGCAAAGCACATTGCAGAAGAGGCCGATAGGAAGTATGAAGAG
GTGAGTTGCCTCTGTAGTGCGTGCG..........GCCGTACTGGGGTCTTTTCTTCTAG
GTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGTGCTGAGCTGGCAGAGTC
GTGAGTATTTTGTCTCCAGATCTTG..........TCCTTTGGTATTAAAATGTTCACAG
TAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGAGGCTCAGGCGGAGAAG
GTAGGGCTGGTTTGTGAAGATGCAC..........ATTTGTATTCTACTTTTCTTTACAG
TACTCTCAAAAAGAAGACAAGTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGGAG
GTGAGCTGAGGGGCTGAGCCGCATG..........TCTGTTTGTTGTTGTGCTTCCTCAG
GCAGAGACCCGTGCTGAGTTTGCTGAAAGATCGGTAGCCAAGCTGGAGAAGACCATTGATGACCTGGAAG
GTATGGAGCACATGAGGGCGTGTGA..........CCCTGTGGTTCCTGTGCCTGTCCAG
ACGAGCTCTATGCCCAGAAACTGAAGTACAAGGCCATTAGCGACGAGCTGGACCACGCCCTCAATGACATGACCTCTAT
GTAACTATCAGGCAGCAGCGTGGGG..........ACCTGGAGTGTCCTTTTTCATACAG
ATAAACTGTCACCGTTTCTGCCCTGTTCTGGATCTGCCCCCTTTCCTTGGGGAACCCAACACCCCACTCGCTCTGGATTCCATTTGGGTCAGCCTGGCTGGTTCCTACAGCCTTAGGGCTGGAGGGCCTTGGGGGGGGGCACACAAAGCAATTTACATATTTGCTTTCCAACCCCATATTAAAATGTTAAGCTGCCAGAA
GCCTCACGGCCTCTTGCATTTGTGTTATTGACAAAGTTGTTGCTGTACATAAGAAGGAGT
CCTGCCAGTGTGTTGTGGGGACAGCTGTATTAGGCTTCCCCTCTTCCAACTTCTGTATGA
TCAAAGCTACTTTGTGTGTGTGTTTTTCTTGACACTTAAACTTGCTGATTGGAGTCTTGT
CGGAGTGACCAGTAAAGGCTTCTCATGGTGGGAAGTCTGGTGCTTTTCCTCAAACCTTAC
TGAGGAGTTCTTACATAGCCCACCTGGACATTTTCATTCTTTTAGCCCCTCTCCCGTACA
GTAAGGTCAGTGACCATTGAATTAGCTCCTATCACTCTGCCCTTTTGCCCAAGACTTAGA
AACTACATCCTCGGACCCATCCTTACAGTTAAGTGATCATCCCAACTCACAGAGGAAGGT
GTAACATGGCGGGTTGGATTCTTGATAGATAGGTGTTTCATCTTTAAGCCTTTCTCATTT
CTCGCTCACTCGAGGCTGCTGCCATTGTCCTCTATAGGACGCACACGGCAAATGATGGGC
AAAGGGAAAACAGCTAGTCATGCATATTTCAAACAACATACACGTGAGGGTAATGACTTA
CTACTAAACTTCATAGTCAAGTTCTTCTTGGTACACATTGTAGAATTGAATATCAACACT
TCACAGCCGTTCCAGTTTATACAGCAGATACATTTGGTATCACAGCTAAATGCTGCATAG
TATTTCAGTTTCTTAGCAGAGTACATATTTGAAACTTGCCTTTTCAGTATCCAGGGCTAT
GAATGTGGCACAGGGAGAGTGTCACCCAATGTACACAAGGCTCTTGAGTTTGAACCCCAG
TACTACAAAGAGAGAAAGGGAAGCTATAGCTAGGTAGAGAAACTCTCTCCCAAGCCAGGT
TCCTTTGCCTACACTATCCCTGCCACGTAGCCTTTGAGATGAAGTCGAGGTTGATTTGTG
TGGCAGGCAGGGCCTGGTGTTTTCTTTTTGTGTTTTTTTT..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AGCCTCAACACTAACTATCCTTGACATTATGAATTAATTAGAACCACTTC TACTTGCTCTGCTAGCTCCAGTCCGGTCACCTTGAACAGTGTCCACTCCTCTGGCATAGA TGGGTATATGGCAACTGTGTATGGGATCAATTGCCACCTGTCAATAGCAAGATTCCAAGT GGAATTATGAGCATAGCTGGCACTACACTGGGGGATGTAGAGCTGGTGGACACTATAATG GCATGGTGGACAGCGGGCTGGGGAGGGGGCCACAGAGGGAGCAGTTGAAGAGGAGTAGAG GAAAGCGACAGTCTTCAGTATGTCAGACCTTCTATTTTAAGGTCGCTATGAGAAAACGTG ATCCTGTTCTGTGACCTCCTTGTTTCTCATCCCACTTGACACCCTGAGATACCCTTTCAG ATCCCAGGCCTTCAACTTTATCCTATGGCCTTTACAGACTAATGTCTCCTTGCCTATTAG AGAATCCCAAAATAGCCCAGCAATCCCAACTGTCAATCTGGGGGAATTGTCAACGATCAT GAGTGACCTCCCATCGTCACTGTTGACCACGCTCCTTAGATACCAGGAATCCAAAGACCA AACCAGTAGAGTTTGGTCCATATCCAATATAGTCCAAGGGGAGAATGAGAGATCTGAAGG CTACTAGGACCCCTCTGGTGGCGAGAACTGCTAAAGTACCCTTCTGTGCTTCAGTGTTCC CCCCTCTTCTGTTCCTCTACTTTTGAGGGACCCACAGAGCTGCCAAGAACGAGTGGAAAG TTTCAAGGTCAGGGAGAACCTCCCCCACCCCCACTTTCCATTGTCTAAAATCAGCCTCAG CTGTTCCTCAATTTTTTTTTTCTTGCTGGTGATGTCAGTCTATCAATGTGTCTGACCCTG TGTTCCCCCAGGGGAACAGTGAAGGGATGGGAGGGAGCTAGAAAGACCATGTTAGGAAGA AGAGGTGGAGCCGCAAGCACAGATAAAGGTTCAAACCTGGGGAACTTTGA
1	EXON 1	90,072,649	90,072,850	-	0	202	GTGACCCGGGTGGCAGCCCTTCCTCTCTGGCCCCAGCCTCCAGTTCTCCAGTGTTCACAG GTGAGCCCACCAACGGTCACAGCTCATGATGGAGGCCATCAAGAAAAAGATGCAGATGCT GAAGTTAGACAAAGAGAATGTTCTGGACCGAGCTGAGCAAGCTGAAGCTGAGCAGAAACA GGCAGAAGAAAGAAGCAAGCAG
	INTRON 1 - 2	90,072,851	90,073,719			869	GTAGGTGCTGGTATGGACCTTTCCC..........GTTACTCTCTGGGCTCTGGCTCCAG
2	EXON 2	90,073,720	90,073,845	0	0	126	CTAGAGGATGAACTAGCAACCATGCAGAAGAAGCTGAAAGGGACAGAGGATGAGCTGGAC AAGTATTCGGAAGCTTTAAAGGATGCTCAGGAGAAGCTGGAGCTAGCAGAGAAGAAGGCA GCCGAC
	INTRON 2 - 3	90,073,846	90,086,445			12,600	GTGAGTATTGGGAGATGGCTTATTT..........GTTTTCCATTTCCCATTGATTGAAG
3	EXON 3	90,086,446	90,086,579	0	2	134	GCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGAC CGTGCGCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGCAGAGAAGGCTGCT GATGAGAGTGAGAG
	INTRON 3 - 4	90,086,580	90,087,454			875	GTGTGTGAATCCCAAAAGAATAGGC..........CATTCTTTCATTCTGTTTCCGGCAG
4	EXON 4	90,087,455	90,087,572	2	0	118	AGGTATGAAGGTGATTGAAAATCGGGCTCTAAAAGATGAAGAAAAGATGGAACTCCAGGA AATCCAGCTAAAGGAAGCAAAGCACATTGCAGAAGAGGCCGATAGGAAGTATGAAGAG
	INTRON 4 - 5	90,087,573	90,087,673			101	GTGAGTTGCCTCTGTAGTGCGTGCG..........GCCGTACTGGGGTCTTTTCTTCTAG
5	EXON 5	90,087,674	90,087,744	0	2	71	GTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGTGCTGAG CTGGCAGAGTC
	INTRON 5 - 6	90,087,745	90,089,047			1,303	GTGAGTATTTTGTCTCCAGATCTTG..........TCCTTTGGTATTAAAATGTTCACAG
6	EXON 6	90,089,048	90,089,123	2	0	76	TAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGA GGCTCAGGCGGAGAAG
	INTRON 6 - 7	90,089,124	90,089,796			673	GTAGGGCTGGTTTGTGAAGATGCAC..........ATTTGTATTCTACTTTTCTTTACAG
7	EXON 7	90,089,797	90,089,859	0	0	63	TACTCTCAAAAAGAAGACAAGTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAG GAG
	INTRON 7 - 8	90,089,860	90,090,009			150	GTGAGCTGAGGGGCTGAGCCGCATG..........TCTGTTTGTTGTTGTGCTTCCTCAG
8	EXON 8	90,090,010	90,090,079	0	1	70	GCAGAGACCCGTGCTGAGTTTGCTGAAAGATCGGTAGCCAAGCTGGAGAAGACCATTGAT GACCTGGAAG
	INTRON 8 - 9	90,090,080	90,091,012			933	GTATGGAGCACATGAGGGCGTGTGA..........CCCTGTGGTTCCTGTGCCTGTCCAG
9	EXON 9	90,091,013	90,091,091	1	2	79	ACGAGCTCTATGCCCAGAAACTGAAGTACAAGGCCATTAGCGACGAGCTGGACCACGCCC TCAATGACATGACCTCTAT
	INTRON 9 - 10	90,091,092	90,091,930			839	GTAACTATCAGGCAGCAGCGTGGGG..........ACCTGGAGTGTCCTTTTTCATACAG
10	EXON 10	90,091,931	90,092,130	2	-	200	ATAAACTGTCACCGTTTCTGCCCTGTTCTGGATCTGCCCCCTTTCCTTGGGGAACCCAAC ACCCCACTCGCTCTGGATTCCATTTGGGTCAGCCTGGCTGGTTCCTACAGCCTTAGGGCT GGAGGGCCTTGGGGGGGGGCACACAAAGCAATTTACATATTTGCTTTCCAACCCCATATT AAAATGTTAAGCTGCCAGAA
	3' upstream sequence						GCCTCACGGCCTCTTGCATTTGTGTTATTGACAAAGTTGTTGCTGTACATAAGAAGGAGT CCTGCCAGTGTGTTGTGGGGACAGCTGTATTAGGCTTCCCCTCTTCCAACTTCTGTATGA TCAAAGCTACTTTGTGTGTGTGTTTTTCTTGACACTTAAACTTGCTGATTGGAGTCTTGT CGGAGTGACCAGTAAAGGCTTCTCATGGTGGGAAGTCTGGTGCTTTTCCTCAAACCTTAC TGAGGAGTTCTTACATAGCCCACCTGGACATTTTCATTCTTTTAGCCCCTCTCCCGTACA GTAAGGTCAGTGACCATTGAATTAGCTCCTATCACTCTGCCCTTTTGCCCAAGACTTAGA AACTACATCCTCGGACCCATCCTTACAGTTAAGTGATCATCCCAACTCACAGAGGAAGGT GTAACATGGCGGGTTGGATTCTTGATAGATAGGTGTTTCATCTTTAAGCCTTTCTCATTT CTCGCTCACTCGAGGCTGCTGCCATTGTCCTCTATAGGACGCACACGGCAAATGATGGGC AAAGGGAAAACAGCTAGTCATGCATATTTCAAACAACATACACGTGAGGGTAATGACTTA CTACTAAACTTCATAGTCAAGTTCTTCTTGGTACACATTGTAGAATTGAATATCAACACT TCACAGCCGTTCCAGTTTATACAGCAGATACATTTGGTATCACAGCTAAATGCTGCATAG TATTTCAGTTTCTTAGCAGAGTACATATTTGAAACTTGCCTTTTCAGTATCCAGGGCTAT GAATGTGGCACAGGGAGAGTGTCACCCAATGTACACAAGGCTCTTGAGTTTGAACCCCAG TACTACAAAGAGAGAAAGGGAAGCTATAGCTAGGTAGAGAAACTCTCTCCCAAGCCAGGT TCCTTTGCCTACACTATCCCTGCCACGTAGCCTTTGAGATGAAGTCGAGGTTGATTTGTG TGGCAGGCAGGGCCTGGTGTTTTCTTTTTGTGTTTTTTTT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Tpm3 (ENSMUSG00000027940)
Transcript ID	ENSMUST00000121503

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 285 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information